3-156866090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866090
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866090
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1130G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4294G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+986G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1277G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3166G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3337G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1521G>A
  hgvsp: ENST00000295926.3:c.1521G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.849G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg507Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

3-156866093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866093
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866093
    reference: chr 3
allele count: 4
allele frequency: 3.295218637756615e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+983G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3163G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3334G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1274G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1518G>A
  hgvsp: ENST00000295926.3:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4291G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1127G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.846G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu506Glu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-156866102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866102
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866102
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.837C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1265C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4282C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1118C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3325C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+974C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1509C>T
  hgvsp: ENST00000295926.3:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3154C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg503Arg
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-156866103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866103
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866103
    reference: chr 3
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3324G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+973G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1264G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1508G>A
  hgvsp: ENSP00000295926.3:p.Arg503His
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4281G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.836G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3153G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1117G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg503His
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-156866108-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866108
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866108
    reference: chr 3
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+968A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*612A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4276A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1503A>T
  hgvsp: ENST00000295926.3:c.1503A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1112A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1259A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3319A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.831A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3148A>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6322
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg501Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

3-156866109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866109
    reference: chr 3
allele count: 4
allele frequency: 3.295110056675893e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1258G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+967G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1111G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.830G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*611G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3318G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3147G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4275G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1502G>A
  hgvsp: ENSP00000295926.3:p.Arg501Gln
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg501Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

3-156866115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866115
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866115
    reference: chr 3
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3141G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.824G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*605G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1105G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4269G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3312G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+961G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1252G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1496G>A
  hgvsp: ENSP00000295926.3:p.Arg499His
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg499His
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-156866117-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866117
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866117
    reference: chr 3
allele count: 38
allele frequency: 3.130354553842098e-4
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1250G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+959G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1103G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3310G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3139G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.822G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1494G>A
  hgvsp: ENST00000295926.3:c.1494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*603G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4267G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg498Arg
num of homozygotes: 1
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

3-156866121-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866121
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866121
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1099A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*599A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1246A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.818A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1490A>G
  hgvsp: ENSP00000295926.3:p.Asp497Gly
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+955A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4263A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3306A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3135A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp497Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-156866123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866123
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866123
    reference: chr 3
allele count: 6
allele frequency: 4.942583653228331e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4261G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3133G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1097G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3304G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+953G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*597G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1488G>A
  hgvsp: ENST00000295926.3:c.1488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.816G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1244G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg496Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

3-156866126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866126
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866126
    reference: chr 3
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1241T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1094T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.813T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4258T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*594T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+950T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3301T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1485T>C
  hgvsp: ENST00000295926.3:c.1485T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3130T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His495His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

3-156866132-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866132
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866132
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4252A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1235A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*588A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.807A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1088A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+944A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3295A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1479A>T
  hgvsp: ENST00000295926.3:c.1479A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3124A>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly493Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-156866133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866133
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866133
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3294G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1087G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1478G>A
  hgvsp: ENSP00000295926.3:p.Gly493Glu
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1234G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.806G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3123G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+943G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*587G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4251G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly493Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

3-156866169-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866169
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866169
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*551A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1442A>G
  hgvsp: ENSP00000295926.3:p.His481Arg
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+907A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3087A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1198A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1051A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4215A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.770A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3258A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His481Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

3-156866173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866173
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866173
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4211G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1438G>A
  hgvsp: ENSP00000295926.3:p.Asp480Asn
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*547G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.766G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1047G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+903G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1194G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3083G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3254G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp480Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-156866175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866175
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866175
    reference: chr 3
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3081G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+901G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1045G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1436G>A
  hgvsp: ENSP00000295926.3:p.Arg479Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.764G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3252G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1192G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*545G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4209G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg479Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-156866176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866176
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866176
    reference: chr 3
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1435C>T
  hgvsp: ENSP00000295926.3:p.Arg479Trp
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.763C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4208C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3251C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*544C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1191C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1044C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3080C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+900C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Arg479Trp
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

3-156866192-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866192
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866192
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3064A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4192A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*528A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+884A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1175A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1419A>C
  hgvsp: ENST00000295926.3:c.1419A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1028A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3235A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.747A>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg473Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-156866193-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866193
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866193
    reference: chr 3
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1027G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4191G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3234G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.746G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1418G>C
  hgvsp: ENSP00000295926.3:p.Arg473Pro
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3063G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1174G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*527G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+883G>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg473Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-156866199-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866199
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866199
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4185G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3057G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.740G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3228G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1168G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1412G>A
  hgvsp: ENSP00000295926.3:p.Arg471His
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1021G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*521G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+877G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg471His
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-156866201-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866201
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866201
    reference: chr 3
allele count: 8
allele frequency: 6.589134517181169e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*519T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1410T>C
  hgvsp: ENST00000295926.3:c.1410T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4183T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1166T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.738T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+875T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1019T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3055T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3226T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser470Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-156866218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866218
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866218
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1002C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.721C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3209C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1149C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*502C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3038C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1393C>T
  hgvsp: ENSP00000295926.3:p.His465Tyr
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+858C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4166C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His465Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-156866219-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866219
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866219
    reference: chr 3
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1392T>G
  hgvsp: ENST00000295926.3:c.1392T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.720T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*1001T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3208T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*501T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+857T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1148T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3037T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4165T>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly464Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-156866221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866221
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866221
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3035G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1390G>A
  hgvsp: ENSP00000295926.3:p.Gly464Ser
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*499G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.718G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1146G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4163G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+855G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3206G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*999G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly464Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

3-156866223-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866223
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866223
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1144A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1388A>G
  hgvsp: ENSP00000295926.3:p.His463Arg
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.716A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3033A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4161A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*497A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*997A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+853A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3204A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46269
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His463Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

3-156866227-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866227
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866227
    reference: chr 3
allele count: 12
allele frequency: 9.883864591055103e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*993A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1140A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*493A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+849A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3029A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.712A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4157A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1384A>C
  hgvsp: ENST00000295926.3:c.1384A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3200A>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg462Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-156866253-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866253
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866253
    reference: chr 3
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1358C>A
  hgvsp: ENSP00000295926.3:p.Thr453Asn
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.686C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3174C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*467C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*967C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+823C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1114C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.3003C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4131C>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr453Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-156866268-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866268
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2988T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4116T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1343T>C
  hgvsp: ENSP00000295926.3:p.Leu448Pro
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*452T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*952T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.671T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1099T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+808T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3159T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6322
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu448Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-156866269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866269
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866269
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*951C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2987C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.670C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*451C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3158C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1098C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+807C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1342C>T
  hgvsp: ENSP00000295926.3:p.Leu448Phe
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4115C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu448Phe
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-156866283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866283
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866283
    reference: chr 3
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+793A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4101A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*437A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1328A>G
  hgvsp: ENSP00000295926.3:p.His443Arg
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1084A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3144A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2973A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*937A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.656A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His443Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-156866284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866284
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866284
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4100C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3143C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*936C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2972C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1083C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1327C>T
  hgvsp: ENSP00000295926.3:p.His443Tyr
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.655C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*436C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+792C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His443Tyr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

3-156866292-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866292
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866292
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2964A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.647A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*928A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*428A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4092A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+784A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3135A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1319A>T
  hgvsp: ENSP00000295926.3:p.His440Leu
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1075A>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His440Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-156866298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866298
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866298
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+778G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*922G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3129G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2958G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4086G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1069G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1313G>A
  hgvsp: ENSP00000295926.3:p.Arg438Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.641G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*422G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg438Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-156866319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866319
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866319
    reference: chr 3
allele count: 4
allele frequency: 3.296087544085171e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*401G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2937G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+757G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1292G>A
  hgvsp: ENSP00000295926.3:p.Arg431His
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1048G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4065G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3108G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.620G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*901G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg431His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-156866320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866320
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1291C>T
  hgvsp: ENSP00000295926.3:p.Arg431Cys
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3107C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4064C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2936C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1047C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*900C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.619C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*400C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+756C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6304
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg431Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

3-156866339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866339
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866339
    reference: chr 3
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2917G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*381G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1272G>A
  hgvsp: ENST00000295926.3:c.1272G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*881G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1028G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4045G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+737G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.600G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3088G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6273
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser424Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/3-156866358-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866358
    reference: chr 3
allele count: 1
allele frequency: 8.345434212942099e-6
allele num: 119826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1009G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4026G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+718G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3069G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2898G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*362G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*862G>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1253G>T
  hgvsp: ENSP00000295926.3:p.Arg418Leu
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.581G>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg418Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

3-156866358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866358
    reference: chr 3
allele count: 2
allele frequency: 1.66908684258842e-5
allele num: 119826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*362G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1253G>A
  hgvsp: ENSP00000295926.3:p.Arg418Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+718G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*862G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4026G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2898G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.581G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3069G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1009G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg418Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-156866364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866364
    reference: chr 3
allele count: 2
allele frequency: 1.683473342199626e-5
allele num: 118802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3063G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1247G>A
  hgvsp: ENSP00000295926.3:p.Arg416Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4020G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*1003G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.575G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+712G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2892G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*856G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*356G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg416Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-156866370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866370
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866370
    reference: chr 3
allele count: 11
allele frequency: 9.414584046559397e-5
allele num: 116840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*997A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*850A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.569A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4014A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*350A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1241A>G
  hgvsp: ENSP00000295926.3:p.Asn414Ser
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2886A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3057A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+706A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn414Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

3-156866372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866372
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866372
    reference: chr 3
allele count: 1
allele frequency: 8.558566268978621e-6
allele num: 116842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4012T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1239T>C
  hgvsp: ENST00000295926.3:c.1239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*848T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*995T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*348T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2884T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.567T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3055T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+704T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn413Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

3-156866376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866376
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866376
    reference: chr 3
allele count: 2
allele frequency: 1.724524462379499e-5
allele num: 115974
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1235A>G
  hgvsp: ENSP00000295926.3:p.Tyr412Cys
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.563A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4008A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*844A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+700A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*991A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3051A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*344A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2880A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr412Cys
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-156866387-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866387
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866387
    reference: chr 3
allele count: 1
allele frequency: 8.778860503906592e-6
allele num: 113910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3049-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.561-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*989-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1233-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2878-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+689T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4006-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*842-9T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*342-9T>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-156866388-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866388
    reference: chr 3
allele count: 1
allele frequency: 8.800028160090112e-6
allele num: 113636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*989-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4006-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*842-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+688A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*342-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3049-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1233-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.561-10A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2878-10A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-156866397-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866397
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866397
    reference: chr 3
allele count: 12
allele frequency: 1.077276644642344e-4
allele num: 111392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*842-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.561-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4006-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+679C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*989-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3049-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1233-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2878-19C>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*342-19C>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17769
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19611
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-156866417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866417
    reference: chr 3
allele count: 1
allele frequency: 9.370666066944038e-6
allele num: 106716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*342-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3049-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*989-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*842-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2878-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.561-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+659T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4006-39T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1233-39T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-156866424-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866424
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866424
    reference: chr 3
allele count: 1
allele frequency: 9.492529379378429e-6
allele num: 105346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*842-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2878-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3049-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.561-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4006-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+652T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*989-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*342-46T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1233-46T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

3-156866427-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156866427
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156866427
    reference: chr 3
allele count: 2
allele frequency: 1.923853864060486e-5
allele num: 103958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*989-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*842-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4006-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2878-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3049-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.561-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+649C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1233-49C>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*342-49C>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5919
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-156867030-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867030
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867029
    reference: chr 3
allele count: 2
allele frequency: 1.663755095249979e-5
allele num: 120210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*841+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.293delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.560+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4005+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2877+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1366delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3048+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1232+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*988+45delT
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*341+45delT
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: TA
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-156867042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867042
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867042
    reference: chr 3
allele count: 2
allele frequency: 1.657742486282181e-5
allele num: 120646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.282T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4005+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*841+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1355T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*988+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3048+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1232+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.560+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2877+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+34T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*341+34T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9991
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-156867044-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867044
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867044
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*988+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*341+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.280T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1232+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1353T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4005+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.560+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*841+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2877+32T>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3048+32T>A
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-156867049-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867049
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867049
    reference: chr 3
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4005+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1348A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3048+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*841+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.275A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2877+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*988+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1232+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.560+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+27A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*341+27A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

3-156867050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867050
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867050
    reference: chr 3
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1232+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1347C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*841+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*341+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.560+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3048+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4005+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*988+26C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.274C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2877+26C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

3-156867055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867055
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867055
    reference: chr 3
allele count: 2
allele frequency: 1.651418568550385e-5
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4005+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3048+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1232+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*341+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.269G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.560+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1342G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2877+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*841+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*988+21G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1232+21G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

3-156867077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867077
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867077
    reference: chr 3
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.559C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1231C>T
  hgvsp: ENSP00000295926.3:p.His411Tyr
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*840C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2876C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1320C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.247C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.4004C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1231C>T
  hgvsp: ENSP00000420277.1:p.Gln411Ter
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*987C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*860C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3047C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln411Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum

3-156867083-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867083
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867083
    reference: chr 3
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.241A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*334A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3998A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.553A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*834A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3041A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*854A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1225A>T
  hgvsp: ENSP00000295926.3:p.Arg409Ter
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1314A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1225A>T
  hgvsp: ENSP00000420277.1:p.Arg409Ter
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*981A>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2870A>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17977
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg409Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-156867084-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867084
    reference: chr 3
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1224A>G
  hgvsp: ENST00000295926.3:c.1224A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*853A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1313A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*833A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3040A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*333A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*980A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2869A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3997A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.552A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.240A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1224A>G
  hgvsp: ENST00000461804.1:c.1224A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro408Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-156867087-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867087
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867087
    reference: chr 3
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3037T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.549T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1221T>G
  hgvsp: ENST00000461804.1:c.1221T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1221T>G
  hgvsp: ENST00000295926.3:c.1221T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.237T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*977T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1310T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3994T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*330T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*830T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2866T>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*850T>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr407Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

3-156867091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867091
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867091
    reference: chr 3
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.233A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*326A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*826A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.545A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1217A>G
  hgvsp: ENSP00000420277.1:p.His406Arg
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1306A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3033A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*846A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*973A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2862A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1217A>G
  hgvsp: ENSP00000295926.3:p.His406Arg
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3990A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His406Arg
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

3-156867093-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867093
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867093
    reference: chr 3
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1215A>C
  hgvsp: ENST00000461804.1:c.1215A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*971A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.231A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*824A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*324A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3988A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*844A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2860A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1215A>C
  hgvsp: ENST00000295926.3:c.1215A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.543A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3031A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1304A>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser405Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-156867104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867104
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867104
    reference: chr 3
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*960C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1293C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*813C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.532C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.220C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*833C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3020C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1204C>T
  hgvsp: ENSP00000420277.1:p.Arg402Cys
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1204C>T
  hgvsp: ENSP00000295926.3:p.Arg402Cys
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*313C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3977C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2849C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg402Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

3-156867109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867109
    reference: chr 3
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1199G>A
  hgvsp: ENSP00000295926.3:p.Arg400Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*828G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.527G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.215G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*808G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*955G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1199G>A
  hgvsp: ENSP00000420277.1:p.Arg400Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2844G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3015G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1288G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3972G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*308G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg400Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-156867123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867123
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867123
    reference: chr 3
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.513G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1185G>A
  hgvsp: ENST00000295926.3:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3958G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*294G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*941G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*794G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.201G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3001G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2830G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1185G>A
  hgvsp: ENST00000461804.1:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1274G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*814G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser395Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

3-156867124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867124
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867124
    reference: chr 3
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1184C>T
  hgvsp: ENSP00000420277.1:p.Ser395Leu
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3957C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*293C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*793C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.3000C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*940C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.512C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1184C>T
  hgvsp: ENSP00000295926.3:p.Ser395Leu
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.200C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*813C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2829C>T
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1273C>T
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser395Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

3-156867127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867127
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867127
    reference: chr 3
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1270G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1181G>A
  hgvsp: ENSP00000295926.3:p.Arg394Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3954G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*937G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*290G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*810G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.509G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1181G>A
  hgvsp: ENSP00000420277.1:p.Arg394Gln
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*790G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.2997G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2826G>A
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.197G>A
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg394Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

3-156867134-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867134
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867134
    reference: chr 3
allele count: 35
allele frequency: 2.883838966432115e-4
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2819G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*283G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.190G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1174G>C
  hgvsp: ENSP00000295926.3:p.Ala392Pro
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1174G>C
  hgvsp: ENSP00000420277.1:p.Ala392Pro
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*930G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3947G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.2990G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*783G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.502G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1263G>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*803G>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala392Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

3-156867144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867144
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867144
    reference: chr 3
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.180T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*773T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1253T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*273T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.492T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2809T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1164T>C
  hgvsp: ENST00000461804.1:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*793T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.2980T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*920T>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1164T>C
  hgvsp: ENST00000295926.3:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3937T>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn388Asn
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

3-156867145-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867145
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867145
    reference: chr 3
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*272A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.2979A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*792A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*919A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2808A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.491A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1163A>G
  hgvsp: ENSP00000420277.1:p.Asn388Ser
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1252A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*772A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3936A>G
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1163A>G
  hgvsp: ENSP00000295926.3:p.Asn388Ser
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.179A>G
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn388Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS

3-156867147-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156867147
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 156867147
    reference: chr 3
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000471247
  gene symbol: CCNL1
  hgvsc: ENST00000471247.1:n.2806A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000420277
  ensembl transcript: ENST00000461804
  gene symbol: CCNL1
  hgvsc: ENST00000461804.1:c.1161A>C
  hgvsp: ENSP00000420277.1:p.Arg387Ser
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476744
  gene symbol: CCNL1
  hgvsc: ENST00000476744.1:n.489A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000418449
  ensembl transcript: ENST00000477127
  gene symbol: CCNL1
  hgvsc: ENST00000477127.1:c.*790A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000476367
  gene symbol: CCNL1
  hgvsc: ENST00000476367.1:n.1250A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417237
  ensembl transcript: ENST00000470121
  gene symbol: CCNL1
  hgvsc: ENST00000470121.1:c.*770A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000467849
  gene symbol: CCNL1
  hgvsc: ENST00000467849.1:n.177A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000464316
  gene symbol: CCNL1
  hgvsc: ENST00000464316.1:n.2977A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417343
  ensembl transcript: ENST00000475298
  gene symbol: CCNL1
  hgvsc: ENST00000475298.1:c.*917A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000295926
  ensembl transcript: ENST00000295926
  gene symbol: CCNL1
  hgvsc: ENST00000295926.3:c.1161A>C
  hgvsp: ENSP00000295926.3:p.Arg387Ser
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163660
  ensembl transcript: ENST00000474539
  gene symbol: CCNL1
  hgvsc: ENST00000474539.1:n.3934A>C
  variant of: http://identifiers.org/hgnc/20569
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163660
  ensembl protein: ENSP00000417218
  ensembl transcript: ENST00000468977
  gene symbol: CCNL1
  hgvsc: ENST00000468977.1:c.*270A>C
  variant of: http://identifiers.org/hgnc/20569
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg387Ser
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 6315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.46e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.022e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.954e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.034e0

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 1.651065e6

GenotypeQuality
all individuals: 6318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994305409860632e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.599e0

FS
type: SiteQuality
SIO_000300: 1.886e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

DP
type: SiteQuality
SIO_000300: 1.651605e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

FS
type: SiteQuality
SIO_000300: 1.8196e1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: -1.704e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.104e0

DP
type: SiteQuality
SIO_000300: 1.65135e6

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.651523e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.285e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

QD
type: SiteQuality
SIO_000300: 2.076e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -1.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

DP
type: SiteQuality
SIO_000300: 1.651491e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

FS
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46221
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.073e0

DP
type: SiteQuality
SIO_000300: 1.651733e6

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 1.616e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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VQSLOD
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MQRankSum
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SIO_000300: -4.22e-1

FS
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
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SIO_000300: 4.81e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
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SIO_000300: -6.79e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele count: 9
allele frequency: 1.361161524500907e-3
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.993766482857828e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 25
allele frequency: 2.161881701833276e-3
allele num: 11564
num of homozygotes: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
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SIO_000300: 2.19e-2

ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 1.655218e6

QD
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BaseQRankSum
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SIO_000300: -5.016e0

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.651545e6

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.17e-2

ReadPosRankSum
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QD
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SIO_000300: 1.313e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.886e0

FS
type: SiteQuality
SIO_000300: 5.15e-1

MQRankSum
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SIO_000300: 9.389999999999999e-1

MQ
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SIO_000300: 6.0e1

QD
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SIO_000300: 1.304e1

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 6.66e-1

ClippingRankSum
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SIO_000300: 3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

DP
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SIO_000300: 1.651503e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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South Asian
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allele num: 16512
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VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
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SIO_000300: 3.83e0

MQ
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DP
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SIO_000300: 1.651736e6

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.25e-1

MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.392e1

ClippingRankSum
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SIO_000300: 7.75e-1

DP
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SIO_000300: 1.651847e6

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.097e0

ReadPosRankSum
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SIO_000300: 3.19e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.295e1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.109e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

DP
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SIO_000300: 1.651428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
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African
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allele num: 10406
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 7.52e-1

DP
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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Other
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East Asian
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South Asian
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MQRankSum
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 6.726888333653661e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
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DP
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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African
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Latino
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allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQRankSum
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FS
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MQ
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SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
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SIO_000300: 9.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

QD
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SIO_000300: 1.316e1

DP
type: SiteQuality
SIO_000300: 1.65176e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
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MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
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SIO_000300: 1.13e0

MQRankSum
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SIO_000300: -9.91e-1

VQSLOD
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BaseQRankSum
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SIO_000300: -7.362e0

ClippingRankSum
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SIO_000300: -8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 4.42e-1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele num: 8654
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 1.651394e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
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SIO_000300: -1.17e-1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 4.711e0

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.798022175606832e-4
allele num: 66740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
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SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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SIO_000300: 2.62e0

FS
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SIO_000300: 1.149e0

QD
type: SiteQuality
SIO_000300: 1.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.652649e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

FS
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.651579e6

BaseQRankSum
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SIO_000300: -5.012e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
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SIO_000300: 1.74e-1

ReadPosRankSum
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SIO_000300: 1.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66738
num of homozygotes: 0

Latino
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East Asian
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European (Finnish)
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Other
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
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Latino
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ClippingRankSum
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FS
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QD
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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Other
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East Asian
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 16502
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
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Other
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African
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allele frequency: 0.0e0
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66294
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Other
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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QD
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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East Asian
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Latino
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.543e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.582393e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

GenotypeQuality
all individuals: 5877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52522725886157e-5
allele num: 65564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.462e1

VQSLOD
type: SiteQuality
SIO_000300: -4.957e0

DP
type: SiteQuality
SIO_000300: 1.581449e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: -1.277e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 2.9155e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064570500444363e-5
allele num: 65262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.77e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 1.584e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.88e-1

DP
type: SiteQuality
SIO_000300: 1.56884e6

GenotypeQuality
all individuals: 903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551253412757508e-5
allele num: 64464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.139e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 9.414999999999999e0

DP
type: SiteQuality
SIO_000300: 1.535811e6

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.28e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6005
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554146462762651e-5
allele num: 64344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.531064e6

FS
type: SiteQuality
SIO_000300: 1.719e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.226e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

GenotypeQuality
all individuals: 1184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 9.75e1
variant carriers: 12

East Asian
type: Population
allele count: 11
allele frequency: 1.341790680653818e-3
allele num: 8198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041232819658476e-4
allele num: 9604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.47495e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

QD
type: SiteQuality
SIO_000300: 1.181e1

GenotypeQuality
all individuals: 5981
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7853
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629301355578728e-5
allele num: 61376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.816e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

DP
type: SiteQuality
SIO_000300: 1.263164e6

GenotypeQuality
all individuals: 2881
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.044059302568386e-4
allele num: 9578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.231924e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.63e-1

QD
type: SiteQuality
SIO_000300: 1.786e1

VQSLOD
type: SiteQuality
SIO_000300: -6.008e-1

GenotypeQuality
all individuals: 6409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4303
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6917
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.343587000133743e-5
allele num: 59816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.223515e6

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 8.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

GenotypeQuality
all individuals: 680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.032508491023775e-5
allele num: 65952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 6.058e1

ReadPosRankSum
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SIO_000300: 3.18e-1

InbreedingCoeff
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SIO_000300: 5.9e-3

MQRankSum
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SIO_000300: 2.4e-2

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.29e-1

VQSLOD
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SIO_000300: 5.02e0

QD
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SIO_000300: 9.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

DP
type: SiteQuality
SIO_000300: 2.065208e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509297271190534e-5
allele num: 66256
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
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SIO_000300: -2.596e-1

MQ
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SIO_000300: 6.0e1

QD
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ReadPosRankSum
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SIO_000300: 2.15e0

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.097861e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
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SIO_000300: 3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 4.05e-1

VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.52e-1

DP
type: SiteQuality
SIO_000300: 2.100516e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.92e-1

FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -9.389999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

QD
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SIO_000300: 1.087e1

BaseQRankSum
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SIO_000300: -2.024e0

MQRankSum
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SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 2.105474e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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FS
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SIO_000300: 3.641e0

VQSLOD
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ClippingRankSum
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SIO_000300: -1.99e-1

BaseQRankSum
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DP
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SIO_000300: 2.106231e6

MQRankSum
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SIO_000300: 1.69e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16496
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

African
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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allele num: 11536
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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DP
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.24e-1

VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
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European (Finnish)
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East Asian
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num of homozygotes: 0

Latino
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South Asian
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African
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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FS
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66710
num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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VQSLOD
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BaseQRankSum
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QD
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FS
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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Latino
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East Asian
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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FS
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MQRankSum
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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QD
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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FS
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VQSLOD
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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Latino
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East Asian
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South Asian
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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QD
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10404
num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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FS
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GenotypeQuality
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