4-89652622-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89652622
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89652622
    reference: chr 4
allele count: 1
allele frequency: 9.355237061707144e-6
allele num: 106892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.472-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.559-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1750-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1602-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1782-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1824-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1866-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2844-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.559-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.551T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1782-43T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1442-43T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS

4-89653103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653103
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653103
    reference: chr 4
allele count: 7108
allele frequency: 6.417247481131054e-2
allele num: 110764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.70C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.911C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558+50C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558+50C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 1.25e1
  variant carriers: 641
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 3.75e1
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 11717
  bin: 2.25e1
  variant carriers: 1276
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 1.75e1
  variant carriers: 982
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 7.5e0
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 3.25e1
  variant carriers: 906
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 2.75e1
  variant carriers: 1198
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
num of homozygotes: 284
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

4-89653107-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653107
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653107
    reference: chr 4
allele count: 56
allele frequency: 5.031446540880503e-4
allele num: 111300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.66C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558+46C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.907C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749+46C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14206
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/4-89653120-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653120
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653120
    reference: chr 4
allele count: 2
allele frequency: 1.773772992532416e-5
allele num: 112754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.53T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.894T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558+33T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471+33T>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20023
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

4-89653120-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653120
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653120
    reference: chr 4
allele count: 1
allele frequency: 8.868864962662078e-6
allele num: 112754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.894T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.53T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471+33T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749+33T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/4-89653137-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653136
    reference: chr 4
allele count: 1
allele frequency: 8.619352169490942e-6
allele num: 116018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.35delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.876delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558+15delT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471+15delT
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: CA
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

4-89653141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653141
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653141
    reference: chr 4
allele count: 1
allele frequency: 8.54978540038645e-6
allele num: 116962
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.32T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.873T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749+12T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558+12T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-89653153-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653153
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653153
    reference: chr 4
allele count: 7
allele frequency: 5.897915508147549e-5
allele num: 118686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.20T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1865T>C
  hgvsp: ENSP00000421562.1:p.Ile622Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1781T>C
  hgvsp: ENSP00000423252.1:p.Ile594Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.861T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.471T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.558T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1601T>C
  hgvsp: ENSP00000421914.1:p.Ile534Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1823T>C
  hgvsp: ENSP00000427189.1:p.Ile608Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1781T>C
  hgvsp: ENSP00000378450.2:p.Ile594Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2843T>C
  hgvsp: ENSP00000264344.5:p.Ile948Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1749T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1441T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.558T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile948Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-89653154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653154
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653154
    reference: chr 4
allele count: 3
allele frequency: 2.526017985248055e-5
allele num: 118764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1864A>G
  hgvsp: ENSP00000421562.1:p.Ile622Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.470A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1822A>G
  hgvsp: ENSP00000427189.1:p.Ile608Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.557A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.19A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1748A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1600A>G
  hgvsp: ENSP00000421914.1:p.Ile534Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2842A>G
  hgvsp: ENSP00000264344.5:p.Ile948Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.557A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1440A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1780A>G
  hgvsp: ENSP00000423252.1:p.Ile594Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1780A>G
  hgvsp: ENSP00000378450.2:p.Ile594Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.860A>G
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile948Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-89653155-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653155
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653155
    reference: chr 4
allele count: 146
allele frequency: 1.228129205921938e-3
allele num: 118880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1821A>C
  hgvsp: ENST00000503556.1:c.1821A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.556A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.469A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1439A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1779A>C
  hgvsp: ENST00000395002.2:c.1779A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000509478
  gene symbol: FAM13A
  hgvsc: ENST00000509478.1:n.18A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.556A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1779A>C
  hgvsp: ENST00000513837.1:c.1779A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1747A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2841A>C
  hgvsp: ENST00000264344.5:c.2841A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.859A>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1599A>C
  hgvsp: ENST00000511976.1:c.1599A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1863A>C
  hgvsp: ENST00000508369.1:c.1863A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 23245
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 15341
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: c.2841A>C
num of homozygotes: 2
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-89653173-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653173
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653173
    reference: chr 4
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.451A>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1581A>T
  hgvsp: ENST00000511976.1:c.1581A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2823A>T
  hgvsp: ENST00000264344.5:c.2823A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1421A>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.538A>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.538A>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1803A>T
  hgvsp: ENST00000503556.1:c.1803A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1729A>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1845A>T
  hgvsp: ENST00000508369.1:c.1845A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1761A>T
  hgvsp: ENST00000395002.2:c.1761A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.841A>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1761A>T
  hgvsp: ENST00000513837.1:c.1761A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser941Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

4-89653185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653185
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653185
    reference: chr 4
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1749C>T
  hgvsp: ENST00000395002.2:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.526C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1409C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1833C>T
  hgvsp: ENST00000508369.1:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1569C>T
  hgvsp: ENST00000511976.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.829C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1717C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.526C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2811C>T
  hgvsp: ENST00000264344.5:c.2811C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1791C>T
  hgvsp: ENST00000503556.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1749C>T
  hgvsp: ENST00000513837.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.439C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16088
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp937Asp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

4-89653192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653192
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653192
    reference: chr 4
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1562G>A
  hgvsp: ENSP00000421914.1:p.Ser521Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2804G>A
  hgvsp: ENSP00000264344.5:p.Ser935Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1742G>A
  hgvsp: ENSP00000378450.2:p.Ser581Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1826G>A
  hgvsp: ENSP00000421562.1:p.Ser609Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.519G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.519G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1784G>A
  hgvsp: ENSP00000427189.1:p.Ser595Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1742G>A
  hgvsp: ENSP00000423252.1:p.Ser581Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.822G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1402G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1710G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.432G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser935Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

4-89653196-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653196
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653195
    reference: chr 4
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1779delA
  hgvsp: ENSP00000427189.1:p.Lys593AsnfsTer26
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2799delA
  hgvsp: ENSP00000264344.5:p.Lys933AsnfsTer26
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.514delA
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1705delA
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1737delA
  hgvsp: ENSP00000378450.2:p.Lys579AsnfsTer26
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.817delA
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.514delA
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1737delA
  hgvsp: ENSP00000423252.1:p.Lys579AsnfsTer26
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.427delA
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1557delA
  hgvsp: ENSP00000421914.1:p.Lys519AsnfsTer26
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1821delA
  hgvsp: ENSP00000421562.1:p.Lys607AsnfsTer26
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1397delA
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys933AsnfsTer26
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: AT
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-89653201-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653201
    reference: chr 4
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.510C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1553C>A
  hgvsp: ENSP00000421914.1:p.Ser518Ter
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1733C>A
  hgvsp: ENSP00000378450.2:p.Ser578Ter
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.510C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1393C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1817C>A
  hgvsp: ENSP00000421562.1:p.Ser606Ter
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.813C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1701C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.423C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2795C>A
  hgvsp: ENSP00000264344.5:p.Ser932Ter
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1775C>A
  hgvsp: ENSP00000427189.1:p.Ser592Ter
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1733C>A
  hgvsp: ENSP00000423252.1:p.Ser578Ter
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser932Ter
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

4-89653205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653205
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653205
    reference: chr 4
allele count: 26
allele frequency: 2.143057318540743e-4
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1549C>T
  hgvsp: ENSP00000421914.1:p.Pro517Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1729C>T
  hgvsp: ENSP00000378450.2:p.Pro577Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1389C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1813C>T
  hgvsp: ENSP00000421562.1:p.Pro605Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.809C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1697C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.506C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1729C>T
  hgvsp: ENSP00000423252.1:p.Pro577Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2791C>T
  hgvsp: ENSP00000264344.5:p.Pro931Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.506C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1771C>T
  hgvsp: ENSP00000427189.1:p.Pro591Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.419C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro931Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

4-89653205-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653205
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653205
    reference: chr 4
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1389C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1729C>A
  hgvsp: ENSP00000378450.2:p.Pro577Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1771C>A
  hgvsp: ENSP00000427189.1:p.Pro591Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1549C>A
  hgvsp: ENSP00000421914.1:p.Pro517Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1729C>A
  hgvsp: ENSP00000423252.1:p.Pro577Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.506C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.506C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1697C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.419C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1813C>A
  hgvsp: ENSP00000421562.1:p.Pro605Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.809C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2791C>A
  hgvsp: ENSP00000264344.5:p.Pro931Thr
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro931Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

4-89653214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653214
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653214
    reference: chr 4
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1720G>A
  hgvsp: ENSP00000378450.2:p.Asp574Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.497G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.497G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1540G>A
  hgvsp: ENSP00000421914.1:p.Asp514Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.410G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1380G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1762G>A
  hgvsp: ENSP00000427189.1:p.Asp588Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1720G>A
  hgvsp: ENSP00000423252.1:p.Asp574Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1688G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1804G>A
  hgvsp: ENSP00000421562.1:p.Asp602Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2782G>A
  hgvsp: ENSP00000264344.5:p.Asp928Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.800G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp928Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-89653218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653218
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653218
    reference: chr 4
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.493G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1376G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2778G>A
  hgvsp: ENSP00000264344.5:p.Met926Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.796G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1716G>A
  hgvsp: ENSP00000378450.2:p.Met572Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.493G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1684G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1800G>A
  hgvsp: ENSP00000421562.1:p.Met600Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1758G>A
  hgvsp: ENSP00000427189.1:p.Met586Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1536G>A
  hgvsp: ENSP00000421914.1:p.Met512Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1716G>A
  hgvsp: ENSP00000423252.1:p.Met572Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.406G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met926Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-89653220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653220
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653220
    reference: chr 4
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.491A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2776A>G
  hgvsp: ENSP00000264344.5:p.Met926Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1714A>G
  hgvsp: ENSP00000423252.1:p.Met572Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.404A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.491A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1682A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1798A>G
  hgvsp: ENSP00000421562.1:p.Met600Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.794A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1534A>G
  hgvsp: ENSP00000421914.1:p.Met512Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1374A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1714A>G
  hgvsp: ENSP00000378450.2:p.Met572Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1756A>G
  hgvsp: ENSP00000427189.1:p.Met586Val
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met926Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

4-89653228-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653228
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653228
    reference: chr 4
allele count: 3
allele frequency: 2.471821237888076e-5
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1706T>C
  hgvsp: ENSP00000378450.2:p.Ile569Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2768T>C
  hgvsp: ENSP00000264344.5:p.Ile923Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1366T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1674T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1526T>C
  hgvsp: ENSP00000421914.1:p.Ile509Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1790T>C
  hgvsp: ENSP00000421562.1:p.Ile597Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.483T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1748T>C
  hgvsp: ENSP00000427189.1:p.Ile583Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.786T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.483T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1706T>C
  hgvsp: ENSP00000423252.1:p.Ile569Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.396T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile923Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/4-89653231-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653231
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653231
    reference: chr 4
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1671T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1523T>G
  hgvsp: ENSP00000421914.1:p.Phe508Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1363T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.480T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1745T>G
  hgvsp: ENSP00000427189.1:p.Phe582Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1787T>G
  hgvsp: ENSP00000421562.1:p.Phe596Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2765T>G
  hgvsp: ENSP00000264344.5:p.Phe922Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1703T>G
  hgvsp: ENSP00000378450.2:p.Phe568Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1703T>G
  hgvsp: ENSP00000423252.1:p.Phe568Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.480T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.783T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.393T>G
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Phe922Cys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

4-89653236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653236
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653236
    reference: chr 4
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1698T>C
  hgvsp: ENST00000513837.1:c.1698T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.475T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1666T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.475T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1698T>C
  hgvsp: ENST00000395002.2:c.1698T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.388T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2760T>C
  hgvsp: ENST00000264344.5:c.2760T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1358T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.778T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1740T>C
  hgvsp: ENST00000503556.1:c.1740T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1518T>C
  hgvsp: ENST00000511976.1:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1782T>C
  hgvsp: ENST00000508369.1:c.1782T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp920Asp
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

4-89653242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653242
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653242
    reference: chr 4
allele count: 265
allele frequency: 2.183478074584315e-3
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1512C>T
  hgvsp: ENST00000511976.1:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1352C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1734C>T
  hgvsp: ENST00000503556.1:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2754C>T
  hgvsp: ENST00000264344.5:c.2754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1692C>T
  hgvsp: ENST00000395002.2:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1692C>T
  hgvsp: ENST00000513837.1:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1776C>T
  hgvsp: ENST00000508369.1:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.772C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1660C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.382C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.469C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.469C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 9.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
hgvs: p.Asp918Asp
num of homozygotes: 1
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

4-89653250-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653250
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653250
    reference: chr 4
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1726G>A
  hgvsp: ENSP00000427189.1:p.Glu576Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1684G>A
  hgvsp: ENSP00000378450.2:p.Glu562Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2746G>A
  hgvsp: ENSP00000264344.5:p.Glu916Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1344G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.461G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1504G>A
  hgvsp: ENSP00000421914.1:p.Glu502Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1684G>A
  hgvsp: ENSP00000423252.1:p.Glu562Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.374G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.764G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1768G>A
  hgvsp: ENSP00000421562.1:p.Glu590Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.461G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1652G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu916Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

4-89653251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653251
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653251
    reference: chr 4
allele count: 7
allele frequency: 5.767392808885081e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.460C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1725C>T
  hgvsp: ENST00000503556.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.763C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2745C>T
  hgvsp: ENST00000264344.5:c.2745C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1503C>T
  hgvsp: ENST00000511976.1:c.1503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1683C>T
  hgvsp: ENST00000395002.2:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.373C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1767C>T
  hgvsp: ENST00000508369.1:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1343C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1651C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.460C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1683C>T
  hgvsp: ENST00000513837.1:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Phe915Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-89653257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653257
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653257
    reference: chr 4
allele count: 21315
allele frequency: 1.756402650054386e-1
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2739C>T
  hgvsp: ENST00000264344.5:c.2739C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.454C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1677C>T
  hgvsp: ENST00000395002.2:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1761C>T
  hgvsp: ENST00000508369.1:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1719C>T
  hgvsp: ENST00000503556.1:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.757C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.367C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.454C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1677C>T
  hgvsp: ENST00000513837.1:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1497C>T
  hgvsp: ENST00000511976.1:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1337C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1645C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 9.75e1
  variant carriers: 7179
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 621
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 6.25e1
  variant carriers: 1044
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.75e1
  variant carriers: 834
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 1641
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.75e1
  variant carriers: 1241
genotype depth: GenotypeDepth
  all individuals: 16562
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 3.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 9.25e1
  variant carriers: 1433
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 7.25e1
  variant carriers: 1434
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp913Asp
num of homozygotes: 2027
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

4-89653277-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653277
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653277
    reference: chr 4
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1657A>G
  hgvsp: ENSP00000378450.2:p.Ser553Gly
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1699A>G
  hgvsp: ENSP00000427189.1:p.Ser567Gly
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2719A>G
  hgvsp: ENSP00000264344.5:p.Ser907Gly
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1657A>G
  hgvsp: ENSP00000423252.1:p.Ser553Gly
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.434A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1625A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1477A>G
  hgvsp: ENSP00000421914.1:p.Ser493Gly
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1741A>G
  hgvsp: ENSP00000421562.1:p.Ser581Gly
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1317A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.347A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.737A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.241A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.434A>G
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser907Gly
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

4-89653280-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653280
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653280
    reference: chr 4
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1654T>A
  hgvsp: ENSP00000378450.2:p.Phe552Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.344T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2716T>A
  hgvsp: ENSP00000264344.5:p.Phe906Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1696T>A
  hgvsp: ENSP00000427189.1:p.Phe566Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1314T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.238T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1622T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.431T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1654T>A
  hgvsp: ENSP00000423252.1:p.Phe552Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.431T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1474T>A
  hgvsp: ENSP00000421914.1:p.Phe492Ile
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.734T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1738T>A
  hgvsp: ENSP00000421562.1:p.Phe580Ile
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe906Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

4-89653283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653283
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653283
    reference: chr 4
allele count: 8
allele frequency: 6.591306067297235e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.341G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.235G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1619G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.428G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.731G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1651G>A
  hgvsp: ENSP00000378450.2:p.Asp551Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1651G>A
  hgvsp: ENSP00000423252.1:p.Asp551Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1471G>A
  hgvsp: ENSP00000421914.1:p.Asp491Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1311G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1693G>A
  hgvsp: ENSP00000427189.1:p.Asp565Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2713G>A
  hgvsp: ENSP00000264344.5:p.Asp905Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1735G>A
  hgvsp: ENSP00000421562.1:p.Asp579Asn
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.428G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp905Asn
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum

4-89653300-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653300
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653300
    reference: chr 4
allele count: 5
allele frequency: 4.120720631624058e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1454T>C
  hgvsp: ENSP00000421914.1:p.Met485Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.714T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1718T>C
  hgvsp: ENSP00000421562.1:p.Met573Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1676T>C
  hgvsp: ENSP00000427189.1:p.Met559Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1294T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1634T>C
  hgvsp: ENSP00000423252.1:p.Met545Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1634T>C
  hgvsp: ENSP00000378450.2:p.Met545Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.411T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.411T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.218T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.324T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1602T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2696T>C
  hgvsp: ENSP00000264344.5:p.Met899Thr
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met899Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

4-89653304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653304
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653304
    reference: chr 4
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1450T>C
  hgvsp: ENSP00000421914.1:p.Phe484Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1630T>C
  hgvsp: ENSP00000378450.2:p.Phe544Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1598T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.710T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.320T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2692T>C
  hgvsp: ENSP00000264344.5:p.Phe898Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.407T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1290T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.214T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1630T>C
  hgvsp: ENSP00000423252.1:p.Phe544Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.407T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1672T>C
  hgvsp: ENSP00000427189.1:p.Phe558Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1714T>C
  hgvsp: ENSP00000421562.1:p.Phe572Leu
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe898Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

4-89653317-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653317
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653317
    reference: chr 4
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2679T>C
  hgvsp: ENST00000264344.5:c.2679T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1437T>C
  hgvsp: ENST00000511976.1:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1617T>C
  hgvsp: ENST00000513837.1:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1585T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1277T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.307T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1617T>C
  hgvsp: ENST00000395002.2:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1701T>C
  hgvsp: ENST00000508369.1:c.1701T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.201T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.394T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.697T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1659T>C
  hgvsp: ENST00000503556.1:c.1659T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.394T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn893Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

4-89653317-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653317
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653317
    reference: chr 4
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1701T>A
  hgvsp: ENSP00000421562.1:p.Asn567Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.201T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1585T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.307T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1277T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.697T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1617T>A
  hgvsp: ENSP00000378450.2:p.Asn539Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1617T>A
  hgvsp: ENSP00000423252.1:p.Asn539Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1437T>A
  hgvsp: ENSP00000421914.1:p.Asn479Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1659T>A
  hgvsp: ENSP00000427189.1:p.Asn553Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2679T>A
  hgvsp: ENSP00000264344.5:p.Asn893Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.394T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.394T>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn893Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

4-89653323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653323
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653323
    reference: chr 4
allele count: 5
allele frequency: 4.129160128829796e-5
allele num: 121090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.195T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.301T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1611T>C
  hgvsp: ENST00000395002.2:c.1611T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1695T>C
  hgvsp: ENST00000508369.1:c.1695T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.388T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.388T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1431T>C
  hgvsp: ENST00000511976.1:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1611T>C
  hgvsp: ENST00000513837.1:c.1611T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1271T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1579T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2673T>C
  hgvsp: ENST00000264344.5:c.2673T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1653T>C
  hgvsp: ENST00000503556.1:c.1653T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.691T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp891Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

4-89653326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653326
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653326
    reference: chr 4
allele count: 7
allele frequency: 5.78368999421631e-5
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1268C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.192C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1650C>T
  hgvsp: ENST00000503556.1:c.1650C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.298C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1608C>T
  hgvsp: ENST00000513837.1:c.1608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1576C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2670C>T
  hgvsp: ENST00000264344.5:c.2670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1692C>T
  hgvsp: ENST00000508369.1:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1608C>T
  hgvsp: ENST00000395002.2:c.1608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1428C>T
  hgvsp: ENST00000511976.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.385C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.688C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.385C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17323
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp890Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

4-89653331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653331
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653331
    reference: chr 4
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.380G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1687G>A
  hgvsp: ENSP00000421562.1:p.Glu563Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.683G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1571G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1645G>A
  hgvsp: ENSP00000427189.1:p.Glu549Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2665G>A
  hgvsp: ENSP00000264344.5:p.Glu889Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.380G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1423G>A
  hgvsp: ENSP00000421914.1:p.Glu475Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1603G>A
  hgvsp: ENSP00000378450.2:p.Glu535Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1603G>A
  hgvsp: ENSP00000423252.1:p.Glu535Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.187G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.293G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1263G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu889Lys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-89653336-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653336
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653336
    reference: chr 4
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1566G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.375G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1598G>T
  hgvsp: ENSP00000378450.2:p.Gly533Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1640G>T
  hgvsp: ENSP00000427189.1:p.Gly547Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.678G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1258G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2660G>T
  hgvsp: ENSP00000264344.5:p.Gly887Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1682G>T
  hgvsp: ENSP00000421562.1:p.Gly561Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.375G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1598G>T
  hgvsp: ENSP00000423252.1:p.Gly533Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1418G>T
  hgvsp: ENSP00000421914.1:p.Gly473Val
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.182G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.288G>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly887Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/4-89653337-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653337
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653337
    reference: chr 4
allele count: 2
allele frequency: 1.656616526406467e-5
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1639G>T
  hgvsp: ENSP00000427189.1:p.Gly547Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2659G>T
  hgvsp: ENSP00000264344.5:p.Gly887Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.374G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1681G>T
  hgvsp: ENSP00000421562.1:p.Gly561Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1565G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.374G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.287G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1417G>T
  hgvsp: ENSP00000421914.1:p.Gly473Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.677G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1597G>T
  hgvsp: ENSP00000423252.1:p.Gly533Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1257G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1597G>T
  hgvsp: ENSP00000378450.2:p.Gly533Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.181G>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly887Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-89653341-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653341
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653341
    reference: chr 4
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1635G>C
  hgvsp: ENSP00000427189.1:p.Glu545Asp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1677G>C
  hgvsp: ENSP00000421562.1:p.Glu559Asp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1593G>C
  hgvsp: ENSP00000378450.2:p.Glu531Asp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1593G>C
  hgvsp: ENSP00000423252.1:p.Glu531Asp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.177G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.283G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1413G>C
  hgvsp: ENSP00000421914.1:p.Glu471Asp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2655G>C
  hgvsp: ENSP00000264344.5:p.Glu885Asp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.370G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1253G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1561G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.370G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.673G>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17021
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu885Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

4-89653344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653344
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653344
    reference: chr 4
allele count: 7
allele frequency: 5.811347070250884e-5
allele num: 120454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.280A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1558A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1410A>G
  hgvsp: ENST00000511976.1:c.1410A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2652A>G
  hgvsp: ENST00000264344.5:c.2652A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.367A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.174A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1674A>G
  hgvsp: ENST00000508369.1:c.1674A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1590A>G
  hgvsp: ENST00000513837.1:c.1590A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1590A>G
  hgvsp: ENST00000395002.2:c.1590A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1250A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1632A>G
  hgvsp: ENST00000503556.1:c.1632A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.670A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.367A>G
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16937
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu884Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

4-89653363-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653363
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653363
    reference: chr 4
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.348C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.348C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-14C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/4-89653365-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653365
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653365
    reference: chr 4
allele count: 1
allele frequency: 8.395882659143956e-6
allele num: 119106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.346T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.346T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-16T>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-16T>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

4-89653372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653372
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653372
    reference: chr 4
allele count: 5098
allele frequency: 4.292763434884387e-2
allele num: 118758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.339T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.339T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-23T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-23T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.75e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 1.25e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 4.75e1
  variant carriers: 559
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 9.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 4.25e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 402
genotype depth: GenotypeDepth
  all individuals: 15844
  bin: 2.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 2.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 3.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 5.25e1
  variant carriers: 478
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 191
genotype quality: GenotypeQuality
num of homozygotes: 142
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-89653379-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653379
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653379
    reference: chr 4
allele count: 1
allele frequency: 8.483779014524229e-6
allele num: 117872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.332A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-30A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.332A>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-30A>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

4-89653383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653383
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653383
    reference: chr 4
allele count: 26
allele frequency: 2.213444119049241e-4
allele num: 117464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.328C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.328C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-34C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-89653385-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653385
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653386
    reference: chr 4
allele count: 2
allele frequency: 1.706077046439417e-5
allele num: 117228
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.325dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.325dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-37dupT
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-37dupT
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 12925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

4-89653386-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89653386
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89653386
    reference: chr 4
allele count: 3
allele frequency: 2.561562894907613e-5
allele num: 117116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1245-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1405-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000504229
  gene symbol: FAM13A
  hgvsc: ENST00000504229.1:n.325T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.169-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1669-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1585-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000502811
  gene symbol: FAM13A
  hgvsc: ENST00000502811.1:n.325T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.665-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1627-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1553-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000506433
  gene symbol: FAM13A
  hgvsc: ENST00000506433.1:n.275-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2647-37T>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1585-37T>A
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

4-89658588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658588
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658588
    reference: chr 4
allele count: 13
allele frequency: 1.072235693901453e-4
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1584+35C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2646+35C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1593C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1626+35C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.168+35C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1593C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1404+35C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1593C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.664+35C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1668+35C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

4-89658601-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658601
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658601
    reference: chr 4
allele count: 21
allele frequency: 1.7312733928012e-4
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.664+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1580C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2646+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.168+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1668+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1626+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1404+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1584+22C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1580C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1580C>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

4-89658609-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658609
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658609
    reference: chr 4
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1626+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1668+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1572C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.168+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2646+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.664+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1404+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1584+14C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1572C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1572C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-89658615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658615
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658615
    reference: chr 4
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1566C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2646+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.664+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1668+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1584+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1566C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1626+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.168+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1404+8C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1566C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2646+8C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

4-89658617-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658617
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658617
    reference: chr 4
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.664+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1404+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1626+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1584+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1564G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.168+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1668+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1564G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2646+6G>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1564G>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2646+6G>C
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

4-89658627-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658627
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658627
    reference: chr 4
allele count: 2
allele frequency: 1.648043772042586e-5
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1400T>C
  hgvsp: ENSP00000421914.1:p.Ile467Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1664T>C
  hgvsp: ENSP00000421562.1:p.Ile555Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1554T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.164T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2642T>C
  hgvsp: ENSP00000264344.5:p.Ile881Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1622T>C
  hgvsp: ENSP00000427189.1:p.Ile541Thr
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1554T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1554T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.660T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1580T>C
  hgvsp: ENSP00000423252.1:p.Ile527Thr
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10109
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile881Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

4-89658637-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658637
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658637
    reference: chr 4
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1612T>C
  hgvsp: ENSP00000427189.1:p.Phe538Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.154T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2632T>C
  hgvsp: ENSP00000264344.5:p.Phe878Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1544T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.650T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1544T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1654T>C
  hgvsp: ENSP00000421562.1:p.Phe552Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1570T>C
  hgvsp: ENSP00000423252.1:p.Phe524Leu
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1544T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1390T>C
  hgvsp: ENSP00000421914.1:p.Phe464Leu
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe878Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

4-89658639-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658639
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658639
    reference: chr 4
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1652T>C
  hgvsp: ENSP00000421562.1:p.Phe551Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1388T>C
  hgvsp: ENSP00000421914.1:p.Phe463Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1610T>C
  hgvsp: ENSP00000427189.1:p.Phe537Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.648T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.152T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1568T>C
  hgvsp: ENSP00000423252.1:p.Phe523Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2630T>C
  hgvsp: ENSP00000264344.5:p.Phe877Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1542T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1542T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1542T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe877Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-89658653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658653
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658653
    reference: chr 4
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2616C>T
  hgvsp: ENST00000264344.5:c.2616C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.634C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1596C>T
  hgvsp: ENST00000503556.1:c.1596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.138C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1528C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1374C>T
  hgvsp: ENST00000511976.1:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1554C>T
  hgvsp: ENST00000513837.1:c.1554C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1638C>T
  hgvsp: ENST00000508369.1:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1528C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1528C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly872Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-89658658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658658
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658658
    reference: chr 4
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.629G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1549G>A
  hgvsp: ENSP00000423252.1:p.Glu517Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2611G>A
  hgvsp: ENSP00000264344.5:p.Glu871Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.133G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1369G>A
  hgvsp: ENSP00000421914.1:p.Glu457Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1633G>A
  hgvsp: ENSP00000421562.1:p.Glu545Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1523G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1523G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1591G>A
  hgvsp: ENSP00000427189.1:p.Glu531Lys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1523G>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu871Lys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-89658688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658688
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658688
    reference: chr 4
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.103C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1603C>T
  hgvsp: ENSP00000421562.1:p.Arg535Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2581C>T
  hgvsp: ENSP00000264344.5:p.Arg861Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1493C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1493C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1561C>T
  hgvsp: ENSP00000427189.1:p.Arg521Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1519C>T
  hgvsp: ENSP00000423252.1:p.Arg507Trp
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.599C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1493C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1339C>T
  hgvsp: ENSP00000421914.1:p.Arg447Trp
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg861Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

4-89658698-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658698
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658698
    reference: chr 4
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1551C>G
  hgvsp: ENST00000503556.1:c.1551C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1593C>G
  hgvsp: ENST00000508369.1:c.1593C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1483C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1509C>G
  hgvsp: ENST00000513837.1:c.1509C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1329C>G
  hgvsp: ENST00000511976.1:c.1329C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2571C>G
  hgvsp: ENST00000264344.5:c.2571C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.93C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1483C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1483C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.589C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro857Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/4-89658706-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658706
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658706
    reference: chr 4
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1475G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1475G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585G>T
  hgvsp: ENSP00000421562.1:p.Gly529Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543G>T
  hgvsp: ENSP00000427189.1:p.Gly515Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563G>T
  hgvsp: ENSP00000264344.5:p.Gly855Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1475G>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321G>T
  hgvsp: ENSP00000421914.1:p.Gly441Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501G>T
  hgvsp: ENSP00000423252.1:p.Gly501Cys
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.85G>T
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly855Cys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

4-89658706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658706
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658706
    reference: chr 4
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1475G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501G>A
  hgvsp: ENSP00000423252.1:p.Gly501Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1475G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585G>A
  hgvsp: ENSP00000421562.1:p.Gly529Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543G>A
  hgvsp: ENSP00000427189.1:p.Gly515Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1475G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563G>A
  hgvsp: ENSP00000264344.5:p.Gly855Ser
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.85G>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321G>A
  hgvsp: ENSP00000421914.1:p.Gly441Ser
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly855Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

4-89658709-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658709
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658709
    reference: chr 4
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543-3C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581-3C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563-3C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321-3C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501-3C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1472C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585-3C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.82C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1472C>A
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1472C>A
  variant of: http://identifiers.org/hgnc/19367
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10066
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2563-3C>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-89658728-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658728
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658728
    reference: chr 4
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585-22T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321-22T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543-22T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1453T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501-22T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.63T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581-22T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1453T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1453T>C
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563-22T>C
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

4-89658729-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658729
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658729
    reference: chr 4
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543-23C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585-23C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1452C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1452C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.62C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501-23C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321-23C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1452C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581-23C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563-23C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

4-89658740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658740
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658740
    reference: chr 4
allele count: 3
allele frequency: 2.481512730160306e-5
allele num: 120894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.51C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1441C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501-34C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543-34C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321-34C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581-34C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585-34C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563-34C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1441C>T
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1441C>T
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

4-89658740-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89658740
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 89658740
    reference: chr 4
allele count: 2
allele frequency: 1.654341820106871e-5
allele num: 120894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421914
  ensembl transcript: ENST00000511976
  gene symbol: FAM13A
  hgvsc: ENST00000511976.1:c.1321-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000264344
  ensembl transcript: ENST00000264344
  gene symbol: FAM13A
  hgvsc: ENST00000264344.5:c.2563-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511573
  gene symbol: FAM13A
  hgvsc: ENST00000511573.1:n.1552+1441C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427077
  ensembl transcript: ENST00000504836
  gene symbol: FAM13A
  hgvsc: ENST00000504836.1:c.*1244+1441C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000423252
  ensembl transcript: ENST00000513837
  gene symbol: FAM13A
  hgvsc: ENST00000513837.1:c.1501-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000378450
  ensembl transcript: ENST00000395002
  gene symbol: FAM13A
  hgvsc: ENST00000395002.2:c.1584+1441C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000421562
  ensembl transcript: ENST00000508369
  gene symbol: FAM13A
  hgvsc: ENST00000508369.1:c.1585-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000508360
  gene symbol: FAM13A
  hgvsc: ENST00000508360.1:n.581-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138640
  ensembl protein: ENSP00000427189
  ensembl transcript: ENST00000503556
  gene symbol: FAM13A
  hgvsc: ENST00000503556.1:c.1543-34C>G
  variant of: http://identifiers.org/hgnc/19367
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138640
  ensembl transcript: ENST00000511623
  gene symbol: FAM13A
  hgvsc: ENST00000511623.1:n.51C>G
  variant of: http://identifiers.org/hgnc/19367
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16087
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4025
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8378
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3231
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663893510815308e-5
allele num: 60100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.046e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 1.105612e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 305
bin: 7.25e1
variant carriers: 48

GenotypeDepth
all individuals: 1299
bin: 4.75e1
variant carriers: 231

GenotypeDepth
all individuals: 2063
bin: 4.25e1
variant carriers: 341

GenotypeQuality
all individuals: 1229
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 14146
bin: 9.75e1
variant carriers: 6596

GenotypeQuality
all individuals: 3052
bin: 5.25e1
variant carriers: 38

GenotypeQuality
all individuals: 360
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 650
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 2415
bin: 8.25e1
variant carriers: 71

GenotypeQuality
all individuals: 991
bin: 5.75e1
variant carriers: 43

GenotypeQuality
all individuals: 602
bin: 1.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2915
bin: 4.75e1
variant carriers: 21

GenotypeQuality
all individuals: 11355
bin: 6.25e1
variant carriers: 33

GenotypeQuality
all individuals: 2393
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 2054
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 5239
bin: 6.75e1
variant carriers: 36

GenotypeQuality
all individuals: 2452
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1105
bin: 8.75e1
variant carriers: 68

GenotypeQuality
all individuals: 1526
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1262
bin: 2.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2227
bin: 7.25e1
variant carriers: 37

GenotypeQuality
all individuals: 1539
bin: 9.25e1
variant carriers: 58

GenotypeQuality
all individuals: 3156
bin: 7.75e1
variant carriers: 44

South Asian
type: Population
allele count: 420
allele frequency: 3.987089424719954e-2
allele num: 10534
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 745
allele frequency: 1.140888208269525e-1
allele num: 6530
num of homozygotes: 57

Other
type: Population
allele count: 47
allele frequency: 5.875e-2
allele num: 800
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 4766
allele frequency: 7.544004052171711e-2
allele num: 63176
num of homozygotes: 186

African
type: Population
allele count: 902
allele frequency: 8.975124378109453e-2
allele num: 10050
num of homozygotes: 33

East Asian
type: Population
allele count: 2
allele frequency: 2.401536983669548e-4
allele num: 8328
num of homozygotes: 0

Latino
type: Population
allele count: 226
allele frequency: 1.99189141547682e-2
allele num: 11346
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.569e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.733e0

DP
type: SiteQuality
SIO_000300: 1.646398e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeDepth
all individuals: 545
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8726
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3611
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 18
allele frequency: 1.784651992861392e-3
allele num: 10086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.362204724409449e-4
allele num: 63500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 2.020734493059216e-3
allele num: 11382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.252e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.657633e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

QD
type: SiteQuality
SIO_000300: 1.691e1

GenotypeDepth
all individuals: 138
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24455
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.115847198853368e-5
allele num: 64188
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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SIO_000300: 4.698e0

DP
type: SiteQuality
SIO_000300: 1.73123e6

VQSLOD
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SIO_000300: -1.122e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64188
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.984725965858041e-5
allele num: 11130
num of homozygotes: 0

DP
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SIO_000300: 1.73123e6

BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 3.6e-3

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27125
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533319022355791e-5
allele num: 65218
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.165e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -4.0e-4

MQRankSum
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QD
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MQ
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SIO_000300: 6.058e1

VQSLOD
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ClippingRankSum
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SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 1.784487e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8826
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.360518180479906e-5
allele num: 13586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.792885e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.388e0

QD
type: SiteQuality
SIO_000300: 1.112e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.56e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65938
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.758061401815022e-4
allele num: 10358
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 1.28e-1

VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.309e1

MQRankSum
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MQ
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SIO_000300: 5.919e1

DP
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BaseQRankSum
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SIO_000300: -2.85e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515886490419597e-5
allele num: 65968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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South Asian
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allele frequency: 6.764984440535787e-5
allele num: 14782
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

FS
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DP
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.93e-1

MQ
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeDepth
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variant carriers: 13

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
type: Population
allele count: 3
allele frequency: 2.894635275955229e-4
allele num: 10364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8622
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Latino
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South Asian
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allele count: 142
allele frequency: 9.554568698694657e-3
allele num: 14862
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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Other
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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Latino
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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Other
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Latino
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South Asian
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MQ
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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FS
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MQRankSum
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QD
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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African
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South Asian
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FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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ClippingRankSum
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ReadPosRankSum
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DP
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SIO_000300: 1.849331e6

MQ
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SIO_000300: 5.962e1

MQRankSum
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SIO_000300: 9.0e-2

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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African
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BaseQRankSum
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SIO_000300: -7.89e-1

MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66706
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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East Asian
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allele num: 8646
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South Asian
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allele num: 16508
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Other
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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SIO_000300: 5.649999999999999e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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FS
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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Other
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MQRankSum
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ClippingRankSum
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DP
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MQ
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FS
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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Other
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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MQ
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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African
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allele num: 10406
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European (Non-Finnish)
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allele count: 36
allele frequency: 5.39568345323741e-4
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.240882103477523e-4
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.866954e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

QD
type: SiteQuality
SIO_000300: 1.42e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeDepth
all individuals: 244
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 216
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variant carriers: 0

GenotypeDepth
all individuals: 722
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variant carriers: 1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 2.808e1

DP
type: SiteQuality
SIO_000300: 1.854477e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8926
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1887
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.854779e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.26e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

GenotypeDepth
all individuals: 1696
bin: 7.75e1
variant carriers: 1544

GenotypeDepth
all individuals: 1597
bin: 8.75e1
variant carriers: 1531

GenotypeDepth
all individuals: 1367
bin: 4.25e1
variant carriers: 204

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
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variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 7
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variant carriers: 1

GenotypeQuality
all individuals: 23943
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variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1917
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variant carriers: 5

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 879
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variant carriers: 2

GenotypeQuality
all individuals: 2492
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variant carriers: 4

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 2

GenotypeQuality
all individuals: 1605
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variant carriers: 5

GenotypeQuality
all individuals: 8
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variant carriers: 2

GenotypeQuality
all individuals: 8
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variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
all individuals: 5356
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variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 2

GenotypeQuality
all individuals: 23753
bin: 9.75e1
variant carriers: 19254

European (Non-Finnish)
type: Population
allele count: 9894
allele frequency: 1.4828247706972e-1
allele num: 66724
num of homozygotes: 767

Latino
type: Population
allele count: 2853
allele frequency: 2.466286307053942e-1
allele num: 11568
num of homozygotes: 373

European (Finnish)
type: Population
allele count: 1334
allele frequency: 2.017543859649123e-1
allele num: 6612
num of homozygotes: 148

Other
type: Population
allele count: 164
allele frequency: 1.806167400881057e-1
allele num: 908
num of homozygotes: 11

East Asian
type: Population
allele count: 1873
allele frequency: 2.169330553625203e-1
allele num: 8634
num of homozygotes: 212

South Asian
type: Population
allele count: 3153
allele frequency: 1.910214467466376e-1
allele num: 16506
num of homozygotes: 322

African
type: Population
allele count: 2044
allele frequency: 1.964628988850442e-1
allele num: 10404
num of homozygotes: 194

BaseQRankSum
type: SiteQuality
SIO_000300: -3.045e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.56e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

DP
type: SiteQuality
SIO_000300: 3.065119e6

VQSLOD
type: SiteQuality
SIO_000300: 6.93e0

GenotypeDepth
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 958
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variant carriers: 0

GenotypeDepth
all individuals: 614
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GenotypeDepth
all individuals: 153
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variant carriers: 0

GenotypeDepth
all individuals: 1044
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 30742
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variant carriers: 0

GenotypeQuality
all individuals: 7844
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variant carriers: 0

GenotypeQuality
all individuals: 2686
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 2801
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 1652
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GenotypeQuality
all individuals: 9781
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.001927e6

QD
type: SiteQuality
SIO_000300: 1.203e1

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeDepth
all individuals: 614
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 958
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 7846
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1652
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9780
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.038e0

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.001861e6

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.029201502483945e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -8.29e-1

InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

VQSLOD
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 4.96e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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FS
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DP
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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DP
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BaseQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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VQSLOD
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FS
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QD
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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European (Non-Finnish)
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East Asian
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South Asian
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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MQRankSum
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MQ
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ClippingRankSum
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SIO_000300: -4.29e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 1.276e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e0

DP
type: SiteQuality
SIO_000300: 1.985941e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.985783e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.661e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.714e0

FS
type: SiteQuality
SIO_000300: 1.252e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeDepth
all individuals: 10370
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variant carriers: 0

GenotypeDepth
all individuals: 610
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variant carriers: 0

GenotypeDepth
all individuals: 156
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1839
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GenotypeQuality
all individuals: 2735
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3844
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.263309532757109e-5
allele num: 15966
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.962e1

VQSLOD
type: SiteQuality
SIO_000300: -2.829e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 1.981566e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.856e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 610
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10335
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variant carriers: 0

GenotypeDepth
all individuals: 2661
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1041
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variant carriers: 0

GenotypeDepth
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7547
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1202
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variant carriers: 0

GenotypeQuality
all individuals: 9767
bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.405286343612335e-4
allele num: 15890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 1.97885e6

GenotypeDepth
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10134
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variant carriers: 0

GenotypeDepth
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 539
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
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variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 2202
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variant carriers: 0

GenotypeQuality
all individuals: 3799
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
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variant carriers: 0

GenotypeQuality
all individuals: 9755
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variant carriers: 1

GenotypeQuality
all individuals: 27508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7316
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.599788806758183e-5
allele num: 15152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.798e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 3.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.951346e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -6.956e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.404e1

GenotypeDepth
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.25e1
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GenotypeQuality
all individuals: 2682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 7258
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GenotypeQuality
all individuals: 1641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
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GenotypeQuality
all individuals: 1194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
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variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.943926e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.438e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

QD
type: SiteQuality
SIO_000300: 1.622e1

GenotypeDepth
all individuals: 149
bin: 8.75e1
variant carriers: 46

GenotypeDepth
all individuals: 731
bin: 6.25e1
variant carriers: 261

GenotypeDepth
all individuals: 158
bin: 9.25e1
variant carriers: 43

GenotypeQuality
all individuals: 2566
bin: 7.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2425
bin: 8.25e1
variant carriers: 19

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1420
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 674
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11586
bin: 9.75e1
variant carriers: 4864

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 116
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variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 26209
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2650
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 3602
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 541
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7000
bin: 6.75e1
variant carriers: 12

Other
type: Population
allele count: 54
allele frequency: 6.206896551724138e-2
allele num: 870
num of homozygotes: 1

Latino
type: Population
allele count: 236
allele frequency: 2.052173913043478e-2
allele num: 11500
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 2390
allele frequency: 3.620663535827905e-2
allele num: 66010
num of homozygotes: 38

European (Finnish)
type: Population
allele count: 212
allele frequency: 3.211148136928203e-2
allele num: 6602
num of homozygotes: 1

East Asian
type: Population
allele count: 265
allele frequency: 3.087858308086693e-2
allele num: 8582
num of homozygotes: 4

African
type: Population
allele count: 437
allele frequency: 4.218961189418807e-2
allele num: 10358
num of homozygotes: 8

South Asian
type: Population
allele count: 1504
allele frequency: 1.013750337018064e-1
allele num: 14836
num of homozygotes: 86

DP
type: SiteQuality
SIO_000300: 1.928113e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.553e1

GenotypeDepth
all individuals: 670
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 766
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7348
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26076
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3885
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.040270346381301e-5
allele num: 14204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

FS
type: SiteQuality
SIO_000300: 3.547e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.820996e6

QD
type: SiteQuality
SIO_000300: 1.58e1

GenotypeDepth
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 15683
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
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variant carriers: 0

GenotypeQuality
all individuals: 7368
bin: 9.75e1
variant carriers: 25

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 1305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.864333859171089e-3
allele num: 13946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.549e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.801524e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeDepth
all individuals: 2379
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 766
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15512
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 511
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variant carriers: 0

GenotypeQuality
all individuals: 7049
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variant carriers: 0

GenotypeQuality
all individuals: 2717
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variant carriers: 0

GenotypeQuality
all individuals: 7343
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variant carriers: 2

GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 1150
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variant carriers: 0

GenotypeQuality
all individuals: 2600
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variant carriers: 0

GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
all individuals: 352
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GenotypeQuality
all individuals: 1157
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variant carriers: 0

GenotypeQuality
all individuals: 3819
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variant carriers: 0

GenotypeQuality
all individuals: 3690
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variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 469
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GenotypeQuality
all individuals: 24072
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variant carriers: 0

GenotypeQuality
all individuals: 1868
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variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.256894049346879e-5
allele num: 13780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523832744118006e-5
allele num: 65624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.388e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.131e0

DP
type: SiteQuality
SIO_000300: 1.796323e6

MQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

QD
type: SiteQuality
SIO_000300: 2.637e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

GenotypeDepth
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2383
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4328
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variant carriers: 0

GenotypeQuality
all individuals: 6977
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variant carriers: 0

GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 2697
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GenotypeQuality
all individuals: 23426
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GenotypeQuality
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GenotypeQuality
all individuals: 3693
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GenotypeQuality
all individuals: 1552
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variant carriers: 0

GenotypeQuality
all individuals: 7341
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variant carriers: 2

GenotypeQuality
all individuals: 1155
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variant carriers: 1

GenotypeQuality
all individuals: 612
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variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.573031310021036e-5
allele num: 65602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.983e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.789961e6

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

FS
type: SiteQuality
SIO_000300: 6.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 9.24e0

GenotypeQuality
all individuals: 2322
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variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 1667
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GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
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GenotypeQuality
all individuals: 10053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5113
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GenotypeQuality
all individuals: 22156
bin: 6.25e1
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GenotypeQuality
all individuals: 11151
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 3735
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variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.503237742830712e-3
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 2.082154e6

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 2.99895036737142e-4
allele num: 66690
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 6.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

DP
type: SiteQuality
SIO_000300: 2.085432e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 3747
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.264e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.908e0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

DP
type: SiteQuality
SIO_000300: 2.085547e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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ClippingRankSum
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SIO_000300: -1.23e-1

QD
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.997781641585227e-5
allele num: 66716
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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DP
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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South Asian
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African
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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DP
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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Latino
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allele num: 11552
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European (Finnish)
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East Asian
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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Other
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African
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DP
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66678
num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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BaseQRankSum
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QD
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MQ
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
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DP
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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African
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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East Asian
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South Asian
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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