4-41634873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41634873
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41634873
    reference: chr 4
allele count: 1
allele frequency: 6.949270326615705e-5
allele num: 14390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-6076G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-6076G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11644G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-6076G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-6076G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11644G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11644G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-6076G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11644G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1709G>A
  hgvsp: ENSP00000425631.1:p.Gly570Glu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-6076G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11644G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-6076G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly570Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

4-41634879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41634879
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41634879
    reference: chr 4
allele count: 1
allele frequency: 6.954102920723227e-5
allele num: 14380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1715A>G
  hgvsp: ENSP00000425631.1:p.Glu572Gly
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11638A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11638A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11638A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11638A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-6070A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11638A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu572Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

4-41634911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41634911
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41634911
    reference: chr 4
allele count: 3
allele frequency: 2.090883746863675e-4
allele num: 14348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11606C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11606C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1720+27C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11606C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11606C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-6038C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11606C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

4-41634912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41634912
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41634912
    reference: chr 4
allele count: 1
allele frequency: 6.969612489545581e-5
allele num: 14348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11605G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1720+28G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11605G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11605G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11605G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-6037G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11605G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

4-41634963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41634963
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41634963
    reference: chr 4
allele count: 2
allele frequency: 1.407855835562438e-4
allele num: 14206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11554C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11554C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11554C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5986C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11554C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5986C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5986C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1721-31C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5986C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5986C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5986C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11554C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5986C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

4-41634969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41634969
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41634969
    reference: chr 4
allele count: 1
allele frequency: 7.026419336706015e-5
allele num: 14232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11548G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5980G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5980G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11548G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11548G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5980G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5980G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11548G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11548G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1721-25G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5980G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5980G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5980G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-41635017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635017
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635017
    reference: chr 4
allele count: 1
allele frequency: 7.033338022225348e-5
allele num: 14218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11500G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1744G>A
  hgvsp: ENSP00000425631.1:p.Asp582Asn
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11500G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11500G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11500G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5932G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11500G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp582Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-41635034-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635034
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635034
    reference: chr 4
allele count: 1773
allele frequency: 1.246660104064126e-1
allele num: 14222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11483A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1761A>G
  hgvsp: ENST00000503057.1:c.1761A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11483A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11483A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11483A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5915A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11483A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.5e0
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
hgvs: p.Thr587Thr
num of homozygotes: 191
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-41635100-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635100
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635100
    reference: chr 4
allele count: 1
allele frequency: 7.155123068116771e-5
allele num: 13976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5849A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11417A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5849A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11417A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1827A>G
  hgvsp: ENST00000503057.1:c.1827A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5849A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5849A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11417A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11417A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11417A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5849A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5849A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5849A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1827A>G
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

4-41635107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635107
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635107
    reference: chr 4
allele count: 1
allele frequency: 7.198387561186294e-5
allele num: 13892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1829+5G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11410G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11410G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11410G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11410G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5842G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11410G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1829+5G>A
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-41635119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635119
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635119
    reference: chr 4
allele count: 1
allele frequency: 7.275902211874272e-5
allele num: 13744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11398C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1829+17C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11398C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11398C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5830C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11398C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11398C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

4-41635129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635129
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635129
    reference: chr 4
allele count: 2
allele frequency: 1.471670345842531e-4
allele num: 13590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5820C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1829+27C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5820C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5820C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-11388C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5820C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5820C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-11388C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5820C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-11388C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-11388C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-11388C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5820C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

4-41635548-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635548
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635548
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 13654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10969A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10969A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10969A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10969A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10969A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5401A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1830-17A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

4-41635660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635660
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635660
    reference: chr 4
allele count: 6
allele frequency: 4.218815918998734e-4
allele num: 14222
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5289G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5289G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1925G>A
  hgvsp: ENSP00000425631.1:p.Gly642Asp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10857G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10857G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10857G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10857G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10857G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5289G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5289G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5289G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5289G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5289G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly642Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

4-41635665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635665
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635665
    reference: chr 4
allele count: 1
allele frequency: 7.032348804500703e-5
allele num: 14220
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10852C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1930C>T
  hgvsp: ENSP00000425631.1:p.Arg644Ter
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10852C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10852C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5284C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10852C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10852C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg644Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

4-41635666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635666
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635666
    reference: chr 4
allele count: 1
allele frequency: 7.032348804500703e-5
allele num: 14220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10851G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5283G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10851G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.1931G>A
  hgvsp: ENSP00000425631.1:p.Arg644Gln
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5283G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10851G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10851G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5283G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5283G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10851G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5283G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5283G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5283G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg644Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

4-41635738-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635738
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635738
    reference: chr 4
allele count: 2
allele frequency: 1.406271972999578e-4
allele num: 14222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2003C>G
  hgvsp: ENSP00000425631.1:p.Ser668Cys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10779C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10779C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10779C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5211C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10779C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10779C>G
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser668Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-41635770-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635770
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635770
    reference: chr 4
allele count: 1
allele frequency: 7.034327518289252e-5
allele num: 14216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10747G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10747G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10747G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2035G>T
  hgvsp: ENSP00000425631.1:p.Ala679Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5179G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10747G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10747G>T
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala679Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/4-41635795-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635795
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635795
    reference: chr 4
allele count: 1
allele frequency: 7.056167090036692e-5
allele num: 14172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10722C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10722C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2060C>A
  hgvsp: ENSP00000425631.1:p.Ser687Tyr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10722C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10722C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5154C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10722C>A
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser687Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

4-41635814-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635814
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635813
    reference: chr 4
allele count: 6
allele frequency: 4.297994269340974e-4
allele num: 13960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10700delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2082delA
  hgvsp: ENSP00000425631.1:p.Asp695IlefsTer43
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10700delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10700delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10700delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5132delA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10700delA
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp695IlefsTer43
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

4-41635822-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635822
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635822
    reference: chr 4
allele count: 36
allele frequency: 2.617420386796568e-3
allele num: 13754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5127A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5127A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10695A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2087A>G
  hgvsp: ENSP00000425631.1:p.Gln696Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10695A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10695A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10695A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5127A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10695A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5127A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5127A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5127A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5127A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Gln696Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

4-41635833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635833
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635833
    reference: chr 4
allele count: 1703
allele frequency: 1.27508235998802e-1
allele num: 13356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10684A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2090+8A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10684A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5116A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5116A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5116A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10684A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5116A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5116A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5116A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10684A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10684A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5116A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.75e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
hgvs: c.2090+8A>G
num of homozygotes: 161
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

4-41635851-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635851
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635850
    reference: chr 4
allele count: 1
allele frequency: 7.903888713246918e-5
allele num: 12652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10665delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10665delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10665delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2090+27delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5097delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10665delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10665delG
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: TG
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

4-41635856-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41635856
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41635856
    reference: chr 4
allele count: 1627
allele frequency: 1.296414342629482e-1
allele num: 12550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10661T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-5093T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-5093T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10661T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-5093T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-5093T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10661T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10661T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-5093T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2090+31T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-5093T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10661T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-5093T>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 2.25e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 481
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.5e0
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 156
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

4-41640904-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640904
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640904
    reference: chr 4
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5613A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5613A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5613A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5613A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5613A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-45A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-45A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

4-41640920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640920
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640920
    reference: chr 4
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5597G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5597G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5597G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5597G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5597G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-29G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-29G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-41640925-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640925
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640925
    reference: chr 4
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5592C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5592C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5592C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-24C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5592C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5592C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091-24C>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

4-41640928-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640928
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640928
    reference: chr 4
allele count: 3
allele frequency: 2.476514388548598e-5
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5589A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5589A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5589A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5589A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5589A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-21A>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-21A>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

4-41640943-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640943
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640943
    reference: chr 4
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5574T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5574T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5574T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5574T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5574T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-6T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-6T>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.936-6T>A
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

4-41640945-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640945
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640945
    reference: chr 4
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5572A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5572A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440-4A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5572A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5572A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5572A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.936-4A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

4-41640949-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640949
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640949
    reference: chr 4
allele count: 4
allele frequency: 3.32723340542339e-5
allele num: 120220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5568A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.936A>G
  hgvsp: ENST00000508501.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.936A>G
  hgvsp: ENST00000313860.7:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5568A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.936A>G
  hgvsp: ENST00000512946.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.440A>G
  hgvsp: ENST00000508466.1:c.440A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5568A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.474A>G
  hgvsp: ENST00000396595.3:c.474A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2091A>G
  hgvsp: ENST00000503057.1:c.2091A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.459A>G
  hgvsp: ENST00000511496.1:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5568A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5568A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.936A>G
  hgvsp: ENST00000512632.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.936A>G
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

4-41640952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640952
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640952
    reference: chr 4
allele count: 211
allele frequency: 1.757835280003999e-3
allele num: 120034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2094C>T
  hgvsp: ENST00000503057.1:c.2094C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5565C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.939C>T
  hgvsp: ENST00000512632.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.443C>T
  hgvsp: ENST00000508466.1:c.443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.939C>T
  hgvsp: ENST00000512946.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.477C>T
  hgvsp: ENST00000396595.3:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.939C>T
  hgvsp: ENST00000508501.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.939C>T
  hgvsp: ENST00000313860.7:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5565C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5565C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5565C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5565C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.462C>T
  hgvsp: ENST00000511496.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr313Tyr
num of homozygotes: 1
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

4-41640953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640953
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640953
    reference: chr 4
allele count: 2
allele frequency: 1.666666666666667e-5
allele num: 120000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5564G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.940G>A
  hgvsp: ENSP00000427045.1:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.940G>A
  hgvsp: ENSP00000316891.7:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.478G>A
  hgvsp: ENSP00000379840.3:p.Gly160Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5564G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.940G>A
  hgvsp: ENSP00000424825.1:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.940G>A
  hgvsp: ENSP00000424645.1:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.444G>A
  hgvsp: ENSP00000421656.1:p.Gly149Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5564G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2095G>A
  hgvsp: ENSP00000425631.1:p.Gly699Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.463G>A
  hgvsp: ENSP00000421242.1:p.Gly155Ser
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5564G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5564G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly314Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

4-41640953-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640953
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640953
    reference: chr 4
allele count: 1
allele frequency: 8.333333333333334e-6
allele num: 120000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2095G>C
  hgvsp: ENSP00000425631.1:p.Gly699Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.940G>C
  hgvsp: ENSP00000427045.1:p.Gly314Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5564G>C
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.940G>C
  hgvsp: ENSP00000424645.1:p.Gly314Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.463G>C
  hgvsp: ENSP00000421242.1:p.Gly155Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.444G>C
  hgvsp: ENSP00000421656.1:p.Gly149Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5564G>C
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.940G>C
  hgvsp: ENSP00000424825.1:p.Gly314Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.478G>C
  hgvsp: ENSP00000379840.3:p.Gly160Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5564G>C
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.940G>C
  hgvsp: ENSP00000316891.7:p.Gly314Arg
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5564G>C
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5564G>C
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly314Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

4-41640957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640957
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640957
    reference: chr 4
allele count: 3
allele frequency: 2.506475060573147e-5
allele num: 119690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.482C>T
  hgvsp: ENSP00000379840.3:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.944C>T
  hgvsp: ENSP00000427045.1:p.Pro315Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5560C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.944C>T
  hgvsp: ENSP00000424645.1:p.Pro315Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5560C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.448C>T
  hgvsp: ENSP00000421656.1:p.Pro150Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.944C>T
  hgvsp: ENSP00000424825.1:p.Pro315Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.944C>T
  hgvsp: ENSP00000316891.7:p.Pro315Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5560C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.467C>T
  hgvsp: ENSP00000421242.1:p.Pro156Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2099C>T
  hgvsp: ENSP00000425631.1:p.Pro700Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5560C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5560C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro315Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-41640958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640958
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640958
    reference: chr 4
allele count: 6
allele frequency: 5.018148972115819e-5
allele num: 119566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2100G>A
  hgvsp: ENST00000503057.1:c.2100G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5559G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.945G>A
  hgvsp: ENST00000313860.7:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.449G>A
  hgvsp: ENST00000508466.1:c.449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5559G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5559G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.945G>A
  hgvsp: ENST00000508501.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.483G>A
  hgvsp: ENST00000396595.3:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5559G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.945G>A
  hgvsp: ENST00000512946.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.945G>A
  hgvsp: ENST00000512632.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5559G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.468G>A
  hgvsp: ENST00000511496.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro315Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

4-41640966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640966
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640966
    reference: chr 4
allele count: 1
allele frequency: 8.404491360182881e-6
allele num: 118984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.953C>T
  hgvsp: ENSP00000427045.1:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.491C>T
  hgvsp: ENSP00000379840.3:p.Pro164Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.953C>T
  hgvsp: ENSP00000316891.7:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.457C>T
  hgvsp: ENSP00000421656.1:p.Pro153Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.476C>T
  hgvsp: ENSP00000421242.1:p.Pro159Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5551C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2108C>T
  hgvsp: ENSP00000425631.1:p.Pro703Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.953C>T
  hgvsp: ENSP00000424825.1:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5551C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.953C>T
  hgvsp: ENSP00000424645.1:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5551C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5551C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5551C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro318Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-41640967-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640967
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640967
    reference: chr 4
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5550T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2109T>A
  hgvsp: ENST00000503057.1:c.2109T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.954T>A
  hgvsp: ENST00000313860.7:c.954T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.458T>A
  hgvsp: ENST00000508466.1:c.458T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.954T>A
  hgvsp: ENST00000508501.1:c.954T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.477T>A
  hgvsp: ENST00000511496.1:c.477T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5550T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.954T>A
  hgvsp: ENST00000512946.1:c.954T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5550T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.954T>A
  hgvsp: ENST00000512632.1:c.954T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.492T>A
  hgvsp: ENST00000396595.3:c.492T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5550T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5550T>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro318Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-41640968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640968
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640968
    reference: chr 4
allele count: 6
allele frequency: 5.050675106905957e-5
allele num: 118796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.459G>A
  hgvsp: ENSP00000421656.1:p.Val154Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.955G>A
  hgvsp: ENSP00000316891.7:p.Val319Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.955G>A
  hgvsp: ENSP00000427045.1:p.Val319Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.955G>A
  hgvsp: ENSP00000424645.1:p.Val319Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.493G>A
  hgvsp: ENSP00000379840.3:p.Val165Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5549G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2110G>A
  hgvsp: ENSP00000425631.1:p.Val704Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.955G>A
  hgvsp: ENSP00000424825.1:p.Val319Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5549G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.478G>A
  hgvsp: ENSP00000421242.1:p.Val160Met
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5549G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5549G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5549G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val319Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

4-41640979-C-CAAAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640979
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640983
    reference: chr 4
allele count: 1
allele frequency: 8.50210001870462e-6
allele num: 117618
alternate allele: CAAAT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2121_2122insAAAT
  hgvsp: ENSP00000425631.1:p.Ala708LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.966_967insAAAT
  hgvsp: ENSP00000427045.1:p.Ala323LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.470_471insAAAT
  hgvsp: ENSP00000421656.1:p.Ala158LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5538_474-5537insAAAT
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.489_490insAAAT
  hgvsp: ENSP00000421242.1:p.Ala164LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.966_967insAAAT
  hgvsp: ENSP00000424645.1:p.Ala323LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5538_474-5537insAAAT
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.966_967insAAAT
  hgvsp: ENSP00000424825.1:p.Ala323LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.504_505insAAAT
  hgvsp: ENSP00000379840.3:p.Ala169LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.966_967insAAAT
  hgvsp: ENSP00000316891.7:p.Ala323LysfsTer9
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5538_495-5537insAAAT
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5538_936-5537insAAAT
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5538_459-5537insAAAT
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala323LysfsTer9
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

4-41640979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640979
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640979
    reference: chr 4
allele count: 3
allele frequency: 2.550630005611386e-5
allele num: 117618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.966C>T
  hgvsp: ENST00000512632.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.504C>T
  hgvsp: ENST00000396595.3:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.470C>T
  hgvsp: ENST00000508466.1:c.470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5538C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.966C>T
  hgvsp: ENST00000313860.7:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.966C>T
  hgvsp: ENST00000512946.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.966C>T
  hgvsp: ENST00000508501.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5538C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.489C>T
  hgvsp: ENST00000511496.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2121C>T
  hgvsp: ENST00000503057.1:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5538C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5538C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5538C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp322Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

4-41640980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640980
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640980
    reference: chr 4
allele count: 5
allele frequency: 4.253509145044662e-5
allele num: 117550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.967G>A
  hgvsp: ENSP00000424645.1:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2122G>A
  hgvsp: ENSP00000425631.1:p.Ala708Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.471G>A
  hgvsp: ENSP00000421656.1:p.Ala158Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.490G>A
  hgvsp: ENSP00000421242.1:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.967G>A
  hgvsp: ENSP00000427045.1:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.505G>A
  hgvsp: ENSP00000379840.3:p.Ala169Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.967G>A
  hgvsp: ENSP00000424825.1:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.967G>A
  hgvsp: ENSP00000316891.7:p.Ala323Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5537G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5537G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5537G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5537G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5537G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala323Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

4-41640982-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640982
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640981
    reference: chr 4
allele count: 1
allele frequency: 8.522824123001398e-6
allele num: 117332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.970delG
  hgvsp: ENSP00000424645.1:p.Glu324ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.970delG
  hgvsp: ENSP00000316891.7:p.Glu324ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.508delG
  hgvsp: ENSP00000379840.3:p.Glu170ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5534delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5534delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.970delG
  hgvsp: ENSP00000424825.1:p.Glu324ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.970delG
  hgvsp: ENSP00000427045.1:p.Glu324ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.493delG
  hgvsp: ENSP00000421242.1:p.Glu165ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5534delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.474delG
  hgvsp: ENSP00000421656.1:p.Glu159ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5534delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5534delG
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2125delG
  hgvsp: ENSP00000425631.1:p.Glu709ArgfsTer29
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu324ArgfsTer29
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: AG
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

4-41640983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640983
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640983
    reference: chr 4
allele count: 1
allele frequency: 8.527620964303379e-6
allele num: 117266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.493G>A
  hgvsp: ENSP00000421242.1:p.Glu165Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5534G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.970G>A
  hgvsp: ENSP00000316891.7:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.474G>A
  hgvsp: ENSP00000421656.1:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5534G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.508G>A
  hgvsp: ENSP00000379840.3:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.970G>A
  hgvsp: ENSP00000424645.1:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5534G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5534G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2125G>A
  hgvsp: ENSP00000425631.1:p.Glu709Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.970G>A
  hgvsp: ENSP00000424825.1:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.970G>A
  hgvsp: ENSP00000427045.1:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5534G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu324Lys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

4-41640985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640985
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640985
    reference: chr 4
allele count: 1
allele frequency: 8.537813978109045e-6
allele num: 117126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5532G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5532G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5532G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+1G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5532G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5532G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.971+1G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-41640986-T-TAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640986
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640988
    reference: chr 4
allele count: 1
allele frequency: 8.546132020647455e-6
allele num: 117012
alternate allele: TAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5530_495-5529insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+3_509+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+3_971+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+3_971+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+3_475+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5530_936-5529insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5530_474-5529insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+3_971+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+3_2126+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+3_494+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5530_474-5529insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+3_971+4insCA
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5530_459-5529insCA
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.971+3_971+4insCA
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

4-41640992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640992
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640992
    reference: chr 4
allele count: 1
allele frequency: 8.575152637716951e-6
allele num: 116616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5525G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5525G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5525G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5525G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5525G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+8G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+8G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.971+8G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/4-41640993-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640993
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640993
    reference: chr 4
allele count: 1
allele frequency: 8.588261564094195e-6
allele num: 116438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5524C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5524C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5524C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5524C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5524C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+9C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+9C>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

4-41640995-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640995
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640995
    reference: chr 4
allele count: 3
allele frequency: 2.581266885787545e-5
allele num: 116222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5522T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5522T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5522T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5522T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5522T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+11T>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+11T>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

4-41640997-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41640997
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41640997
    reference: chr 4
allele count: 1
allele frequency: 8.617420978249629e-6
allele num: 116044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5520G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5520G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5520G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5520G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5520G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+13G>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+13G>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

4-41641011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41641011
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41641011
    reference: chr 4
allele count: 2
allele frequency: 1.742585299550413e-5
allele num: 114772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5506A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5506A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5506A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5506A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+27A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5506A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum

4-41641013-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41641013
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41641013
    reference: chr 4
allele count: 2
allele frequency: 1.745474856434693e-5
allele num: 114582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5504A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5504A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5504A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5504A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+29A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5504A>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+29A>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

4-41641034-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41641034
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41641034
    reference: chr 4
allele count: 2
allele frequency: 1.776609163750067e-5
allele num: 112574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-5483C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.475+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.971+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2126+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.509+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-5483C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.971+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.971+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-5483C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-5483C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.971+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.494+50C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-5483C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

4-41646466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646466
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646466
    reference: chr 4
allele count: 152
allele frequency: 1.391941391941392e-2
allele num: 10920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2127-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.972-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.510-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.495-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.476-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.972-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.972-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.972-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-51G>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-51G>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36360
  bin: 2.5e0
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 7.5e0
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

4-41646467-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646467
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646467
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 10872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2127-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.972-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.972-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.510-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.495-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.972-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.972-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-50C>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.476-50C>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36716
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-41646499-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646499
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646499
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 13526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.476-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.972-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.510-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.972-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.972-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2127-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.972-18C>A
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.495-18C>A
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17427
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

4-41646502-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646502
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646502
    reference: chr 4
allele count: 4
allele frequency: 2.725166916473634e-4
allele num: 14678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.972-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.972-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.972-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.476-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.972-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.510-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.495-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2127-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-15T>G
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-15T>G
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

4-41646507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646507
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646507
    reference: chr 4
allele count: 1
allele frequency: 6.282196255811031e-5
allele num: 15918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.972-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2127-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.495-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.972-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.510-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.972-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.476-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.972-10C>T
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-10C>T
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27737
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

4-41646511-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646511
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646509
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 17222
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.972-4_972-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.972-4_972-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.474-4_474-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2127-4_2127-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.495-4_495-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.510-4_510-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.476-4_476-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.972-4_972-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.936-4_936-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.972-4_972-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.459-4_459-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.495-4_495-3delTC
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.474-4_474-3delTC
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25328
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.972-4_972-3delTC
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: ACT
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-41646523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646523
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646523
    reference: chr 4
allele count: 23
allele frequency: 1.027060819862463e-3
allele num: 22394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.978C>T
  hgvsp: ENST00000512632.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.978C>T
  hgvsp: ENST00000512946.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.978C>T
  hgvsp: ENST00000313860.7:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.942C>T
  hgvsp: ENST00000512820.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.465C>T
  hgvsp: ENST00000513024.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.482C>T
  hgvsp: ENST00000508466.1:c.482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.480C>T
  hgvsp: ENST00000381753.4:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.978C>T
  hgvsp: ENST00000508501.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.480C>T
  hgvsp: ENST00000509277.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2133C>T
  hgvsp: ENST00000503057.1:c.2133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.501C>T
  hgvsp: ENST00000511496.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.501C>T
  hgvsp: ENST00000514096.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.516C>T
  hgvsp: ENST00000396595.3:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16587
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31991
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr326Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

4-41646527-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646527
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646527
    reference: chr 4
allele count: 2
allele frequency: 8.163931749530574e-5
allele num: 24498
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.982A>G
  hgvsp: ENSP00000316891.7:p.Met328Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.520A>G
  hgvsp: ENSP00000379840.3:p.Met174Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.486A>G
  hgvsp: ENSP00000421656.1:p.Met163Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.484A>G
  hgvsp: ENSP00000371172.4:p.Met162Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.469A>G
  hgvsp: ENSP00000425222.1:p.Met157Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2137A>G
  hgvsp: ENSP00000425631.1:p.Met713Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.946A>G
  hgvsp: ENSP00000424437.1:p.Met316Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.982A>G
  hgvsp: ENSP00000424645.1:p.Met328Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.484A>G
  hgvsp: ENSP00000422864.1:p.Met162Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.505A>G
  hgvsp: ENSP00000421242.1:p.Met169Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.982A>G
  hgvsp: ENSP00000424825.1:p.Met328Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.982A>G
  hgvsp: ENSP00000427045.1:p.Met328Val
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.505A>G
  hgvsp: ENSP00000426334.1:p.Met169Val
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met328Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

4-41646535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646535
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646535
    reference: chr 4
allele count: 1
allele frequency: 3.581148832545481e-5
allele num: 27924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.492C>T
  hgvsp: ENST00000509277.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.477C>T
  hgvsp: ENST00000513024.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.528C>T
  hgvsp: ENST00000396595.3:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.990C>T
  hgvsp: ENST00000508501.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2145C>T
  hgvsp: ENST00000503057.1:c.2145C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.954C>T
  hgvsp: ENST00000512820.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.990C>T
  hgvsp: ENST00000313860.7:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.990C>T
  hgvsp: ENST00000512632.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.990C>T
  hgvsp: ENST00000512946.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.513C>T
  hgvsp: ENST00000511496.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.513C>T
  hgvsp: ENST00000514096.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.494C>T
  hgvsp: ENST00000508466.1:c.494C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.492C>T
  hgvsp: ENST00000381753.4:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp330Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

4-41646539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646539
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646539
    reference: chr 4
allele count: 1
allele frequency: 3.360215053763441e-5
allele num: 29760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.496C>T
  hgvsp: ENSP00000422864.1:p.Arg166Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.958C>T
  hgvsp: ENSP00000424437.1:p.Arg320Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.994C>T
  hgvsp: ENSP00000316891.7:p.Arg332Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2149C>T
  hgvsp: ENSP00000425631.1:p.Arg717Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.498C>T
  hgvsp: ENSP00000421656.1:p.Arg167Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.994C>T
  hgvsp: ENSP00000424645.1:p.Arg332Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.481C>T
  hgvsp: ENSP00000425222.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.517C>T
  hgvsp: ENSP00000426334.1:p.Arg173Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.994C>T
  hgvsp: ENSP00000427045.1:p.Arg332Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.532C>T
  hgvsp: ENSP00000379840.3:p.Arg178Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.994C>T
  hgvsp: ENSP00000424825.1:p.Arg332Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.496C>T
  hgvsp: ENSP00000371172.4:p.Arg166Trp
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.517C>T
  hgvsp: ENSP00000421242.1:p.Arg173Trp
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg332Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/4-41646552-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646552
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646552
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 40510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.530A>C
  hgvsp: ENSP00000426334.1:p.Glu177Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.1007A>C
  hgvsp: ENSP00000316891.7:p.Glu336Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.494A>C
  hgvsp: ENSP00000425222.1:p.Glu165Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.971A>C
  hgvsp: ENSP00000424437.1:p.Glu324Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.530A>C
  hgvsp: ENSP00000421242.1:p.Glu177Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2162A>C
  hgvsp: ENSP00000425631.1:p.Glu721Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.1007A>C
  hgvsp: ENSP00000424645.1:p.Glu336Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.1007A>C
  hgvsp: ENSP00000424825.1:p.Glu336Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.509A>C
  hgvsp: ENSP00000422864.1:p.Glu170Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.509A>C
  hgvsp: ENSP00000371172.4:p.Glu170Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.511A>C
  hgvsp: ENSP00000421656.1:p.Glu171Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.1007A>C
  hgvsp: ENSP00000427045.1:p.Glu336Ala
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.545A>C
  hgvsp: ENSP00000379840.3:p.Glu182Ala
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 35368
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu336Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

4-41646554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646554
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646554
    reference: chr 4
allele count: 1
allele frequency: 2.392230036840342e-5
allele num: 41802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.532G>A
  hgvsp: ENSP00000421242.1:p.Ala178Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2164G>A
  hgvsp: ENSP00000425631.1:p.Ala722Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.1009G>A
  hgvsp: ENSP00000427045.1:p.Ala337Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.513G>A
  hgvsp: ENSP00000421656.1:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.973G>A
  hgvsp: ENSP00000424437.1:p.Ala325Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.1009G>A
  hgvsp: ENSP00000424645.1:p.Ala337Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.511G>A
  hgvsp: ENSP00000371172.4:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.1009G>A
  hgvsp: ENSP00000424825.1:p.Ala337Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.1009G>A
  hgvsp: ENSP00000316891.7:p.Ala337Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.532G>A
  hgvsp: ENSP00000426334.1:p.Ala178Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.511G>A
  hgvsp: ENSP00000422864.1:p.Ala171Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.547G>A
  hgvsp: ENSP00000379840.3:p.Ala183Thr
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.496G>A
  hgvsp: ENSP00000425222.1:p.Ala166Thr
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala337Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/4-41646556-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41646556
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 41646556
    reference: chr 4
allele count: 1
allele frequency: 2.296738631143776e-5
allele num: 43540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424645
  ensembl transcript: ENST00000512946
  gene symbol: LIMCH1
  hgvsc: ENST00000512946.1:c.1011C>A
  hgvsp: ENST00000512946.1:c.1011C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000422864
  ensembl transcript: ENST00000509277
  gene symbol: LIMCH1
  hgvsc: ENST00000509277.1:c.513C>A
  hgvsp: ENST00000509277.1:c.513C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425222
  ensembl transcript: ENST00000513024
  gene symbol: LIMCH1
  hgvsc: ENST00000513024.1:c.498C>A
  hgvsp: ENST00000513024.1:c.498C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000425631
  ensembl transcript: ENST00000503057
  gene symbol: LIMCH1
  hgvsc: ENST00000503057.1:c.2166C>A
  hgvsp: ENST00000503057.1:c.2166C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424437
  ensembl transcript: ENST00000512820
  gene symbol: LIMCH1
  hgvsc: ENST00000512820.1:c.975C>A
  hgvsp: ENST00000512820.1:c.975C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000371172
  ensembl transcript: ENST00000381753
  gene symbol: LIMCH1
  hgvsc: ENST00000381753.4:c.513C>A
  hgvsp: ENST00000381753.4:c.513C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000424825
  ensembl transcript: ENST00000508501
  gene symbol: LIMCH1
  hgvsc: ENST00000508501.1:c.1011C>A
  hgvsp: ENST00000508501.1:c.1011C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000379840
  ensembl transcript: ENST00000396595
  gene symbol: LIMCH1
  hgvsc: ENST00000396595.3:c.549C>A
  hgvsp: ENST00000396595.3:c.549C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000316891
  ensembl transcript: ENST00000313860
  gene symbol: LIMCH1
  hgvsc: ENST00000313860.7:c.1011C>A
  hgvsp: ENST00000313860.7:c.1011C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000426334
  ensembl transcript: ENST00000514096
  gene symbol: LIMCH1
  hgvsc: ENST00000514096.1:c.534C>A
  hgvsp: ENST00000514096.1:c.534C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421242
  ensembl transcript: ENST00000511496
  gene symbol: LIMCH1
  hgvsc: ENST00000511496.1:c.534C>A
  hgvsp: ENST00000511496.1:c.534C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000427045
  ensembl transcript: ENST00000512632
  gene symbol: LIMCH1
  hgvsc: ENST00000512632.1:c.1011C>A
  hgvsp: ENST00000512632.1:c.1011C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064042
  ensembl protein: ENSP00000421656
  ensembl transcript: ENST00000508466
  gene symbol: LIMCH1
  hgvsc: ENST00000508466.1:c.515C>A
  hgvsp: ENST00000508466.1:c.515C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29191
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala337Ala
num of homozygotes: 0
population: European (Non-Finnish)
reference allele: C

GenotypeDepth
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.006e0

QD
type: SiteQuality
SIO_000300: 1.177e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

DP
type: SiteQuality
SIO_000300: 2.68111e5

VQSLOD
type: SiteQuality
SIO_000300: -6.257e-1

GenotypeDepth
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.669e0

QD
type: SiteQuality
SIO_000300: 1.862e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

DP
type: SiteQuality
SIO_000300: 2.67468e5

GenotypeDepth
all individuals: 43
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 795
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.027652086475615e-4
allele num: 3978
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 6.281407035175879e-4
allele num: 1592
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

QD
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InbreedingCoeff
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SIO_000300: -3.91e-2

FS
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MQ
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MQRankSum
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ClippingRankSum
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SIO_000300: -1.204e0

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.66979e5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 4.672897196261682e-3
allele num: 214
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

MQRankSum
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SIO_000300: 1.79e0

DP
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QD
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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SIO_000300: 1.1262e1

BaseQRankSum
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SIO_000300: 8.51e-1

ClippingRankSum
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SIO_000300: 5.1e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.581311306143521e-4
allele num: 3874
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 6.273525721455458e-4
allele num: 1594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

MQRankSum
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BaseQRankSum
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SIO_000300: -1.456e0

InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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QD
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MQ
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SIO_000300: 6.0e1

DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.565418163160595e-4
allele num: 3898
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.61e0

MQRankSum
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SIO_000300: -1.115e0

DP
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SIO_000300: 2.10956e5

MQ
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SIO_000300: 6.0e1

VQSLOD
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QD
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SIO_000300: 2.53e0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -3.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

ClippingRankSum
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SIO_000300: -6.19e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.792114695340502e-3
allele num: 558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

DP
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
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SIO_000300: 4.89e-1

GenotypeDepth
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variant carriers: 148

GenotypeDepth
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variant carriers: 177

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 11
allele frequency: 5.445544554455446e-2
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
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allele count: 319
allele frequency: 8.225889633831872e-2
allele num: 3878
num of homozygotes: 14

Latino
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allele frequency: 1.397849462365591e-1
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num of homozygotes: 2

African
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allele frequency: 5.482142857142858e-1
allele num: 560
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South Asian
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allele count: 1023
allele frequency: 1.34251968503937e-1
allele num: 7620
num of homozygotes: 83

European (Finnish)
type: Population
allele count: 61
allele frequency: 3.831658291457286e-2
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 26
allele frequency: 1.413043478260869e-1
allele num: 184
num of homozygotes: 2

MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
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FS
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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African
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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QD
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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African
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South Asian
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European (Finnish)
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FS
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SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Other
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.157297576070139e-4
allele num: 3878
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.977e0

VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.93706e5

BaseQRankSum
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SIO_000300: 1.86e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

VQSLOD
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FS
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SIO_000300: 1.2343e1

QD
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MQ
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SIO_000300: 5.961e1

BaseQRankSum
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MQRankSum
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SIO_000300: 6.96e-1

InbreedingCoeff
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SIO_000300: -2.56e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
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SIO_000300: 1.93134e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.314060446780552e-4
allele num: 7610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
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SIO_000300: 9.370000000000001e-1

MQ
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SIO_000300: 5.938e1

FS
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SIO_000300: 3.07e0

ReadPosRankSum
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SIO_000300: 9.370000000000001e-1

VQSLOD
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SIO_000300: 3.9e-1

DP
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SIO_000300: 1.91999e5

ClippingRankSum
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SIO_000300: -1.8e-1

QD
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SIO_000300: 1.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.35e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 566
bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 8.008542445274959e-4
allele num: 7492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
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SIO_000300: 1.87509e5

QD
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SIO_000300: 1.311e1

ClippingRankSum
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SIO_000300: 4.55e-1

FS
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SIO_000300: 3.4e0

InbreedingCoeff
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SIO_000300: -2.13e-2

ReadPosRankSum
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SIO_000300: -4.31e-1

VQSLOD
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SIO_000300: 1.72e0

BaseQRankSum
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SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.011e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 525
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variant carriers: 36

Latino
type: Population
allele count: 1
allele frequency: 5.555555555555556e-3
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.376344086021505e-4
allele num: 3720
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
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allele count: 33
allele frequency: 4.491017964071856e-3
allele num: 7348
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.438e1

ReadPosRankSum
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SIO_000300: 5.28e-1

InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 9.05e-1

MQRankSum
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SIO_000300: 1.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
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SIO_000300: 1.82629e5

GenotypeDepth
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variant carriers: 306

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1429

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

East Asian
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allele count: 10
allele frequency: 5.376344086021505e-2
allele num: 186
num of homozygotes: 0

African
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allele count: 247
allele frequency: 4.523809523809524e-1
allele num: 546
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South Asian
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allele count: 1016
allele frequency: 1.434217955957086e-1
allele num: 7084
num of homozygotes: 84

European (Non-Finnish)
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allele count: 318
allele frequency: 8.833333333333333e-2
allele num: 3600
num of homozygotes: 15

Other
type: Population
allele count: 25
allele frequency: 1.404494382022472e-1
allele num: 178
num of homozygotes: 2

Latino
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allele count: 26
allele frequency: 1.529411764705882e-1
allele num: 170
num of homozygotes: 2

European (Finnish)
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allele count: 61
allele frequency: 3.831658291457286e-2
allele num: 1592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.618e1

ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 6.38e-1

ClippingRankSum
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SIO_000300: 5.3e-2

VQSLOD
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3428
num of homozygotes: 0

QD
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SIO_000300: 8.859999999999999e0

InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: 4.9e-1

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.46904e5

GenotypeDepth
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variant carriers: 67

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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bin: 4.75e1
variant carriers: 23

GenotypeQuality
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variant carriers: 30

GenotypeQuality
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bin: 1.75e1
variant carriers: 14

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 23

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 17

GenotypeQuality
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bin: 8.25e1
variant carriers: 10

GenotypeQuality
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variant carriers: 33

GenotypeQuality
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variant carriers: 37

GenotypeQuality
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bin: 2.75e1
variant carriers: 10

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 1286

GenotypeQuality
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bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 29

Latino
type: Population
allele count: 26
allele frequency: 1.645569620253164e-1
allele num: 158
num of homozygotes: 2

African
type: Population
allele count: 241
allele frequency: 4.581749049429658e-1
allele num: 526
num of homozygotes: 57

East Asian
type: Population
allele count: 10
allele frequency: 5.617977528089887e-2
allele num: 178
num of homozygotes: 0

Other
type: Population
allele count: 24
allele frequency: 1.379310344827586e-1
allele num: 174
num of homozygotes: 2

European (Finnish)
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allele count: 61
allele frequency: 3.831658291457286e-2
allele num: 1592
num of homozygotes: 0

South Asian
type: Population
allele count: 961
allele frequency: 1.473926380368098e-1
allele num: 6520
num of homozygotes: 82

European (Non-Finnish)
type: Population
allele count: 304
allele frequency: 8.935920047031158e-2
allele num: 3402
num of homozygotes: 13

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

DP
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SIO_000300: 1.44513e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
SIO_000300: 1.637e1

VQSLOD
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SIO_000300: 4.78e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
all individuals: 4757
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6489
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GenotypeQuality
all individuals: 2856
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 1435
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.201e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.428896e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
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SIO_000300: -1.89e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeDepth
all individuals: 4996
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 153
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1151
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 2852
bin: 9.25e1
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GenotypeQuality
all individuals: 1435
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variant carriers: 0

GenotypeQuality
all individuals: 2533
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variant carriers: 0

GenotypeQuality
all individuals: 41228
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

DP
type: SiteQuality
SIO_000300: 3.428244e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.343e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.202e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 6.879999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

GenotypeDepth
all individuals: 6037
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4995
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variant carriers: 2

GenotypeDepth
all individuals: 886
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 6507
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 1143
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 2559
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variant carriers: 0

GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 2531
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41227
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.51e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

MQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 3.427775e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 1623
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6037
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 6466
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41227
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1140
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1435
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variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.427151e6

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeDepth
all individuals: 1625
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2414
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 30
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GenotypeQuality
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GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2850
bin: 9.25e1
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GenotypeQuality
all individuals: 1108
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.418214e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

QD
type: SiteQuality
SIO_000300: 1.513e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

GenotypeDepth
all individuals: 4374
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.32e0

VQSLOD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.415936e6

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.02028837181301e-5
allele num: 66442
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -1.59e-1

DP
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQ
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SIO_000300: 5.985e1

MQRankSum
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SIO_000300: 6.11e-1

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -2.1e-2

QD
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SIO_000300: 1.364e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 9

GenotypeDepth
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variant carriers: 168

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 210

GenotypeQuality
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variant carriers: 0

Other
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allele count: 4
allele frequency: 4.464285714285714e-3
allele num: 896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15532
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.892402622445044e-4
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 69
allele frequency: 1.043241608708799e-2
allele num: 6614
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 135
allele frequency: 2.032887603903144e-3
allele num: 66408
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -3.39e-1

VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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BaseQRankSum
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SIO_000300: 8.159999999999999e-1

MQRankSum
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SIO_000300: 3.93e-1

InbreedingCoeff
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SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.18e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.289656951250967e-4
allele num: 15508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ReadPosRankSum
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SIO_000300: -8.139999999999999e-1

InbreedingCoeff
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SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.571e0

ClippingRankSum
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QD
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SIO_000300: 1.121e1

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 3.390746e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
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MQ
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: 2.02e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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Latino
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allele frequency: 8.658008658008658e-5
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num of homozygotes: 0

Other
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66258
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African
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allele frequency: 4.816955684007707e-4
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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DP
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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Latino
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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allele num: 11542
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South Asian
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East Asian
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African
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Other
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ClippingRankSum
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QD
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VQSLOD
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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African
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Other
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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Other
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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East Asian
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Other
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African
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European (Non-Finnish)
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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QD
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele num: 65698
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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South Asian
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Latino
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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East Asian
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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African
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VQSLOD
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DP
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MQ
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10322
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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Other
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528911720637251e-5
allele num: 65406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
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SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
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SIO_000300: 3.376e0

QD
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SIO_000300: 1.263e1

ReadPosRankSum
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SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
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SIO_000300: -1.193e0

DP
type: SiteQuality
SIO_000300: 3.325909e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.940993788819876e-4
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
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SIO_000300: 9.73e-1

BaseQRankSum
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SIO_000300: 6.25e0

VQSLOD
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SIO_000300: 4.05e0

InbreedingCoeff
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SIO_000300: -1.3e-3

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.317608e6

MQRankSum
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SIO_000300: 5.0e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319647413593134e-4
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.58e0

FS
type: SiteQuality
SIO_000300: 6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.184e0

DP
type: SiteQuality
SIO_000300: 3.315997e6

MQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.097413659594239e-5
allele num: 64570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 3.300648e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

FS
type: SiteQuality
SIO_000300: 7.731e0

QD
type: SiteQuality
SIO_000300: 1.546e1

GenotypeDepth
all individuals: 22
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variant carriers: 0

GenotypeDepth
all individuals: 27
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 699
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variant carriers: 142

GenotypeQuality
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variant carriers: 30

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 29

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 25

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 9

GenotypeQuality
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bin: 5.25e1
variant carriers: 22

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 5

South Asian
type: Population
allele count: 9
allele frequency: 3.275109170305677e-3
allele num: 2748
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 1.954976303317536e-2
allele num: 1688
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 8.875739644970414e-3
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 107
allele frequency: 1.961143695014663e-2
allele num: 5456
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
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SIO_000300: 2.18e0

ClippingRankSum
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SIO_000300: 2.49e-1

ReadPosRankSum
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MQRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

FS
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
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QD
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.27e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 404
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 9.541984732824427e-4
allele num: 4192
num of homozygotes: 0

East Asian
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.324152542372881e-4
allele num: 7552
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

East Asian
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 23
allele frequency: 8.679245283018867e-3
allele num: 2650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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FS
type: SiteQuality
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 7798
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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African
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2190
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.619e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 6.9485e5

QD
type: SiteQuality
SIO_000300: 4.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeDepth
all individuals: 4213
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 443
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.113833815994654e-4
allele num: 8978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.05548e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.325e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

GenotypeDepth
all individuals: 89
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3740
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1501
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.233700254022015e-5
allele num: 23620
num of homozygotes: 0