3-195599206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599206
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599206
    reference: chr 3
allele count: 1
allele frequency: 8.413259296651523e-6
allele num: 118860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1392C>T
  hgvsp: ENST00000392400.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3900C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1581C>T
  hgvsp: ENST00000381916.2:c.1581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.816C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.245C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1392C>T
  hgvsp: ENST00000333602.6:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1392C>T
  hgvsp: ENST00000316664.3:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1392C>T
  hgvsp: ENST00000439230.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1497C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.48C>T
  hgvsp: ENST00000416152.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.327C>T
  hgvsp: ENST00000411741.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1488C>T
  hgvsp: ENST00000428187.1:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.472C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.69C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.210C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.221C>T
  hgvsp: ENST00000424563.1:c.221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His527His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

3-195599224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599224
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599224
    reference: chr 3
allele count: 1
allele frequency: 8.402372830087217e-6
allele num: 119014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1374G>A
  hgvsp: ENST00000333602.6:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.798G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1563G>A
  hgvsp: ENST00000381916.2:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3882G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1479G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.30G>A
  hgvsp: ENST00000416152.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1470G>A
  hgvsp: ENST00000428187.1:c.1470G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.454G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.309G>A
  hgvsp: ENST00000411741.1:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1374G>A
  hgvsp: ENST00000316664.3:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1374G>A
  hgvsp: ENST00000439230.1:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.192G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1374G>A
  hgvsp: ENST00000392400.1:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.203G>A
  hgvsp: ENST00000424563.1:c.203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.51G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.227G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu521Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

3-195599239-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599239
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599239
    reference: chr 3
allele count: 1
allele frequency: 8.402937667008386e-6
allele num: 119006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.783C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1359C>G
  hgvsp: ENSP00000395588.1:p.Asp453Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.36C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1548C>G
  hgvsp: ENSP00000371341.2:p.Asp516Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1359C>G
  hgvsp: ENSP00000376201.1:p.Asp453Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1359C>G
  hgvsp: ENSP00000323216.3:p.Asp453Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.188C>G
  hgvsp: ENSP00000390435.1:p.Asp63Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1464C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.15C>G
  hgvsp: ENSP00000398614.1:p.Asp5Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.294C>G
  hgvsp: ENSP00000415126.1:p.Asp98Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.177C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1359C>G
  hgvsp: ENSP00000329425.6:p.Asp453Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1455C>G
  hgvsp: ENSP00000392546.1:p.Asp485Glu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.439C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.212C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3867C>G
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp516Glu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-195599248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599248
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599248
    reference: chr 3
allele count: 1
allele frequency: 8.409721638213775e-6
allele num: 118910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.774G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1350G>A
  hgvsp: ENST00000439230.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.6G>A
  hgvsp: ENST00000416152.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.179G>A
  hgvsp: ENST00000424563.1:c.179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1446G>A
  hgvsp: ENST00000428187.1:c.1446G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1539G>A
  hgvsp: ENST00000381916.2:c.1539G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.285G>A
  hgvsp: ENST00000411741.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1350G>A
  hgvsp: ENST00000316664.3:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1350G>A
  hgvsp: ENST00000392400.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.203G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3858G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.430G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1350G>A
  hgvsp: ENST00000333602.6:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1455G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.168G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser513Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-195599249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599249
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599249
    reference: chr 3
allele count: 26
allele frequency: 2.186637960034986e-4
allele num: 118904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1538C>T
  hgvsp: ENSP00000371341.2:p.Ser513Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1349C>T
  hgvsp: ENSP00000376201.1:p.Ser450Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3857C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.284C>T
  hgvsp: ENSP00000415126.1:p.Ser95Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.202C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.26C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.167C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.178C>T
  hgvsp: ENSP00000390435.1:p.Ser60Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1349C>T
  hgvsp: ENSP00000395588.1:p.Ser450Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.5C>T
  hgvsp: ENSP00000398614.1:p.Ser2Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1349C>T
  hgvsp: ENSP00000323216.3:p.Ser450Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1349C>T
  hgvsp: ENSP00000329425.6:p.Ser450Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.773C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.429C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1445C>T
  hgvsp: ENSP00000392546.1:p.Ser482Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1454C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ser513Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-195599251-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599251
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599251
    reference: chr 3
allele count: 1
allele frequency: 8.412409987213136e-6
allele num: 118872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3855G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1347G>T
  hgvsp: ENST00000316664.3:c.1347G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1443G>T
  hgvsp: ENST00000428187.1:c.1443G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1347G>T
  hgvsp: ENST00000392400.1:c.1347G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.282G>T
  hgvsp: ENST00000411741.1:c.282G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.771G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.3G>T
  hgvsp: ENST00000416152.1:c.3G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.176G>T
  hgvsp: ENST00000424563.1:c.176G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1536G>T
  hgvsp: ENST00000381916.2:c.1536G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1452G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.24G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1347G>T
  hgvsp: ENST00000439230.1:c.1347G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1347G>T
  hgvsp: ENST00000333602.6:c.1347G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.427G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.165G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.200G>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu512Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

3-195599251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599251
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599251
    reference: chr 3
allele count: 1
allele frequency: 8.412409987213136e-6
allele num: 118872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.176G>A
  hgvsp: ENST00000424563.1:c.176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.427G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000398614
  ensembl transcript: ENST00000416152
  gene symbol: TNK2
  hgvsc: ENST00000416152.1:c.3G>A
  hgvsp: ENST00000416152.1:c.3G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.24G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.200G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1536G>A
  hgvsp: ENST00000381916.2:c.1536G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1452G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1347G>A
  hgvsp: ENST00000333602.6:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.771G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1347G>A
  hgvsp: ENST00000392400.1:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1347G>A
  hgvsp: ENST00000439230.1:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1443G>A
  hgvsp: ENST00000428187.1:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1347G>A
  hgvsp: ENST00000316664.3:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.282G>A
  hgvsp: ENST00000411741.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.165G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3855G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu512Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-195599256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599256
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599256
    reference: chr 3
allele count: 1
allele frequency: 8.42034355001684e-6
allele num: 118760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.171G>A
  hgvsp: ENSP00000390435.1:p.Gly58Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1342G>A
  hgvsp: ENSP00000395588.1:p.Gly448Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.277G>A
  hgvsp: ENSP00000415126.1:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1342G>A
  hgvsp: ENSP00000376201.1:p.Gly448Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.766G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.195G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1438G>A
  hgvsp: ENSP00000392546.1:p.Gly480Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1342G>A
  hgvsp: ENSP00000329425.6:p.Gly448Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1342G>A
  hgvsp: ENSP00000323216.3:p.Gly448Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1531G>A
  hgvsp: ENSP00000371341.2:p.Gly511Ser
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3850G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1447G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.160G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.422G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.19G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly511Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

3-195599257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599257
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599257
    reference: chr 3
allele count: 16
allele frequency: 1.347391113955604e-4
allele num: 118748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1341C>T
  hgvsp: ENST00000392400.1:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.421C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1341C>T
  hgvsp: ENST00000316664.3:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.18C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.765C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1341C>T
  hgvsp: ENST00000333602.6:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1437C>T
  hgvsp: ENST00000428187.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1341C>T
  hgvsp: ENST00000439230.1:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.194C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.276C>T
  hgvsp: ENST00000411741.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.170C>T
  hgvsp: ENST00000424563.1:c.170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1530C>T
  hgvsp: ENST00000381916.2:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3849C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.159C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1446C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala510Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

3-195599262-C-CGGAGGTCACCACGTTGCGAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599262
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599283
    reference: chr 3
allele count: 1
allele frequency: 8.426161546369167e-6
allele num: 118678
alternate allele: CGGAGGTCACCACGTTGCGAGG
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsp: ENSP00000371341.2:p.Pro502_Ser508dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsp: ENSP00000329425.6:p.Pro439_Ser445dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsp: ENSP00000323216.3:p.Pro439_Ser445dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsp: ENSP00000376201.1:p.Pro439_Ser445dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsp: ENSP00000395588.1:p.Pro439_Ser445dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsp: ENSP00000392546.1:p.Pro471_Ser477dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsp: ENSP00000415126.1:p.Pro84_Ser90dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsp: ENSP00000390435.1:p.Pro49_Ser55dup
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro502_Ser508dup
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

3-195599263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599263
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599263
    reference: chr 3
allele count: 31
allele frequency: 2.611493943018887e-4
allele num: 118706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.153C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1431C>T
  hgvsp: ENST00000428187.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1335C>T
  hgvsp: ENST00000392400.1:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3843C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.759C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.270C>T
  hgvsp: ENST00000411741.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1335C>T
  hgvsp: ENST00000316664.3:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1335C>T
  hgvsp: ENST00000333602.6:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1524C>T
  hgvsp: ENST00000381916.2:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1335C>T
  hgvsp: ENST00000439230.1:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.188C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.415C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.164C>T
  hgvsp: ENST00000424563.1:c.164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.12C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1440C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22227
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24882
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Ser508Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-195599266-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599266
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599266
    reference: chr 3
allele count: 5
allele frequency: 4.215709419581127e-5
allele num: 118604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.9C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.161C>G
  hgvsp: ENST00000424563.1:c.161C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1428C>G
  hgvsp: ENST00000428187.1:c.1428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.185C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3840C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1332C>G
  hgvsp: ENST00000316664.3:c.1332C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1437C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1332C>G
  hgvsp: ENST00000392400.1:c.1332C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.756C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1332C>G
  hgvsp: ENST00000439230.1:c.1332C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1332C>G
  hgvsp: ENST00000333602.6:c.1332C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.150C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.412C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.267C>G
  hgvsp: ENST00000411741.1:c.267C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1521C>G
  hgvsp: ENST00000381916.2:c.1521C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr507Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

3-195599266-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599266
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599266
    reference: chr 3
allele count: 9
allele frequency: 7.588276955246029e-5
allele num: 118604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.161C>A
  hgvsp: ENST00000424563.1:c.161C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1332C>A
  hgvsp: ENST00000439230.1:c.1332C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1332C>A
  hgvsp: ENST00000333602.6:c.1332C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1332C>A
  hgvsp: ENST00000392400.1:c.1332C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1332C>A
  hgvsp: ENST00000316664.3:c.1332C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1428C>A
  hgvsp: ENST00000428187.1:c.1428C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.185C>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1437C>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1521C>A
  hgvsp: ENST00000381916.2:c.1521C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.756C>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3840C>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.267C>A
  hgvsp: ENST00000411741.1:c.267C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.150C>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.9C>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.412C>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr507Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-195599267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599267
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599267
    reference: chr 3
allele count: 2
allele frequency: 1.686482840037103e-5
allele num: 118590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1331C>T
  hgvsp: ENSP00000329425.6:p.Thr444Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.184C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1331C>T
  hgvsp: ENSP00000395588.1:p.Thr444Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3839C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1436C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.160C>T
  hgvsp: ENSP00000390435.1:p.Thr54Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.755C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1520C>T
  hgvsp: ENSP00000371341.2:p.Thr507Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478715
  gene symbol: TNK2
  hgvsc: ENST00000478715.1:n.8C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1427C>T
  hgvsp: ENSP00000392546.1:p.Thr476Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1331C>T
  hgvsp: ENSP00000323216.3:p.Thr444Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1331C>T
  hgvsp: ENSP00000376201.1:p.Thr444Ile
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.411C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.149C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.266C>T
  hgvsp: ENSP00000415126.1:p.Thr89Ile
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr507Ile
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-195599275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599275
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599275
    reference: chr 3
allele count: 12
allele frequency: 1.014816318246397e-4
allele num: 118248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1323C>T
  hgvsp: ENST00000439230.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1323C>T
  hgvsp: ENST00000316664.3:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.403C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1323C>T
  hgvsp: ENST00000333602.6:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.258C>T
  hgvsp: ENST00000411741.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.141C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.747C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.176C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1419C>T
  hgvsp: ENST00000428187.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.152C>T
  hgvsp: ENST00000424563.1:c.152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1428C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1323C>T
  hgvsp: ENST00000392400.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1512C>T
  hgvsp: ENST00000381916.2:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3831C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn504Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

3-195599282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599282
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599282
    reference: chr 3
allele count: 1
allele frequency: 8.485794779539051e-6
allele num: 117844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1316C>T
  hgvsp: ENSP00000376201.1:p.Pro439Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3824C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.145C>T
  hgvsp: ENSP00000390435.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.251C>T
  hgvsp: ENSP00000415126.1:p.Pro84Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1421C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1316C>T
  hgvsp: ENSP00000323216.3:p.Pro439Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1316C>T
  hgvsp: ENSP00000395588.1:p.Pro439Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.740C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1505C>T
  hgvsp: ENSP00000371341.2:p.Pro502Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1316C>T
  hgvsp: ENSP00000329425.6:p.Pro439Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.134C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1412C>T
  hgvsp: ENSP00000392546.1:p.Pro471Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.169C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.396C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro502Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

3-195599288-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599288
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599288
    reference: chr 3
allele count: 1
allele frequency: 8.51397142711189e-6
allele num: 117454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.128C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.163C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1406C>T
  hgvsp: ENSP00000392546.1:p.Pro469Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1310C>T
  hgvsp: ENSP00000376201.1:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.390C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1310C>T
  hgvsp: ENSP00000323216.3:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.734C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.139C>T
  hgvsp: ENSP00000390435.1:p.Pro47Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1499C>T
  hgvsp: ENSP00000371341.2:p.Pro500Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1310C>T
  hgvsp: ENSP00000329425.6:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3818C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.245C>T
  hgvsp: ENSP00000415126.1:p.Pro82Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1310C>T
  hgvsp: ENSP00000395588.1:p.Pro437Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1415C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro500Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-195599307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599307
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599307
    reference: chr 3
allele count: 1
allele frequency: 8.693535487011857e-6
allele num: 115028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1387C>T
  hgvsp: ENSP00000392546.1:p.Arg463Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1396C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1291C>T
  hgvsp: ENSP00000323216.3:p.Arg431Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.109C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1480C>T
  hgvsp: ENSP00000371341.2:p.Arg494Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.226C>T
  hgvsp: ENSP00000415126.1:p.Arg76Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1291C>T
  hgvsp: ENSP00000395588.1:p.Arg431Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.120C>T
  hgvsp: ENSP00000390435.1:p.Arg41Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.715C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1291C>T
  hgvsp: ENSP00000376201.1:p.Arg431Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3799C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1291C>T
  hgvsp: ENSP00000329425.6:p.Arg431Trp
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.144C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.371C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg494Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-195599321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599321
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599321
    reference: chr 3
allele count: 3
allele frequency: 2.647884340412011e-5
allele num: 113298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3785G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1277G>A
  hgvsp: ENSP00000376201.1:p.Arg426His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1277G>A
  hgvsp: ENSP00000323216.3:p.Arg426His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1373G>A
  hgvsp: ENSP00000392546.1:p.Arg458His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.130G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1277G>A
  hgvsp: ENSP00000329425.6:p.Arg426His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.106G>A
  hgvsp: ENSP00000390435.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1277G>A
  hgvsp: ENSP00000395588.1:p.Arg426His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.95G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.212G>A
  hgvsp: ENSP00000415126.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1382G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.701G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1466G>A
  hgvsp: ENSP00000371341.2:p.Arg489His
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.357G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg489His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-195599329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599329
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599329
    reference: chr 3
allele count: 3
allele frequency: 2.684323550465283e-5
allele num: 111760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1269C>T
  hgvsp: ENST00000392400.1:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1269C>T
  hgvsp: ENST00000333602.6:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1365C>T
  hgvsp: ENST00000428187.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3777C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.349C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1269C>T
  hgvsp: ENST00000439230.1:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.98C>T
  hgvsp: ENST00000424563.1:c.98C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.204C>T
  hgvsp: ENST00000411741.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.122C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1269C>T
  hgvsp: ENST00000316664.3:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.693C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1458C>T
  hgvsp: ENST00000381916.2:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.87C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1374C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr486Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

3-195599332-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599332
    reference: chr 3
allele count: 2
allele frequency: 1.795203217004165e-5
allele num: 111408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3774C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1371C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.201C>G
  hgvsp: ENSP00000415126.1:p.Asn67Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1266C>G
  hgvsp: ENSP00000395588.1:p.Asn422Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1362C>G
  hgvsp: ENSP00000392546.1:p.Asn454Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1266C>G
  hgvsp: ENSP00000376201.1:p.Asn422Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.690C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.95C>G
  hgvsp: ENSP00000390435.1:p.Asn32Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.119C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1266C>G
  hgvsp: ENSP00000323216.3:p.Asn422Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.346C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.84C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1455C>G
  hgvsp: ENSP00000371341.2:p.Asn485Lys
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1266C>G
  hgvsp: ENSP00000329425.6:p.Asn422Lys
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn485Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

3-195599334-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599334
    reference: chr 3
allele count: 2
allele frequency: 1.801899201758653e-5
allele num: 110994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.93A>T
  hgvsp: ENSP00000390435.1:p.Asn32Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1264A>T
  hgvsp: ENSP00000329425.6:p.Asn422Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1360A>T
  hgvsp: ENSP00000392546.1:p.Asn454Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1369A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1264A>T
  hgvsp: ENSP00000323216.3:p.Asn422Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1453A>T
  hgvsp: ENSP00000371341.2:p.Asn485Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.688A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.199A>T
  hgvsp: ENSP00000415126.1:p.Asn67Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1264A>T
  hgvsp: ENSP00000376201.1:p.Asn422Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1264A>T
  hgvsp: ENSP00000395588.1:p.Asn422Tyr
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3772A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.344A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.117A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.82A>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn485Tyr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

3-195599338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599338
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599338
    reference: chr 3
allele count: 3
allele frequency: 2.749115701116141e-5
allele num: 109126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1449C>T
  hgvsp: ENST00000381916.2:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1260C>T
  hgvsp: ENST00000316664.3:c.1260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1260C>T
  hgvsp: ENST00000439230.1:c.1260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.195C>T
  hgvsp: ENST00000411741.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3768C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1356C>T
  hgvsp: ENST00000428187.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1365C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.78C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1260C>T
  hgvsp: ENST00000392400.1:c.1260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.684C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.89C>T
  hgvsp: ENST00000424563.1:c.89C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1260C>T
  hgvsp: ENST00000333602.6:c.1260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.340C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.113C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala483Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-195599343-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599343
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599343
    reference: chr 3
allele count: 1
allele frequency: 9.23838734710469e-6
allele num: 108244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.335A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-2A>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-2A>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21783
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1446-2A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-195599345-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599345
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599345
    reference: chr 3
allele count: 32
allele frequency: 2.972596377148165e-4
allele num: 107650
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.333G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-4G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-4G>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21505
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: c.1446-4G>T
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-195599345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599345
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599345
    reference: chr 3
allele count: 6
allele frequency: 5.57361820715281e-5
allele num: 107650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.333G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-4G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-4G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21505
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1446-4G>A
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

3-195599346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599346
    reference: chr 3
allele count: 5
allele frequency: 4.650557136744982e-5
allele num: 107514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.332C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-5C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-5C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1446-5C>T
num of homozygotes: 1
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

3-195599347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599347
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599347
    reference: chr 3
allele count: 12
allele frequency: 1.118985453189109e-4
allele num: 107240
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.331G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-6G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-6G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16931
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1446-6G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

3-195599348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599348
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599348
    reference: chr 3
allele count: 2
allele frequency: 1.873746931739399e-5
allele num: 106738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.330C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-7C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-7C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1446-7C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-195599352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599352
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599352
    reference: chr 3
allele count: 6
allele frequency: 5.678914191606565e-5
allele num: 105654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.326C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-11C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-11C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-195599361-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599361
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599361
    reference: chr 3
allele count: 2
allele frequency: 1.953468383114219e-5
allele num: 102382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.317G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-20G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-20G>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-195599361-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599361
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599361
    reference: chr 3
allele count: 8
allele frequency: 7.813873532456878e-5
allele num: 102382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.317G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-20G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-20G>C
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

3-195599361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599361
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599361
    reference: chr 3
allele count: 3
allele frequency: 2.930202574671329e-5
allele num: 102382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.317G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-20G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-195599362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599362
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599362
    reference: chr 3
allele count: 4
allele frequency: 3.909151323247723e-5
allele num: 102324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.316C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-21C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-21C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10754
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-195599363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599363
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599363
    reference: chr 3
allele count: 880
allele frequency: 8.661076335577339e-3
allele num: 101604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.315C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-22C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-22C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12166
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16120
  bin: 2.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 3.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 11
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/3-195599368-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599368
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599368
    reference: chr 3
allele count: 2
allele frequency: 2.003967856355584e-5
allele num: 99802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.310G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-27G>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-27G>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

3-195599368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599368
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599368
    reference: chr 3
allele count: 13
allele frequency: 1.30257910663113e-4
allele num: 99802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.310G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-27G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-27G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

3-195599369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599369
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599369
    reference: chr 3
allele count: 6
allele frequency: 6.12282384635794e-5
allele num: 97994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.309C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-28C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18412
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

3-195599370-C-CCAGGCGTGGCGGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599370
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599384
    reference: chr 3
allele count: 1
allele frequency: 1.018994049074753e-5
allele num: 98136
alternate allele: CCAGGCGTGGCGGGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

3-195599373-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599373
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599373
    reference: chr 3
allele count: 1
allele frequency: 1.050331904881943e-5
allele num: 95208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.305C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-32C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-32C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

3-195599375-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599375
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599375
    reference: chr 3
allele count: 1
allele frequency: 1.052964093924397e-5
allele num: 94970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.303G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-34G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-34G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

3-195599377-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599377
    reference: chr 3
allele count: 1
allele frequency: 1.058380254857965e-5
allele num: 94484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.301A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-36A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-36A>C
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-195599377-TGGCGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599372
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 94484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-41_1362-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-41_192-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-41_110-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.296_300delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-41_1257-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-41_681-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-41_75-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-41_1257-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-41_1257-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-41_86-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-41_1257-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-41_1446-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-41_3765-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-41_1353-37delCCGCC
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: TGGCGG
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

3-195599380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599380
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599380
    reference: chr 3
allele count: 4
allele frequency: 4.322455154527772e-5
allele num: 92540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.298G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-39G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-39G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-195599381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599381
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599381
    reference: chr 3
allele count: 3
allele frequency: 3.207321245295929e-5
allele num: 93536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.297C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-40C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-40C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14307
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-195599382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599382
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599382
    reference: chr 3
allele count: 2
allele frequency: 2.195534283267833e-5
allele num: 91094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.296C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-41C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-41C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16136
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-195599392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599392
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599392
    reference: chr 3
allele count: 31
allele frequency: 3.666469544648137e-4
allele num: 84550
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.286C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-51C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-51C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18402
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-195599393-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195599393
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195599393
    reference: chr 3
allele count: 6
allele frequency: 7.112206917806596e-5
allele num: 84362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.681-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.86-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1257-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1257-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.192-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1257-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000468680
  gene symbol: TNK2
  hgvsc: ENST00000468680.1:n.285C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1446-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1353-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3765-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.75-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1362-52C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1257-52C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14981
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18448
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195603272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603272
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603272
    reference: chr 3
allele count: 1
allele frequency: 7.849293563579278e-5
allele num: 12740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+210G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.191+43G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1852G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+176G>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-3931G>C
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-195603290-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603290
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603290
    reference: chr 3
allele count: 6
allele frequency: 4.710315591144607e-4
allele num: 12738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.191+25A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-3949A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+192A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1834A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+158A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1834A>G
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-195603329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603329
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603329
    reference: chr 3
allele count: 11
allele frequency: 8.601814200813263e-4
allele num: 12788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+153G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.177G>A
  hgvsp: ENST00000411741.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+119G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1795G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-3988G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln59Gln
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-195603344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603344
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603344
    reference: chr 3
allele count: 3
allele frequency: 2.34338384627402e-4
allele num: 12802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+104G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+138G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.162G>A
  hgvsp: ENST00000411741.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1780G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4003G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1780G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro54Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-195603364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603364
    reference: chr 3
allele count: 24
allele frequency: 1.872659176029963e-3
allele num: 12816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+118A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4023A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.142A>G
  hgvsp: ENSP00000415126.1:p.Met48Val
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1760A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+84A>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1760A>G
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met48Val
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

3-195603385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603385
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603385
    reference: chr 3
allele count: 2
allele frequency: 1.575299306868305e-4
allele num: 12696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4044C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.127-6C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+97C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+63C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1739C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1739C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.127-6C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-195603402-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603402
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603402
    reference: chr 3
allele count: 1
allele frequency: 7.944073721004132e-5
allele num: 12588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4061A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+46A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+80A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1722A>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.127-23A>C
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-195603404-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603404
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603404
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 12602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+44T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1720T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.127-25T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4063T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+78T>C
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

3-195603419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603419
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603419
    reference: chr 3
allele count: 30
allele frequency: 2.38739455674041e-3
allele num: 12566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+63G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4078G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.127-40G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+29G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1705G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1705G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11530
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

3-195603420-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603420
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603420
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 12574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+62C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+28C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4079C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1704C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.127-41C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-195603432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603432
    reference: chr 3
allele count: 35
allele frequency: 2.794188088775347e-3
allele num: 12526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+16G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+50G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1692G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4091G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.126+50G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17196
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

3-195603433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603433
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603433
    reference: chr 3
allele count: 3
allele frequency: 2.398848552694707e-4
allele num: 12506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+15C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+49C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.126+49C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4092C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1691C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1691C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-195603440-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603440
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603440
    reference: chr 3
allele count: 2
allele frequency: 1.60333493666827e-4
allele num: 12474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4099T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.126+42T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.85+42T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1684T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.74+8T>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1684T>G
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.74+8T>G
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-195603501-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603501
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603501
    reference: chr 3
allele count: 2
allele frequency: 1.67897918065816e-4
allele num: 11912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.21T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.66T>C
  hgvsp: ENSP00000390435.1:p.Cys23Arg
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.107T>C
  hgvsp: ENSP00000415126.1:p.Val36Ala
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4160T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1623T>C
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1623T>C
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys23Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-195603502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603502
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603502
    reference: chr 3
allele count: 1
allele frequency: 8.433125316242199e-5
allele num: 11858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4161G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.106G>A
  hgvsp: ENSP00000415126.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.65G>A
  hgvsp: ENST00000424563.1:c.65G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.20G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1622G>A
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1622G>A
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val36Met
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-195603503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603503
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603503
    reference: chr 3
allele count: 6
allele frequency: 5.048805116122518e-4
allele num: 11884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.105C>T
  hgvsp: ENST00000411741.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.19C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.64C>T
  hgvsp: ENSP00000390435.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1621C>T
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4162C>T
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9246
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro22Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195603511-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195603511
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195603511
    reference: chr 3
allele count: 1
allele frequency: 8.457374830852504e-5
allele num: 11824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000323216
  ensembl transcript: ENST00000316664
  gene symbol: TNK2
  hgvsc: ENST00000316664.3:c.1256+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000371341
  ensembl transcript: ENST00000381916
  gene symbol: TNK2
  hgvsc: ENST00000381916.2:c.1445+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000329425
  ensembl transcript: ENST00000333602
  gene symbol: TNK2
  hgvsc: ENST00000333602.6:c.1256+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000486523
  gene symbol: TNK2
  hgvsc: ENST00000486523.1:n.110-4170C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000478623
  gene symbol: TNK2
  hgvsc: ENST00000478623.1:n.11C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000415126
  ensembl transcript: ENST00000411741
  gene symbol: TNK2
  hgvsc: ENST00000411741.1:c.97C>G
  hgvsp: ENSP00000415126.1:p.Leu33Val
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000489628
  gene symbol: TNK2
  hgvsc: ENST00000489628.1:n.680+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000464041
  gene symbol: TNK2
  hgvsc: ENST00000464041.1:n.1361+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000392546
  ensembl transcript: ENST00000428187
  gene symbol: TNK2
  hgvsc: ENST00000428187.1:c.1352+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000395588
  ensembl transcript: ENST00000439230
  gene symbol: TNK2
  hgvsc: ENST00000439230.1:c.1256+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl transcript: ENST00000481865
  gene symbol: TNK2
  hgvsc: ENST00000481865.1:n.3764+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000376201
  ensembl transcript: ENST00000392400
  gene symbol: TNK2
  hgvsc: ENST00000392400.1:c.1256+1613C>G
  variant of: http://identifiers.org/hgnc/19297
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000061938
  ensembl protein: ENSP00000390435
  ensembl transcript: ENST00000424563
  gene symbol: TNK2
  hgvsc: ENST00000424563.1:c.56C>G
  hgvsp: ENST00000424563.1:c.56C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19297
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu33Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1080
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24603
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22567
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 440
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538366869731093e-5
allele num: 65004
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.899e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.638e0

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.55008e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.271e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

GenotypeDepth
all individuals: 911
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22342
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 635
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8844
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24751
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.899029895070283e-5
allele num: 10102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.551935e6

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 8.43e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

FS
type: SiteQuality
SIO_000300: 3.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

GenotypeDepth
all individuals: 24737
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 936
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 759
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1396
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.533742331288344e-5
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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East Asian
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Latino
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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QD
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16358
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 24
allele frequency: 3.68211107701749e-4
allele num: 65180
num of homozygotes: 0

Other
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BaseQRankSum
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SIO_000300: 1.05e-1

FS
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QD
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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QD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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FS
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DP
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MQRankSum
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.895111814763506e-5
allele num: 10106
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.68830770175277e-4
allele num: 65154
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.678362573099415e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

MQ
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SIO_000300: 5.95e1

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

East Asian
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allele count: 1
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allele num: 8550
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ReadPosRankSum
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SIO_000300: 1.81e-1

MQRankSum
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MQ
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QD
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VQSLOD
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BaseQRankSum
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DP
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SIO_000300: 1.547619e6

InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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ClippingRankSum
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SIO_000300: 4.94e-1

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.617801047120419e-4
allele num: 11460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.298170207540219e-4
allele num: 65144
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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MQRankSum
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SIO_000300: 3.26e-1

VQSLOD
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SIO_000300: 2.11e0

ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 9.2e-3

FS
type: SiteQuality
SIO_000300: 1.754e0

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.975894092076665e-4
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.535390756947643e-5
allele num: 65130
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.210408644888833e-5
allele num: 16102
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: 1.64e-1

QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 1.053124268663702e-3
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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allele num: 6364
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VQSLOD
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MQ
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

Latino
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allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.690695029356614e-4
allele num: 65062
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64986
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.442468754026543e-5
allele num: 15522
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.967e1

QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.533385600418136e-5
allele num: 15306
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64864
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 852
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.67e-1

MQRankSum
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VQSLOD
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DP
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QD
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

FS
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
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SIO_000300: 1.973e0

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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SIO_000300: 5.451e1

BaseQRankSum
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ClippingRankSum
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SIO_000300: 3.68e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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Latino
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European (Non-Finnish)
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allele count: 2
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allele num: 63602
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African
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BaseQRankSum
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DP
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QD
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MQ
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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East Asian
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Other
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African
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European (Finnish)
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 1.010509296685529e-4
allele num: 9896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.282051282051282e-3
allele num: 780
num of homozygotes: 0

DP
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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SIO_000300: 6.0e1

FS
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SIO_000300: 1.649e0

BaseQRankSum
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SIO_000300: 4.67e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11794
num of homozygotes: 0

African
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allele frequency: 2.028809089064719e-4
allele num: 9858
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62842
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.1e-3

ReadPosRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.928e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.19047619047619e-4
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.212748184797276e-5
allele num: 62252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQRankSum
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SIO_000300: 1.82e-1

ClippingRankSum
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SIO_000300: -1.294e0

DP
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SIO_000300: 1.418224e6

FS
type: SiteQuality
SIO_000300: 1.034e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
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SIO_000300: 3.44e0

BaseQRankSum
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SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613944480309878e-5
allele num: 61960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

MQ
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SIO_000300: 5.927e1

FS
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SIO_000300: 3.336e0

VQSLOD
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SIO_000300: 1.5e0

ReadPosRankSum
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SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.402834e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 31

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 3.192584963954686e-3
allele num: 9710
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.620272853948605e-5
allele num: 61718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

FS
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SIO_000300: 7.3e-1

MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.27e-1

MQ
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SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.396284e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

African
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South Asian
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Other
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European (Finnish)
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allele frequency: 1.706484641638225e-4
allele num: 5860
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Latino
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European (Non-Finnish)
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allele count: 5
allele frequency: 8.101364269743025e-5
allele num: 61718
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 0
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South Asian
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allele count: 5
allele frequency: 4.973145016908693e-4
allele num: 10054
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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SIO_000300: 3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.002e-1

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.848e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 1.38915e6

FS
type: SiteQuality
SIO_000300: 3.333e0

QD
type: SiteQuality
SIO_000300: 1.833e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.035411058190101e-4
allele num: 9658
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.973438621679828e-5
allele num: 11144
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.624009354293881e-4
allele num: 61576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -3.3e-3

ReadPosRankSum
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FS
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SIO_000300: 4.031e0

ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.018744906275469e-4
allele num: 9816
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.629619972622385e-5
allele num: 61364
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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VQSLOD
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SIO_000300: 2.3e-3

MQ
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SIO_000300: 6.0e1

DP
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InbreedingCoeff
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SIO_000300: -3.5e-3

BaseQRankSum
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MQRankSum
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SIO_000300: -3.15e-1

QD
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SIO_000300: 8.289999999999999e0

ClippingRankSum
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SIO_000300: -7.7e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60910
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.439709882139619e-4
allele num: 11030
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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SIO_000300: -4.4e-3

ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.368591255137102e-5
allele num: 59372
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
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African
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VQSLOD
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MQ
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DP
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FS
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 59372
num of homozygotes: 0

South Asian
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African
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Latino
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Other
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.368591255137102e-5
allele num: 59372
num of homozygotes: 0

South Asian
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allele num: 8850
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.644314868804665e-4
allele num: 5488
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.371203182415804e-5
allele num: 59326
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 1.81e0

ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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QD
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MQ
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ClippingRankSum
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SIO_000300: -2.97e-1

GenotypeDepth
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variant carriers: 28

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

African
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allele count: 13
allele frequency: 1.43014301430143e-3
allele num: 9090
num of homozygotes: 0

European (Non-Finnish)
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allele count: 602
allele frequency: 1.020823441633317e-2
allele num: 58972
num of homozygotes: 7

European (Finnish)
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allele count: 241
allele frequency: 4.43994104642594e-2
allele num: 5428
num of homozygotes: 4

Latino
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allele count: 14
allele frequency: 1.30890052356021e-3
allele num: 10696
num of homozygotes: 0

Other
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allele count: 10
allele frequency: 1.453488372093023e-2
allele num: 688
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.448751551938198e-5
allele num: 57992
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.54e-1

VQSLOD
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FS
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MQ
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ReadPosRankSum
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SIO_000300: -1.52e-1

MQRankSum
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DP
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SIO_000300: 1.117389e6

BaseQRankSum
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SIO_000300: 1.74e0

InbreedingCoeff
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SIO_000300: 9.299999999999999e-3

QD
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SIO_000300: 1.173e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.970621215519175e-4
allele num: 8918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.448751551938198e-5
allele num: 57992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.475080538184574e-5
allele num: 10554
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.357934449422306e-4
allele num: 8482
num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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Latino
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allele num: 10412
num of homozygotes: 0

South Asian
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allele frequency: 4.829751267809708e-4
allele num: 8282
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.754262858746755e-5
allele num: 57004
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 57090
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.15233924867481e-4
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Latino
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East Asian
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South Asian
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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Other
type: Population
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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QD
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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East Asian
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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DP
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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African
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Latino
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Other
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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East Asian
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Other
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South Asian
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5008
bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 33

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2095
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variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.003842459173871e-5
allele num: 49968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6732
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 3.665490089600869e-3
allele num: 7366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.122334455667789e-4
allele num: 8910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 1.444e1

FS
type: SiteQuality
SIO_000300: 1.716e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 8.28995e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeDepth
all individuals: 10186
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6839
bin: 3.75e1
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GenotypeQuality
all individuals: 2243
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.25e1
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GenotypeQuality
all individuals: 2680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5794
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
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variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.204722512248012e-4
allele num: 49804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4050
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 8.28282e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.037e1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
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variant carriers: 0

GenotypeDepth
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 386
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variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 382
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GenotypeQuality
all individuals: 3287
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 74
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GenotypeQuality
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GenotypeQuality
all individuals: 2039
bin: 2.5e0
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GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5191
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GenotypeQuality
all individuals: 789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.313370107696349e-4
allele num: 7614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.744e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.243e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 9.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 2.88444e5

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 896
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
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GenotypeQuality
all individuals: 385
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5605
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.563402467839327e-4
allele num: 7618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.464285714285714e-3
allele num: 224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.586e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 2.8987e5

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

FS
type: SiteQuality
SIO_000300: 3.677e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeDepth
all individuals: 148
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1612
bin: 7.5e0
variant carriers: 11

GenotypeDepth
all individuals: 494
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 152
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5225
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 576
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.639344262295082e-2
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3844
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

DP
type: SiteQuality
SIO_000300: 2.9202e5

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeDepth
all individuals: 856
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 13
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variant carriers: 2

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5116
bin: 7.5e0
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GenotypeQuality
all individuals: 8
bin: 4.75e1
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GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 2.5e0
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GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
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GenotypeQuality
all individuals: 6
bin: 5.25e1
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GenotypeQuality
all individuals: 260
bin: 7.25e1
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GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 770
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.200208008320333e-4
allele num: 3846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.086e0

FS
type: SiteQuality
SIO_000300: 8.61e-1

QD
type: SiteQuality
SIO_000300: 1.008e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 2.92578e5

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeDepth
all individuals: 868
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variant carriers: 0

GenotypeDepth
all individuals: 19
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variant carriers: 8

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 545
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 397
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 1349
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5959
bin: 7.5e0
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GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 773
bin: 6.25e1
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GenotypeQuality
all individuals: 402
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variant carriers: 3

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 391
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variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 2

GenotypeQuality
all individuals: 3313
bin: 9.75e1
variant carriers: 24

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.594771241830065e-2
allele num: 612
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.208333333333333e-4
allele num: 3840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.265e1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.624671916010499e-4
allele num: 7620
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.85e-1

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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QD
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BaseQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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SIO_000300: -2.3e-2

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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MQ
type: SiteQuality
SIO_000300: 5.344e1

FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 4.862236628849271e-3
allele num: 3702
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 1.443948542924652e-3
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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Latino
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European (Finnish)
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Other
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South Asian
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allele frequency: 4.599211563731932e-3
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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MQ
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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MQRankSum
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QD
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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InbreedingCoeff
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SIO_000300: -6.950000000000001e-2

BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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FS
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