3-155212224-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212224
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212224
    reference: chr 3
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1941T>C
  hgvsp: ENST00000494598.1:c.1941T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.291T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1941T>C
  hgvsp: ENST00000447496.2:c.1941T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1887T>C
  hgvsp: ENST00000414191.1:c.1887T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1887T>C
  hgvsp: ENST00000334686.6:c.1887T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1941T>C
  hgvsp: ENST00000340059.7:c.1941T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1887T>C
  hgvsp: ENST00000460012.1:c.1887T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr647Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-155212233-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212233
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212233
    reference: chr 3
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1878C>A
  hgvsp: ENSP00000412977.1:p.Phe626Leu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1932C>A
  hgvsp: ENSP00000345988.7:p.Phe644Leu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1878C>A
  hgvsp: ENSP00000417502.1:p.Phe626Leu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.282C>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1878C>A
  hgvsp: ENSP00000335469.6:p.Phe626Leu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1932C>A
  hgvsp: ENSP00000402759.2:p.Phe644Leu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1932C>A
  hgvsp: ENSP00000419100.1:p.Phe644Leu
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40076
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe644Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

3-155212236-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212236
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212236
    reference: chr 3
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1929G>C
  hgvsp: ENSP00000402759.2:p.Gln643His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1875G>C
  hgvsp: ENSP00000412977.1:p.Gln625His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1929G>C
  hgvsp: ENSP00000345988.7:p.Gln643His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1875G>C
  hgvsp: ENSP00000417502.1:p.Gln625His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1929G>C
  hgvsp: ENSP00000419100.1:p.Gln643His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.279G>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1875G>C
  hgvsp: ENSP00000335469.6:p.Gln625His
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln643His
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

3-155212245-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212245
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212245
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1866A>C
  hgvsp: ENSP00000335469.6:p.Lys622Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1920A>C
  hgvsp: ENSP00000345988.7:p.Lys640Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1866A>C
  hgvsp: ENSP00000412977.1:p.Lys622Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.270A>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1920A>C
  hgvsp: ENSP00000402759.2:p.Lys640Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1866A>C
  hgvsp: ENSP00000417502.1:p.Lys622Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1920A>C
  hgvsp: ENSP00000419100.1:p.Lys640Asn
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys640Asn
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

3-155212252-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212252
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212252
    reference: chr 3
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1859A>G
  hgvsp: ENSP00000412977.1:p.Gln620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1913A>G
  hgvsp: ENSP00000419100.1:p.Gln638Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1913A>G
  hgvsp: ENSP00000345988.7:p.Gln638Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1913A>G
  hgvsp: ENSP00000402759.2:p.Gln638Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1859A>G
  hgvsp: ENSP00000417502.1:p.Gln620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1859A>G
  hgvsp: ENSP00000335469.6:p.Gln620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.263A>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln638Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-155212270-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212270
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212270
    reference: chr 3
allele count: 4
allele frequency: 3.296848213108268e-5
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1841G>C
  hgvsp: ENSP00000417502.1:p.Arg614Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1841G>C
  hgvsp: ENSP00000335469.6:p.Arg614Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.245G>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1895G>C
  hgvsp: ENSP00000402759.2:p.Arg632Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1895G>C
  hgvsp: ENSP00000419100.1:p.Arg632Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1895G>C
  hgvsp: ENSP00000345988.7:p.Arg632Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1841G>C
  hgvsp: ENSP00000412977.1:p.Arg614Thr
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg632Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-155212286-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212286
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212286
    reference: chr 3
allele count: 30
allele frequency: 2.472880741204788e-4
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1879T>A
  hgvsp: ENSP00000402759.2:p.Ser627Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.229T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1879T>A
  hgvsp: ENSP00000419100.1:p.Ser627Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1879T>A
  hgvsp: ENSP00000345988.7:p.Ser627Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1825T>A
  hgvsp: ENSP00000412977.1:p.Ser609Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1825T>A
  hgvsp: ENSP00000335469.6:p.Ser609Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1825T>A
  hgvsp: ENSP00000417502.1:p.Ser609Thr
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser627Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

3-155212294-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212294
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212294
    reference: chr 3
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1871A>G
  hgvsp: ENSP00000345988.7:p.Asn624Ser
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1817A>G
  hgvsp: ENSP00000412977.1:p.Asn606Ser
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1817A>G
  hgvsp: ENSP00000417502.1:p.Asn606Ser
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1871A>G
  hgvsp: ENSP00000419100.1:p.Asn624Ser
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1871A>G
  hgvsp: ENSP00000402759.2:p.Asn624Ser
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1817A>G
  hgvsp: ENSP00000335469.6:p.Asn606Ser
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.221A>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn624Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-155212296-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212296
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212296
    reference: chr 3
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1869A>G
  hgvsp: ENST00000447496.2:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1869A>G
  hgvsp: ENST00000340059.7:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1815A>G
  hgvsp: ENST00000414191.1:c.1815A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1869A>G
  hgvsp: ENST00000494598.1:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.219A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1815A>G
  hgvsp: ENST00000334686.6:c.1815A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1815A>G
  hgvsp: ENST00000460012.1:c.1815A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9736
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly623Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-155212301-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212301
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212301
    reference: chr 3
allele count: 8
allele frequency: 6.608839322593969e-5
allele num: 121050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1810A>G
  hgvsp: ENSP00000417502.1:p.Thr604Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1810A>G
  hgvsp: ENSP00000412977.1:p.Thr604Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1810A>G
  hgvsp: ENSP00000335469.6:p.Thr604Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.214A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1864A>G
  hgvsp: ENSP00000345988.7:p.Thr622Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1864A>G
  hgvsp: ENSP00000402759.2:p.Thr622Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1864A>G
  hgvsp: ENSP00000419100.1:p.Thr622Ala
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr622Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-155212309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212309
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212309
    reference: chr 3
allele count: 87
allele frequency: 7.246618244819085e-4
allele num: 120056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-3C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-3C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-3C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-3C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-3C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-3C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-3C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11271
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1859-3C>T
num of homozygotes: 2
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-155212311-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212311
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212311
    reference: chr 3
allele count: 1
allele frequency: 8.368621018628551e-6
allele num: 119494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-5G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-5G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-5G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-5G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-5G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-5G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-5G>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1859-5G>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-155212313-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212313
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212312
    reference: chr 3
allele count: 4
allele frequency: 3.408722921957289e-5
allele num: 117346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-8delA
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-8delA
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-8delA
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-8delA
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-8delA
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-8delA
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-8delA
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1859-8delA
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: GT
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-155212316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212316
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212316
    reference: chr 3
allele count: 1
allele frequency: 8.722958827634334e-6
allele num: 114640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-10A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-10A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-10A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-10A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-10A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-10A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-10A>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

3-155212322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212322
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212322
    reference: chr 3
allele count: 19
allele frequency: 4.937116723833281e-4
allele num: 38484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-16G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-16G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-16G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-16G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-16G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-16G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-16G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-155212322-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212322
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212321
    reference: chr 3
allele count: 1
allele frequency: 2.598482486228043e-5
allele num: 38484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-17delC
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-17delC
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-17delC
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-17delC
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-17delC
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-17delC
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-17delC
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CG
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-155212323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212323
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212323
    reference: chr 3
allele count: 1
allele frequency: 2.677232812165346e-5
allele num: 37352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-17C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-17C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-17C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-17C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-17C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-17C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-17C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

3-155212325-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212325
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212326
    reference: chr 3
allele count: 99160
allele frequency: 8.247525575979373e-1
allele num: 120230
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-20dupT
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-20dupT
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-20dupT
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-20dupT
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-20dupT
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-20dupT
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-20dupT
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 4.75e1
  variant carriers: 7077
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 4.25e1
  variant carriers: 6853
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 1022
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.25e1
  variant carriers: 4203
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 2.25e1
  variant carriers: 2517
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 9.75e1
  variant carriers: 3886
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 6.75e1
  variant carriers: 2428
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 5.75e1
  variant carriers: 4992
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 3.75e1
  variant carriers: 5836
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 2.75e1
  variant carriers: 3151
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 5.25e1
  variant carriers: 6240
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 375
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 749
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.75e1
  variant carriers: 1081
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 9.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 1608
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 6.25e1
  variant carriers: 3658
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.75e1
  variant carriers: 1775
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 8.75e1
  variant carriers: 555
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 776
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 5.25e1
  variant carriers: 545
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 634
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.75e1
  variant carriers: 1030
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 898
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 401
num of homozygotes: 41156
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

3-155212326-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212326
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212326
    reference: chr 3
allele count: 1
allele frequency: 2.367424242424242e-4
allele num: 4224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-20T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-20T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-20T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-20T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-20T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-20T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-20T>C
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13610
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

3-155212332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212332
    reference: chr 3
allele count: 1
allele frequency: 8.584427847883938e-6
allele num: 116490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-26C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-26C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-26C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-26C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-26C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-26C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-26C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-155212333-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212333
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212333
    reference: chr 3
allele count: 1
allele frequency: 8.421903687109433e-6
allele num: 118738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-27C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-27C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-27C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-27C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-27C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-27C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-27C>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-155212337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212337
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212337
    reference: chr 3
allele count: 2
allele frequency: 1.687934643170616e-5
allele num: 118488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-31A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-31A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-31A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-31A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-31A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-31A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-31A>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-155212340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212340
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212340
    reference: chr 3
allele count: 53
allele frequency: 4.481802191854959e-4
allele num: 118256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-34C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-155212348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155212348
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155212348
    reference: chr 3
allele count: 4
allele frequency: 3.396508389375722e-5
allele num: 117768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1859-42C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1805-42C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1859-42C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1805-42C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1805-42C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1859-42C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.209-42C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-155215058-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215058
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215058
    reference: chr 3
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804+51T>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858+51T>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804+51T>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208+51T>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858+51T>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858+51T>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804+51T>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26573
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-155215058-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215058
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215058
    reference: chr 3
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208+51T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858+51T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804+51T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858+51T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804+51T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858+51T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804+51T>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-155215064-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215064
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215064
    reference: chr 3
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804+45T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858+45T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804+45T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858+45T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208+45T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804+45T>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858+45T>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-155215084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215084
    reference: chr 3
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858+25C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858+25C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858+25C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804+25C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804+25C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208+25C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804+25C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26582
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-155215095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215095
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215095
    reference: chr 3
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208+14G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858+14G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858+14G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804+14G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858+14G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804+14G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804+14G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-155215104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215104
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215104
    reference: chr 3
allele count: 3
allele frequency: 2.475737769855417e-5
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804+5G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858+5G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208+5G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858+5G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858+5G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804+5G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804+5G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1858+5G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

3-155215109-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215109
    reference: chr 3
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208G>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804G>C
  hgvsp: ENSP00000412977.1:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858G>C
  hgvsp: ENSP00000402759.2:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804G>C
  hgvsp: ENSP00000417502.1:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858G>C
  hgvsp: ENSP00000419100.1:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858G>C
  hgvsp: ENSP00000345988.7:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804G>C
  hgvsp: ENSP00000335469.6:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26581
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11761
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly620Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-155215109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215109
    reference: chr 3
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1858G>A
  hgvsp: ENSP00000419100.1:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1858G>A
  hgvsp: ENSP00000345988.7:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1804G>A
  hgvsp: ENSP00000335469.6:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1804G>A
  hgvsp: ENSP00000417502.1:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1804G>A
  hgvsp: ENSP00000412977.1:p.Gly602Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1858G>A
  hgvsp: ENSP00000402759.2:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.208G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly620Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-155215110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215110
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215110
    reference: chr 3
allele count: 6
allele frequency: 4.948453608247422e-5
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1857C>T
  hgvsp: ENST00000340059.7:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1857C>T
  hgvsp: ENST00000447496.2:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1803C>T
  hgvsp: ENST00000334686.6:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.207C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1803C>T
  hgvsp: ENST00000460012.1:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1857C>T
  hgvsp: ENST00000494598.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1803C>T
  hgvsp: ENST00000414191.1:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1857C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-155215110-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215110
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215110
    reference: chr 3
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1857C>G
  hgvsp: ENSP00000345988.7:p.Asp619Glu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1803C>G
  hgvsp: ENSP00000335469.6:p.Asp601Glu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1803C>G
  hgvsp: ENSP00000412977.1:p.Asp601Glu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.207C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1857C>G
  hgvsp: ENSP00000402759.2:p.Asp619Glu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1857C>G
  hgvsp: ENSP00000419100.1:p.Asp619Glu
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1803C>G
  hgvsp: ENSP00000417502.1:p.Asp601Glu
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp619Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

3-155215116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215116
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215116
    reference: chr 3
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.201G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1797G>A
  hgvsp: ENST00000414191.1:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1797G>A
  hgvsp: ENST00000334686.6:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1851G>A
  hgvsp: ENST00000340059.7:c.1851G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1851G>A
  hgvsp: ENST00000494598.1:c.1851G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1797G>A
  hgvsp: ENST00000460012.1:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1851G>A
  hgvsp: ENST00000447496.2:c.1851G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val617Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

3-155215118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215118
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215118
    reference: chr 3
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1795G>A
  hgvsp: ENSP00000335469.6:p.Val599Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1795G>A
  hgvsp: ENSP00000412977.1:p.Val599Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1849G>A
  hgvsp: ENSP00000419100.1:p.Val617Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1849G>A
  hgvsp: ENSP00000345988.7:p.Val617Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1795G>A
  hgvsp: ENSP00000417502.1:p.Val599Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.199G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1849G>A
  hgvsp: ENSP00000402759.2:p.Val617Met
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val617Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-155215119-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215119
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215119
    reference: chr 3
allele count: 4
allele frequency: 3.29777235477435e-5
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1794T>C
  hgvsp: ENST00000460012.1:c.1794T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1848T>C
  hgvsp: ENST00000447496.2:c.1848T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1794T>C
  hgvsp: ENST00000334686.6:c.1794T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.198T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1848T>C
  hgvsp: ENST00000494598.1:c.1848T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1848T>C
  hgvsp: ENST00000340059.7:c.1848T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1794T>C
  hgvsp: ENST00000414191.1:c.1794T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26579
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile616Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-155215130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215130
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215130
    reference: chr 3
allele count: 4
allele frequency: 3.296848213108268e-5
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1837G>A
  hgvsp: ENSP00000345988.7:p.Ala613Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1837G>A
  hgvsp: ENSP00000402759.2:p.Ala613Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.187G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1783G>A
  hgvsp: ENSP00000335469.6:p.Ala595Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1783G>A
  hgvsp: ENSP00000412977.1:p.Ala595Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1837G>A
  hgvsp: ENSP00000419100.1:p.Ala613Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1783G>A
  hgvsp: ENSP00000417502.1:p.Ala595Thr
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26580
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala613Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-155215132-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215132
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215132
    reference: chr 3
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1781C>A
  hgvsp: ENSP00000417502.1:p.Ala594Asp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1835C>A
  hgvsp: ENSP00000402759.2:p.Ala612Asp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1835C>A
  hgvsp: ENSP00000419100.1:p.Ala612Asp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1835C>A
  hgvsp: ENSP00000345988.7:p.Ala612Asp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.185C>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1781C>A
  hgvsp: ENSP00000412977.1:p.Ala594Asp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1781C>A
  hgvsp: ENSP00000335469.6:p.Ala594Asp
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala612Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-155215133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215133
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215133
    reference: chr 3
allele count: 3
allele frequency: 2.47239162683369e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1780G>A
  hgvsp: ENSP00000417502.1:p.Ala594Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1834G>A
  hgvsp: ENSP00000402759.2:p.Ala612Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1780G>A
  hgvsp: ENSP00000335469.6:p.Ala594Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.184G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1834G>A
  hgvsp: ENSP00000345988.7:p.Ala612Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1834G>A
  hgvsp: ENSP00000419100.1:p.Ala612Thr
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1780G>A
  hgvsp: ENSP00000412977.1:p.Ala594Thr
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26578
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala612Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

3-155215136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215136
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215136
    reference: chr 3
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1777G>A
  hgvsp: ENSP00000412977.1:p.Val593Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.181G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1831G>A
  hgvsp: ENSP00000419100.1:p.Val611Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1831G>A
  hgvsp: ENSP00000345988.7:p.Val611Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1831G>A
  hgvsp: ENSP00000402759.2:p.Val611Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1777G>A
  hgvsp: ENSP00000417502.1:p.Val593Met
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1777G>A
  hgvsp: ENSP00000335469.6:p.Val593Met
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val611Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

3-155215137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215137
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215137
    reference: chr 3
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1830C>T
  hgvsp: ENST00000447496.2:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1776C>T
  hgvsp: ENST00000414191.1:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1830C>T
  hgvsp: ENST00000494598.1:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.180C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1776C>T
  hgvsp: ENST00000334686.6:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1830C>T
  hgvsp: ENST00000340059.7:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1776C>T
  hgvsp: ENST00000460012.1:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser610Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

3-155215161-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215161
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215161
    reference: chr 3
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1752T>C
  hgvsp: ENST00000460012.1:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1752T>C
  hgvsp: ENST00000334686.6:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1752T>C
  hgvsp: ENST00000414191.1:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1806T>C
  hgvsp: ENST00000494598.1:c.1806T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1806T>C
  hgvsp: ENST00000340059.7:c.1806T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.156T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1806T>C
  hgvsp: ENST00000447496.2:c.1806T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser602Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-155215167-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215167
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215167
    reference: chr 3
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1746A>G
  hgvsp: ENST00000414191.1:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1800A>G
  hgvsp: ENST00000447496.2:c.1800A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1800A>G
  hgvsp: ENST00000494598.1:c.1800A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1800A>G
  hgvsp: ENST00000340059.7:c.1800A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1746A>G
  hgvsp: ENST00000460012.1:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.150A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1746A>G
  hgvsp: ENST00000334686.6:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11936
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu600Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

3-155215169-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215169
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215169
    reference: chr 3
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1798G>C
  hgvsp: ENSP00000345988.7:p.Glu600Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1744G>C
  hgvsp: ENSP00000412977.1:p.Glu582Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1744G>C
  hgvsp: ENSP00000417502.1:p.Glu582Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1744G>C
  hgvsp: ENSP00000335469.6:p.Glu582Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.148G>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1798G>C
  hgvsp: ENSP00000419100.1:p.Glu600Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1798G>C
  hgvsp: ENSP00000402759.2:p.Glu600Gln
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11922
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu600Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-155215173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215173
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215173
    reference: chr 3
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1740C>T
  hgvsp: ENST00000334686.6:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1794C>T
  hgvsp: ENST00000494598.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1794C>T
  hgvsp: ENST00000340059.7:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1794C>T
  hgvsp: ENST00000447496.2:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1740C>T
  hgvsp: ENST00000460012.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1740C>T
  hgvsp: ENST00000414191.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.144C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26576
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys598Cys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-155215178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215178
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215178
    reference: chr 3
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.139C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1735C>T
  hgvsp: ENSP00000417502.1:p.Leu579Phe
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1735C>T
  hgvsp: ENSP00000412977.1:p.Leu579Phe
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1789C>T
  hgvsp: ENSP00000402759.2:p.Leu597Phe
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1735C>T
  hgvsp: ENSP00000335469.6:p.Leu579Phe
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1789C>T
  hgvsp: ENSP00000419100.1:p.Leu597Phe
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1789C>T
  hgvsp: ENSP00000345988.7:p.Leu597Phe
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu597Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

3-155215182-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215182
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215182
    reference: chr 3
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1785G>A
  hgvsp: ENSP00000419100.1:p.Met595Ile
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1785G>A
  hgvsp: ENSP00000345988.7:p.Met595Ile
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1731G>A
  hgvsp: ENSP00000335469.6:p.Met577Ile
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.135G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1785G>A
  hgvsp: ENSP00000402759.2:p.Met595Ile
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1731G>A
  hgvsp: ENSP00000412977.1:p.Met577Ile
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1731G>A
  hgvsp: ENSP00000417502.1:p.Met577Ile
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9712
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met595Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-155215195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215195
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215195
    reference: chr 3
allele count: 9
allele frequency: 7.418519922847392e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1718G>A
  hgvsp: ENSP00000412977.1:p.Arg573Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1772G>A
  hgvsp: ENSP00000419100.1:p.Arg591Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.122G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1718G>A
  hgvsp: ENSP00000335469.6:p.Arg573Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1718G>A
  hgvsp: ENSP00000417502.1:p.Arg573Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1772G>A
  hgvsp: ENSP00000345988.7:p.Arg591Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1772G>A
  hgvsp: ENSP00000402759.2:p.Arg591Gln
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26579
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg591Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

3-155215198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215198
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215198
    reference: chr 3
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1715G>A
  hgvsp: ENSP00000412977.1:p.Arg572His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1769G>A
  hgvsp: ENSP00000419100.1:p.Arg590His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1769G>A
  hgvsp: ENSP00000402759.2:p.Arg590His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1769G>A
  hgvsp: ENSP00000345988.7:p.Arg590His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1715G>A
  hgvsp: ENSP00000335469.6:p.Arg572His
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.119G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1715G>A
  hgvsp: ENSP00000417502.1:p.Arg572His
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg590His
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-155215218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215218
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215218
    reference: chr 3
allele count: 2
allele frequency: 1.650056101907465e-5
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1707-12G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1707-12G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1761-12G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.111-12G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1761-12G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1707-12G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1761-12G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-155215222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155215222
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155215222
    reference: chr 3
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1707-16T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1707-16T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.111-16T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1707-16T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1761-16T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1761-16T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1761-16T>C
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-155218444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218444
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218444
    reference: chr 3
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+48C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+48C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+48C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+48C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+48C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+48C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+48C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

3-155218446-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218446
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218446
    reference: chr 3
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+46T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+46T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+46T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+46T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+46T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+46T>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+46T>C
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

3-155218452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218452
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218452
    reference: chr 3
allele count: 13
allele frequency: 1.075873940677966e-4
allele num: 120832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+40G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+40G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+40G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+40G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+40G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+40G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+40G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-155218456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218456
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218456
    reference: chr 3
allele count: 6
allele frequency: 4.963682390509439e-5
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+36C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+36C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+36C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+36C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+36C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+36C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+36C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34157
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-155218462-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218462
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218462
    reference: chr 3
allele count: 2
allele frequency: 1.653931394925738e-5
allele num: 120924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+30A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+30A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+30A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+30A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+30A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+30A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+30A>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34153
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-155218468-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218468
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218468
    reference: chr 3
allele count: 2
allele frequency: 1.653220473482343e-5
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+24C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+24C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+24C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+24C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+24C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+24C>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+24C>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-155218469-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218469
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218469
    reference: chr 3
allele count: 3
allele frequency: 2.478724283235561e-5
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+23C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+23C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+23C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+23C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+23C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+23C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+23C>T
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

3-155218481-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218481
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218481
    reference: chr 3
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1706+11A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1706+11A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1760+11A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1760+11A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.110+11A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1760+11A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1706+11A>G
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

3-155218497-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218497
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218497
    reference: chr 3
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1755G>C
  hgvsp: ENST00000447496.2:c.1755G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1701G>C
  hgvsp: ENST00000460012.1:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1755G>C
  hgvsp: ENST00000340059.7:c.1755G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1755G>C
  hgvsp: ENST00000494598.1:c.1755G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1701G>C
  hgvsp: ENST00000334686.6:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.105G>C
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1701G>C
  hgvsp: ENST00000414191.1:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu585Leu
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

3-155218507-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218507
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218507
    reference: chr 3
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1691G>C
  hgvsp: ENSP00000417502.1:p.Gly564Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1745G>C
  hgvsp: ENSP00000419100.1:p.Gly582Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1745G>C
  hgvsp: ENSP00000402759.2:p.Gly582Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1691G>C
  hgvsp: ENSP00000335469.6:p.Gly564Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1745G>C
  hgvsp: ENSP00000345988.7:p.Gly582Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1691G>C
  hgvsp: ENSP00000412977.1:p.Gly564Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.95G>C
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly582Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

3-155218509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218509
    reference: chr 3
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1743G>A
  hgvsp: ENST00000494598.1:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1743G>A
  hgvsp: ENST00000447496.2:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1743G>A
  hgvsp: ENST00000340059.7:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1689G>A
  hgvsp: ENST00000334686.6:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.93G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1689G>A
  hgvsp: ENST00000414191.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1689G>A
  hgvsp: ENST00000460012.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu581Glu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-155218516-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218516
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218516
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.86G>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1682G>T
  hgvsp: ENSP00000417502.1:p.Gly561Val
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1682G>T
  hgvsp: ENSP00000412977.1:p.Gly561Val
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1736G>T
  hgvsp: ENSP00000402759.2:p.Gly579Val
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1736G>T
  hgvsp: ENSP00000419100.1:p.Gly579Val
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1682G>T
  hgvsp: ENSP00000335469.6:p.Gly561Val
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1736G>T
  hgvsp: ENSP00000345988.7:p.Gly579Val
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly579Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

3-155218522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218522
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218522
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1676G>A
  hgvsp: ENSP00000412977.1:p.Ser559Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1730G>A
  hgvsp: ENSP00000402759.2:p.Ser577Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1730G>A
  hgvsp: ENSP00000345988.7:p.Ser577Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1676G>A
  hgvsp: ENSP00000417502.1:p.Ser559Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1676G>A
  hgvsp: ENSP00000335469.6:p.Ser559Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1730G>A
  hgvsp: ENSP00000419100.1:p.Ser577Asn
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.80G>A
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser577Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-155218526-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218526
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218526
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1672C>A
  hgvsp: ENSP00000417502.1:p.Gln558Lys
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1672C>A
  hgvsp: ENSP00000412977.1:p.Gln558Lys
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1726C>A
  hgvsp: ENSP00000419100.1:p.Gln576Lys
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1726C>A
  hgvsp: ENSP00000402759.2:p.Gln576Lys
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.76C>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1726C>A
  hgvsp: ENSP00000345988.7:p.Gln576Lys
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1672C>A
  hgvsp: ENSP00000335469.6:p.Gln558Lys
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln576Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

3-155218527-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218527
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218527
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1671G>A
  hgvsp: ENST00000414191.1:c.1671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1671G>A
  hgvsp: ENST00000334686.6:c.1671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1725G>A
  hgvsp: ENST00000340059.7:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1671G>A
  hgvsp: ENST00000460012.1:c.1671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1725G>A
  hgvsp: ENST00000494598.1:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.75G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1725G>A
  hgvsp: ENST00000447496.2:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln575Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

3-155218561-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218561
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218561
    reference: chr 3
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1637A>G
  hgvsp: ENSP00000335469.6:p.Lys546Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.41A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1691A>G
  hgvsp: ENSP00000419100.1:p.Lys564Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1691A>G
  hgvsp: ENSP00000345988.7:p.Lys564Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1637A>G
  hgvsp: ENSP00000412977.1:p.Lys546Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1637A>G
  hgvsp: ENSP00000417502.1:p.Lys546Arg
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1691A>G
  hgvsp: ENSP00000402759.2:p.Lys564Arg
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys564Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

3-155218567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218567
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218567
    reference: chr 3
allele count: 6
allele frequency: 4.943642475776152e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1685G>A
  hgvsp: ENSP00000345988.7:p.Arg562Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1631G>A
  hgvsp: ENSP00000412977.1:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.35G>A
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1685G>A
  hgvsp: ENSP00000402759.2:p.Arg562Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1631G>A
  hgvsp: ENSP00000417502.1:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1631G>A
  hgvsp: ENSP00000335469.6:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1685G>A
  hgvsp: ENSP00000419100.1:p.Arg562Gln
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg562Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

3-155218568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218568
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218568
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1684C>T
  hgvsp: ENSP00000402759.2:p.Arg562Trp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1630C>T
  hgvsp: ENSP00000335469.6:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1630C>T
  hgvsp: ENSP00000412977.1:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1630C>T
  hgvsp: ENSP00000417502.1:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1684C>T
  hgvsp: ENSP00000345988.7:p.Arg562Trp
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.34C>T
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1684C>T
  hgvsp: ENSP00000419100.1:p.Arg562Trp
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg562Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

3-155218578-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218578
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218578
    reference: chr 3
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1620T>C
  hgvsp: ENST00000334686.6:c.1620T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1674T>C
  hgvsp: ENST00000340059.7:c.1674T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1674T>C
  hgvsp: ENST00000447496.2:c.1674T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1620T>C
  hgvsp: ENST00000414191.1:c.1620T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1674T>C
  hgvsp: ENST00000494598.1:c.1674T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1620T>C
  hgvsp: ENST00000460012.1:c.1620T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.24T>C
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr558Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-155218580-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155218580
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 155218580
    reference: chr 3
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114805
  ensembl transcript: ENST00000469040
  gene symbol: PLCH1
  hgvsc: ENST00000469040.1:n.22A>G
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000419100
  ensembl transcript: ENST00000494598
  gene symbol: PLCH1
  hgvsc: ENST00000494598.1:c.1672A>G
  hgvsp: ENSP00000419100.1:p.Thr558Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000402759
  ensembl transcript: ENST00000447496
  gene symbol: PLCH1
  hgvsc: ENST00000447496.2:c.1672A>G
  hgvsp: ENSP00000402759.2:p.Thr558Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000417502
  ensembl transcript: ENST00000460012
  gene symbol: PLCH1
  hgvsc: ENST00000460012.1:c.1618A>G
  hgvsp: ENSP00000417502.1:p.Thr540Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000335469
  ensembl transcript: ENST00000334686
  gene symbol: PLCH1
  hgvsc: ENST00000334686.6:c.1618A>G
  hgvsp: ENSP00000335469.6:p.Thr540Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000345988
  ensembl transcript: ENST00000340059
  gene symbol: PLCH1
  hgvsc: ENST00000340059.7:c.1672A>G
  hgvsp: ENSP00000345988.7:p.Thr558Ala
  variant of: http://identifiers.org/hgnc/29185
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114805
  ensembl protein: ENSP00000412977
  ensembl transcript: ENST00000414191
  gene symbol: PLCH1
  hgvsc: ENST00000414191.1:c.1618A>G
  hgvsp: ENSP00000412977.1:p.Thr540Ala
  variant of: http://identifiers.org/hgnc/29185
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Thr558Ala
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.356e0

ClippingRankSum
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DP
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QD
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SIO_000300: 1.14e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 4.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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DP
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 2.050269e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.074e1

FS
type: SiteQuality
SIO_000300: 3.419e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 2.050116e6

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 5.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.645e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
SIO_000300: 2.049778e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.97e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.047959e6

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 6.04e1

FS
type: SiteQuality
SIO_000300: 4.547e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.349446726841995e-4
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 20
allele frequency: 1.21197430614471e-3
allele num: 16502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.009e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

DP
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FS
type: SiteQuality
SIO_000300: 1.928e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001020346917952e-5
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.014e1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

VQSLOD
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ReadPosRankSum
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QD
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FS
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.25925925925926e-4
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

DP
type: SiteQuality
SIO_000300: 2.03677e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 84

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.06318347509113e-3
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 80
allele frequency: 1.209555488358028e-3
allele num: 66140
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 6.01e1

FS
type: SiteQuality
SIO_000300: 6.7e-1

DP
type: SiteQuality
SIO_000300: 2.093017e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65924
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

African
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allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.165e0

FS
type: SiteQuality
SIO_000300: 8.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.011e1

QD
type: SiteQuality
SIO_000300: 1.209e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 2.161719e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.602921320731557e-5
allele num: 65176
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.998e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 2.452249e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.976e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.058159232072275e-5
allele num: 14168
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8470
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.15e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 2.70899e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 6.685609226140733e-4
allele num: 23932
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.976190476190476e-3
allele num: 1008
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
type: SiteQuality
SIO_000300: 3.274594e6

QD
type: SiteQuality
SIO_000300: 1.397e1

MQ
type: SiteQuality
SIO_000300: 6.023e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
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African
type: Population
allele count: 1
allele frequency: 9.92063492063492e-4
allele num: 1008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23932
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.274594e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

MQ
type: SiteQuality
SIO_000300: 6.023e1

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2230
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African
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allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 4418
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.551e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.56e-1

DP
type: SiteQuality
SIO_000300: 3.252905e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 113

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 49946

Latino
type: Population
allele count: 8372
allele frequency: 7.291412645880508e-1
allele num: 11482
num of homozygotes: 3066

African
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allele count: 9624
allele frequency: 9.553305539011316e-1
allele num: 10074
num of homozygotes: 4595

European (Non-Finnish)
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allele count: 53147
allele frequency: 8.025823014195107e-1
allele num: 66220
num of homozygotes: 21350

European (Finnish)
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allele count: 5341
allele frequency: 8.126902008520999e-1
allele num: 6572
num of homozygotes: 2165

East Asian
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allele count: 8136
allele frequency: 9.41884695531373e-1
allele num: 8638
num of homozygotes: 3832

South Asian
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allele count: 13792
allele frequency: 8.441669727016771e-1
allele num: 16338
num of homozygotes: 5842

Other
type: Population
allele count: 748
allele frequency: 8.2560706401766e-1
allele num: 906
num of homozygotes: 306

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.12e-2

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 3.156081e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

QD
type: SiteQuality
SIO_000300: 2.522e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 30
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
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South Asian
type: Population
allele count: 1
allele frequency: 2.262443438914027e-3
allele num: 442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.726e0

ReadPosRankSum
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SIO_000300: 1.42e0

ClippingRankSum
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QD
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SIO_000300: 1.416e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 3.602352e6

GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 119
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63988
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.024e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.328e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 3.676e0

DP
type: SiteQuality
SIO_000300: 2.273101e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521745746720638e-5
allele num: 65714
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 2.25684e6

MQ
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SIO_000300: 5.995e1

FS
type: SiteQuality
SIO_000300: 3.522e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3842
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.045408058907752e-4
allele num: 9778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.054e1

FS
type: SiteQuality
SIO_000300: 3.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.754693805930865e-4
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526158354190831e-5
allele num: 65524
num of homozygotes: 0

African
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allele count: 50
allele frequency: 5.13663447709061e-3
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.526e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.209181e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.355e1

VQSLOD
type: SiteQuality
SIO_000300: 5.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2715
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.123511221334313e-5
allele num: 65322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.17386e6

QD
type: SiteQuality
SIO_000300: 1.584e1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.943e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.719e0

FS
type: SiteQuality
SIO_000300: 3.403e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.349646e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

QD
type: SiteQuality
SIO_000300: 1.681e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 2.358086e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.132711885195633e-5
allele num: 16306
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
type: Population
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African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 2.383973e6

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502476361999099e-5
allele num: 66630
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 2.387141e6

FS
type: SiteQuality
SIO_000300: 1.329e0

VQSLOD
type: SiteQuality
SIO_000300: -7.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.164e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.213e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000840235265874e-5
allele num: 66648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.388394e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.094e1

MQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
SIO_000300: 2.388394e6

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.034348828741352e-4
allele num: 16478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: -7.99e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.388542e6

QD
type: SiteQuality
SIO_000300: 7.43e0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.99e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 2.388542e6

QD
type: SiteQuality
SIO_000300: 7.43e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

FS
type: SiteQuality
SIO_000300: 3.287e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.274e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.389074e6

MQRankSum
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SIO_000300: -1.17e0

QD
type: SiteQuality
SIO_000300: 1.605e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.11e0

DP
type: SiteQuality
SIO_000300: 2.389414e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 6.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.241e1

FS
type: SiteQuality
SIO_000300: 5.991e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.44e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 2.389352e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.390147e6

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

QD
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SIO_000300: 1.171e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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SIO_000300: 9.06e-1

BaseQRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: 8.82e-1

VQSLOD
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DP
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SIO_000300: 2.389909e6

ReadPosRankSum
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SIO_000300: -4.87e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.948e1

BaseQRankSum
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DP
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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South Asian
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 2.389934e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.21153380179307e-4
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num of homozygotes: 0

Latino
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allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
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SIO_000300: 2.390186e6

FS
type: SiteQuality
SIO_000300: 2.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.355e0

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
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SIO_000300: 1.286e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.292e1

MQRankSum
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SIO_000300: 8.96e-1

InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.958e1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 1
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allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

Other
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South Asian
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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DP
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SIO_000300: 2.390358e6

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16510
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Other
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East Asian
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African
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Latino
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European (Finnish)
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
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Latino
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East Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
type: SiteQuality
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FS
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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African
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Other
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European (Finnish)
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MQRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.886e1

MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.403e0

QD
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FS
type: SiteQuality
SIO_000300: 1.363e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.049569676432663e-4
allele num: 66694
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
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SIO_000300: 1.394e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 6.08e-1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 2.390143e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 1.239e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

DP
type: SiteQuality
SIO_000300: 2.389488e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
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South Asian
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allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.765e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.631e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

DP
type: SiteQuality
SIO_000300: 2.386286e6

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.426e1

DP
type: SiteQuality
SIO_000300: 2.384589e6

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 8.734999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -1.616e0

ReadPosRankSum
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SIO_000300: -2.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 902
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
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European (Finnish)
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allele num: 6612
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African
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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African
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allele frequency: 0.0e0
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Latino
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allele count: 10
allele frequency: 8.664009703690869e-4
allele num: 11542
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.509786236132407e-5
allele num: 66522
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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African
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South Asian
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European (Non-Finnish)
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allele count: 2
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allele num: 66532
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East Asian
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Latino
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QD
type: SiteQuality
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MQ
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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Latino
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.005349522149426e-5
allele num: 66548
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European (Finnish)
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African
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.005259203606311e-5
allele num: 66550
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.443e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.472e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 2.876616e6

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.945e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.165e1

DP
type: SiteQuality
SIO_000300: 2.877706e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.613e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

FS
type: SiteQuality
SIO_000300: 3.972e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 2.883017e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99895036737142e-5
allele num: 66690
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 2.167e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 2.886066e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 2.886671e6

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 1.337e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.106e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.987e0

MQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
SIO_000300: 1.3536e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.886732e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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MQRankSum
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MQ
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VQSLOD
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QD
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ClippingRankSum
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FS
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SIO_000300: 6.46e-1

ReadPosRankSum
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11568
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: -2.34e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.941e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.444e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.945e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

FS
type: SiteQuality
SIO_000300: 9.657999999999999e0

DP
type: SiteQuality
SIO_000300: 2.886832e6

GenotypeQuality
all individuals: 3394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 2.886492e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 3.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.292e0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 16506
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 2.886737e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
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allele num: 10402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66692
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East Asian
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Other
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DP
type: SiteQuality
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4