19-19045213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045213
    reference: chr 19
allele count: 1
allele frequency: 1.353106733059104e-5
allele num: 73904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.310G>A
  hgvsp: ENSP00000221222.11:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.310G>A
  hgvsp: ENSP00000446026.1:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.310G>A
  hgvsp: ENSP00000396154.2:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1359G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.310G>A
  hgvsp: ENSP00000376162.2:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2380G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.310G>A
  hgvsp: ENSP00000470659.1:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.310G>A
  hgvsp: ENSP00000348150.6:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.310G>A
  hgvsp: ENSP00000472815.1:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.310G>A
  hgvsp: ENSP00000439937.1:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu104Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-19045214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045214
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045214
    reference: chr 19
allele count: 6
allele frequency: 8.300592108903768e-5
allele num: 72284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.309C>T
  hgvsp: ENST00000600077.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2381C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.309C>T
  hgvsp: ENST00000539827.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1360C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.309C>T
  hgvsp: ENST00000221222.11:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.309C>T
  hgvsp: ENST00000392351.3:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.309C>T
  hgvsp: ENST00000433218.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.309C>T
  hgvsp: ENST00000355887.6:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.309C>T
  hgvsp: ENST00000596482.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.309C>T
  hgvsp: ENST00000542541.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17496
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2723
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala103Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-19045215-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045215
    reference: chr 19
allele count: 1
allele frequency: 1.387809481514378e-5
allele num: 72056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1361C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.308C>G
  hgvsp: ENSP00000376162.2:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.308C>G
  hgvsp: ENSP00000221222.11:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.308C>G
  hgvsp: ENSP00000396154.2:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.308C>G
  hgvsp: ENSP00000439937.1:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.308C>G
  hgvsp: ENSP00000470659.1:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.308C>G
  hgvsp: ENSP00000472815.1:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.308C>G
  hgvsp: ENSP00000348150.6:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.308C>G
  hgvsp: ENSP00000446026.1:p.Ala103Gly
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2382C>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17585
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala103Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-19045216-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045216
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045216
    reference: chr 19
allele count: 2
allele frequency: 2.77192593413904e-5
allele num: 72152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.307G>T
  hgvsp: ENSP00000396154.2:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.307G>T
  hgvsp: ENSP00000439937.1:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.307G>T
  hgvsp: ENSP00000348150.6:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1362G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.307G>T
  hgvsp: ENSP00000472815.1:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.307G>T
  hgvsp: ENSP00000221222.11:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.307G>T
  hgvsp: ENSP00000470659.1:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.307G>T
  hgvsp: ENSP00000376162.2:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2383G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.307G>T
  hgvsp: ENSP00000446026.1:p.Ala103Ser
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21603
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9832
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17697
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ala103Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-19045223-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045223
    reference: chr 19
allele count: 1
allele frequency: 1.488937196629046e-5
allele num: 67162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2390T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1369T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-4T>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 6.75e1
  variant carriers: 0
hgvs: c.304-4T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-19045226-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045226
    reference: chr 19
allele count: 2
allele frequency: 3.21316110789795e-5
allele num: 62244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1372C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2393C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-7C>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 0
hgvs: c.304-7C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

19-19045229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045229
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045229
    reference: chr 19
allele count: 82
allele frequency: 1.350194296252388e-3
allele num: 60732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2396A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-10A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1375A>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21011
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22391
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38767
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

19-19045232-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045232
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045232
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 57122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-13C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2399C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1378C>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10087
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

19-19045235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045235
    reference: chr 19
allele count: 1
allele frequency: 1.928045347626576e-5
allele num: 51866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2402C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1381C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-16C>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19227
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

19-19045236-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045236
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045234
    reference: chr 19
allele count: 3
allele frequency: 5.85480093676815e-5
allele num: 51240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1384_304-1383delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2405_15-2404delTT
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-19_304-18delTT
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19213
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: GAA
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

19-19045240-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045240
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045240
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 42554
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1386T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-21T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2407T>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17697
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19577
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

19-19045244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045244
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045244
    reference: chr 19
allele count: 1
allele frequency: 2.710614767429253e-5
allele num: 36892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2411T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1390T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-25T>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13321
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

19-19045246-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045246
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045246
    reference: chr 19
allele count: 1
allele frequency: 3.127736769673464e-5
allele num: 31972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2413A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1392A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-27A>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26034
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

19-19045255-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19045255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19045255
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 17942
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.304-1401T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.15-2422T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.304-36T>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17629
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4796
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-19049112-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049112
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049112
    reference: chr 19
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+666A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+50A>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-19049120-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049120
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049120
    reference: chr 19
allele count: 1
allele frequency: 8.592246356887545e-6
allele num: 116384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+658T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+42T>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

19-19049125-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049125
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049125
    reference: chr 19
allele count: 1
allele frequency: 8.580450302031851e-6
allele num: 116544
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+653G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+37G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

19-19049128-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049128
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049128
    reference: chr 19
allele count: 1
allele frequency: 8.577064928381508e-6
allele num: 116590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+650G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+34G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-19049128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049128
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049128
    reference: chr 19
allele count: 3
allele frequency: 2.573119478514452e-5
allele num: 116590
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+650G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+34G>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48161
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

19-19049129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049129
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049129
    reference: chr 19
allele count: 788
allele frequency: 6.734467139560722e-3
allele num: 117010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+649C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+33C>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 5.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 9.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 8.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 7.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 5.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 4.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 6.75e1
  variant carriers: 5
num of homozygotes: 18
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-19049131-TTCCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049131
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049127
    reference: chr 19
allele count: 1
allele frequency: 8.537813978109045e-6
allele num: 117126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+643_14+646delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+27_303+30delGGGA
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: TTCCC
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

19-19049133-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049133
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049133
    reference: chr 19
allele count: 1
allele frequency: 8.531404098486529e-6
allele num: 117214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+645G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+29G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-19049136-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049136
    reference: chr 19
allele count: 14
allele frequency: 1.19163134330899e-4
allele num: 117486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+642A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+26A>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-19049136-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049136
    reference: chr 19
allele count: 546
allele frequency: 4.647362238905061e-3
allele num: 117486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+642A>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+26A>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 9.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 5.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 6.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 6.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 16
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-19049140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049140
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049140
    reference: chr 19
allele count: 2
allele frequency: 1.69857150136735e-5
allele num: 117746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+638G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+22G>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-19049142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049142
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049142
    reference: chr 19
allele count: 3
allele frequency: 2.5435368728062e-5
allele num: 117946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+20G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+636G>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-19049144-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049144
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049144
    reference: chr 19
allele count: 3
allele frequency: 2.538371719154553e-5
allele num: 118186
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+18G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+634G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

19-19049147-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049147
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049147
    reference: chr 19
allele count: 1
allele frequency: 8.43497477942541e-6
allele num: 118554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+15G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+631G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-19049148-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049148
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049148
    reference: chr 19
allele count: 1
allele frequency: 8.428718329090879e-6
allele num: 118642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+14G>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+630G>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

19-19049148-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049148
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049148
    reference: chr 19
allele count: 1
allele frequency: 8.428718329090879e-6
allele num: 118642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+14G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+630G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-19049151-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049151
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049151
    reference: chr 19
allele count: 1
allele frequency: 8.405197774303629e-6
allele num: 118974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+627T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+11T>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

19-19049152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049152
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049152
    reference: chr 19
allele count: 1
allele frequency: 8.398562166157153e-6
allele num: 119068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+626G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+10G>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-19049154-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049154
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049154
    reference: chr 19
allele count: 1
allele frequency: 8.382791804982731e-6
allele num: 119292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+624G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+8G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: c.303+8G>C
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-19049154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049154
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049154
    reference: chr 19
allele count: 5
allele frequency: 4.191395902491366e-5
allele num: 119292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+624G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+8G>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
hgvs: c.303+8G>A
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

19-19049155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049155
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049155
    reference: chr 19
allele count: 67
allele frequency: 5.605193588327812e-4
allele num: 119532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+623C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+7C>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 8.75e1
  variant carriers: 0
hgvs: c.303+7C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-19049156-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049156
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049156
    reference: chr 19
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+622C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.303+6C>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
hgvs: c.303+6C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-19049172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049172
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049172
    reference: chr 19
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.293A>G
  hgvsp: ENSP00000396154.2:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.293A>G
  hgvsp: ENSP00000376162.2:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.293A>G
  hgvsp: ENSP00000446026.1:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+606A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.293A>G
  hgvsp: ENSP00000470659.1:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.293A>G
  hgvsp: ENSP00000472815.1:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.293A>G
  hgvsp: ENSP00000471835.1:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.293A>G
  hgvsp: ENSP00000221222.11:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.293A>G
  hgvsp: ENSP00000439937.1:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.293A>G
  hgvsp: ENSP00000348150.6:p.His98Arg
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His98Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-19049180-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049180
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049180
    reference: chr 19
allele count: 11
allele frequency: 9.093915343915344e-5
allele num: 120960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.285T>G
  hgvsp: ENST00000221222.11:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.285T>G
  hgvsp: ENST00000392351.3:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.285T>G
  hgvsp: ENST00000542541.2:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.285T>G
  hgvsp: ENST00000600077.1:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.285T>G
  hgvsp: ENST00000355887.6:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.285T>G
  hgvsp: ENST00000539827.1:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.285T>G
  hgvsp: ENST00000433218.2:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.285T>G
  hgvsp: ENST00000596482.1:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+598T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.285T>G
  hgvsp: ENST00000594439.1:c.285T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser95Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

19-19049181-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049181
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049181
    reference: chr 19
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.284C>G
  hgvsp: ENSP00000221222.11:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.284C>G
  hgvsp: ENSP00000446026.1:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.284C>G
  hgvsp: ENSP00000472815.1:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.284C>G
  hgvsp: ENSP00000348150.6:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.284C>G
  hgvsp: ENSP00000396154.2:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.284C>G
  hgvsp: ENSP00000376162.2:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+597C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.284C>G
  hgvsp: ENSP00000471835.1:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.284C>G
  hgvsp: ENSP00000470659.1:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.284C>G
  hgvsp: ENSP00000439937.1:p.Ser95Cys
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser95Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-19049182-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049182
    reference: chr 19
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.283T>G
  hgvsp: ENSP00000439937.1:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.283T>G
  hgvsp: ENSP00000348150.6:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.283T>G
  hgvsp: ENSP00000472815.1:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.283T>G
  hgvsp: ENSP00000446026.1:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+596T>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.283T>G
  hgvsp: ENSP00000221222.11:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.283T>G
  hgvsp: ENSP00000376162.2:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.283T>G
  hgvsp: ENSP00000470659.1:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.283T>G
  hgvsp: ENSP00000471835.1:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.283T>G
  hgvsp: ENSP00000396154.2:p.Ser95Ala
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser95Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

19-19049182-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049182
    reference: chr 19
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.283T>A
  hgvsp: ENSP00000439937.1:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.283T>A
  hgvsp: ENSP00000446026.1:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.283T>A
  hgvsp: ENSP00000396154.2:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.283T>A
  hgvsp: ENSP00000472815.1:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.283T>A
  hgvsp: ENSP00000376162.2:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.283T>A
  hgvsp: ENSP00000471835.1:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+596T>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.283T>A
  hgvsp: ENSP00000221222.11:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.283T>A
  hgvsp: ENSP00000348150.6:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.283T>A
  hgvsp: ENSP00000470659.1:p.Ser95Thr
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser95Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

19-19049183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049183
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049183
    reference: chr 19
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.282C>T
  hgvsp: ENST00000355887.6:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.282C>T
  hgvsp: ENST00000433218.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.282C>T
  hgvsp: ENST00000539827.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.282C>T
  hgvsp: ENST00000542541.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+595C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.282C>T
  hgvsp: ENST00000221222.11:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.282C>T
  hgvsp: ENST00000596482.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.282C>T
  hgvsp: ENST00000392351.3:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.282C>T
  hgvsp: ENST00000594439.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.282C>T
  hgvsp: ENST00000600077.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala94Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-19049185-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049185
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049185
    reference: chr 19
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.280G>C
  hgvsp: ENSP00000470659.1:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.280G>C
  hgvsp: ENSP00000396154.2:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.280G>C
  hgvsp: ENSP00000376162.2:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.280G>C
  hgvsp: ENSP00000439937.1:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.280G>C
  hgvsp: ENSP00000348150.6:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.280G>C
  hgvsp: ENSP00000221222.11:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.280G>C
  hgvsp: ENSP00000471835.1:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.280G>C
  hgvsp: ENSP00000446026.1:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.280G>C
  hgvsp: ENSP00000472815.1:p.Ala94Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+593G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala94Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-19049193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049193
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049193
    reference: chr 19
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.272T>C
  hgvsp: ENSP00000472815.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.272T>C
  hgvsp: ENSP00000446026.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.272T>C
  hgvsp: ENSP00000376162.2:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.272T>C
  hgvsp: ENSP00000471835.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.272T>C
  hgvsp: ENSP00000221222.11:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.272T>C
  hgvsp: ENSP00000439937.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.272T>C
  hgvsp: ENSP00000348150.6:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.272T>C
  hgvsp: ENSP00000396154.2:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.272T>C
  hgvsp: ENSP00000470659.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+585T>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu91Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-19049194-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049194
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049194
    reference: chr 19
allele count: 14589
allele frequency: 1.203613563237357e-1
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.271C>T
  hgvsp: ENST00000355887.6:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.271C>T
  hgvsp: ENST00000221222.11:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+584C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.271C>T
  hgvsp: ENST00000596482.1:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.271C>T
  hgvsp: ENST00000433218.2:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.271C>T
  hgvsp: ENST00000539827.1:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.271C>T
  hgvsp: ENST00000392351.3:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.271C>T
  hgvsp: ENST00000542541.2:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.271C>T
  hgvsp: ENST00000600077.1:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.271C>T
  hgvsp: ENST00000594439.1:c.271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 4.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 3.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 4.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 9.25e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 6.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 5.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 8.75e1
  variant carriers: 531
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 3.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 7.75e1
  variant carriers: 380
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 6.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 8.25e1
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 7.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 9.75e1
  variant carriers: 9365
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Leu91Leu
num of homozygotes: 1019
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-19049197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049197
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049197
    reference: chr 19
allele count: 3
allele frequency: 2.474104374216534e-5
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.268G>A
  hgvsp: ENSP00000396154.2:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.268G>A
  hgvsp: ENSP00000221222.11:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.268G>A
  hgvsp: ENSP00000348150.6:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+581G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.268G>A
  hgvsp: ENSP00000472815.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.268G>A
  hgvsp: ENSP00000470659.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.268G>A
  hgvsp: ENSP00000446026.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.268G>A
  hgvsp: ENSP00000471835.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.268G>A
  hgvsp: ENSP00000376162.2:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.268G>A
  hgvsp: ENSP00000439937.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly90Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-19049198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049198
    reference: chr 19
allele count: 46797
allele frequency: 3.856620131529067e-1
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.267C>T
  hgvsp: ENST00000596482.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.267C>T
  hgvsp: ENST00000542541.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+580C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.267C>T
  hgvsp: ENST00000433218.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.267C>T
  hgvsp: ENST00000355887.6:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.267C>T
  hgvsp: ENST00000539827.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.267C>T
  hgvsp: ENST00000221222.11:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.267C>T
  hgvsp: ENST00000392351.3:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.267C>T
  hgvsp: ENST00000594439.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.267C>T
  hgvsp: ENST00000600077.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.555C>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 27767
  bin: 9.75e1
  variant carriers: 26374
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 6.75e1
  variant carriers: 710
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 5.25e1
  variant carriers: 647
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 1285
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 4.75e1
  variant carriers: 594
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 483
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 7.75e1
  variant carriers: 962
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 6.25e1
  variant carriers: 601
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.25e1
  variant carriers: 592
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 8.25e1
  variant carriers: 1094
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.25e1
  variant carriers: 1440
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 782
genotype quality: GenotypeQuality
hgvs: p.Tyr89Tyr
num of homozygotes: 9859
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

19-19049202-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049202
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049202
    reference: chr 19
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.263T>C
  hgvsp: ENSP00000439937.1:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.551T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.263T>C
  hgvsp: ENSP00000446026.1:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.263T>C
  hgvsp: ENSP00000472815.1:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.263T>C
  hgvsp: ENSP00000396154.2:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.263T>C
  hgvsp: ENSP00000221222.11:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.263T>C
  hgvsp: ENSP00000376162.2:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.263T>C
  hgvsp: ENSP00000348150.6:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.263T>C
  hgvsp: ENSP00000471835.1:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+576T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.263T>C
  hgvsp: ENSP00000470659.1:p.Val88Ala
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val88Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-19049207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049207
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049207
    reference: chr 19
allele count: 6
allele frequency: 4.943968358602505e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.258C>T
  hgvsp: ENST00000221222.11:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.258C>T
  hgvsp: ENST00000433218.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.258C>T
  hgvsp: ENST00000355887.6:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.258C>T
  hgvsp: ENST00000596482.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.258C>T
  hgvsp: ENST00000539827.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+571C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.258C>T
  hgvsp: ENST00000392351.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.258C>T
  hgvsp: ENST00000594439.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.258C>T
  hgvsp: ENST00000542541.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.546C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.258C>T
  hgvsp: ENST00000600077.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn86Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-19049212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049212
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049212
    reference: chr 19
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.253G>A
  hgvsp: ENSP00000221222.11:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.253G>A
  hgvsp: ENSP00000396154.2:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.541G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.253G>A
  hgvsp: ENSP00000376162.2:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.253G>A
  hgvsp: ENSP00000470659.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.253G>A
  hgvsp: ENSP00000439937.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.253G>A
  hgvsp: ENSP00000446026.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.253G>A
  hgvsp: ENSP00000472815.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.253G>A
  hgvsp: ENSP00000348150.6:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+566G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.253G>A
  hgvsp: ENSP00000472800.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.253G>A
  hgvsp: ENSP00000471835.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala85Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

19-19049213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049213
    reference: chr 19
allele count: 6
allele frequency: 4.943723942455053e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.252C>T
  hgvsp: ENST00000542541.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.252C>T
  hgvsp: ENST00000539827.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.252C>T
  hgvsp: ENST00000594439.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.252C>T
  hgvsp: ENST00000221222.11:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.252C>T
  hgvsp: ENST00000599097.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.252C>T
  hgvsp: ENST00000355887.6:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.252C>T
  hgvsp: ENST00000392351.3:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.252C>T
  hgvsp: ENST00000596482.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.252C>T
  hgvsp: ENST00000600077.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.540C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+565C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.252C>T
  hgvsp: ENST00000433218.2:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg84Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-19049214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049214
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049214
    reference: chr 19
allele count: 35
allele frequency: 2.883838966432115e-4
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+564G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.539G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.251G>A
  hgvsp: ENSP00000472800.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.251G>A
  hgvsp: ENSP00000396154.2:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.251G>A
  hgvsp: ENSP00000446026.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.251G>A
  hgvsp: ENSP00000472815.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.251G>A
  hgvsp: ENSP00000348150.6:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.251G>A
  hgvsp: ENSP00000376162.2:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.251G>A
  hgvsp: ENSP00000439937.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.251G>A
  hgvsp: ENSP00000471835.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.251G>A
  hgvsp: ENSP00000470659.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.251G>A
  hgvsp: ENSP00000221222.11:p.Arg84His
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg84His
num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-19049215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049215
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.250C>T
  hgvsp: ENSP00000376162.2:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+563C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.538C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.250C>T
  hgvsp: ENSP00000396154.2:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.250C>T
  hgvsp: ENSP00000221222.11:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.250C>T
  hgvsp: ENSP00000472800.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.250C>T
  hgvsp: ENSP00000472815.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.250C>T
  hgvsp: ENSP00000348150.6:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.250C>T
  hgvsp: ENSP00000470659.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.250C>T
  hgvsp: ENSP00000446026.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.250C>T
  hgvsp: ENSP00000471835.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.250C>T
  hgvsp: ENSP00000439937.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg84Cys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

19-19049221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049221
    reference: chr 19
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.244G>A
  hgvsp: ENSP00000446026.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+557G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.244G>A
  hgvsp: ENSP00000348150.6:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.244G>A
  hgvsp: ENSP00000396154.2:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.244G>A
  hgvsp: ENSP00000376162.2:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.244G>A
  hgvsp: ENSP00000221222.11:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.244G>A
  hgvsp: ENSP00000472815.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.244G>A
  hgvsp: ENSP00000472800.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.532G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.244G>A
  hgvsp: ENSP00000471835.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.244G>A
  hgvsp: ENSP00000439937.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.244G>A
  hgvsp: ENSP00000470659.1:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp82Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-19049222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049222
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049222
    reference: chr 19
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.531C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.243C>T
  hgvsp: ENST00000594439.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.243C>T
  hgvsp: ENST00000221222.11:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.243C>T
  hgvsp: ENST00000542541.2:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.243C>T
  hgvsp: ENST00000355887.6:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.243C>T
  hgvsp: ENST00000433218.2:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.243C>T
  hgvsp: ENST00000392351.3:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.243C>T
  hgvsp: ENST00000596482.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.243C>T
  hgvsp: ENST00000599097.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.243C>T
  hgvsp: ENST00000600077.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.243C>T
  hgvsp: ENST00000539827.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+556C>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala81Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

19-19049228-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049228
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049228
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.237G>C
  hgvsp: ENSP00000471835.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.237G>C
  hgvsp: ENSP00000221222.11:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+550G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.237G>C
  hgvsp: ENSP00000439937.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.237G>C
  hgvsp: ENSP00000446026.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.237G>C
  hgvsp: ENSP00000472815.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.237G>C
  hgvsp: ENSP00000396154.2:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.237G>C
  hgvsp: ENSP00000470659.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.237G>C
  hgvsp: ENSP00000376162.2:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.237G>C
  hgvsp: ENSP00000348150.6:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.525G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.237G>C
  hgvsp: ENSP00000472800.1:p.Gln79His
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln79His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-19049233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049233
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049233
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.232G>A
  hgvsp: ENSP00000470659.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.232G>A
  hgvsp: ENSP00000348150.6:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.232G>A
  hgvsp: ENSP00000439937.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.232G>A
  hgvsp: ENSP00000221222.11:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.232G>A
  hgvsp: ENSP00000396154.2:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.232G>A
  hgvsp: ENSP00000376162.2:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.232G>A
  hgvsp: ENSP00000446026.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.232G>A
  hgvsp: ENSP00000472815.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.232G>A
  hgvsp: ENSP00000471835.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+545G>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.232G>A
  hgvsp: ENSP00000472800.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.520G>A
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly78Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

19-19049234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049234
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049234
    reference: chr 19
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.519C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.231C>T
  hgvsp: ENST00000355887.6:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.231C>T
  hgvsp: ENST00000433218.2:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.231C>T
  hgvsp: ENST00000600077.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.231C>T
  hgvsp: ENST00000392351.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.231C>T
  hgvsp: ENST00000596482.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.231C>T
  hgvsp: ENST00000599097.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.231C>T
  hgvsp: ENST00000542541.2:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.231C>T
  hgvsp: ENST00000221222.11:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+544C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.231C>T
  hgvsp: ENST00000594439.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.231C>T
  hgvsp: ENST00000539827.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe77Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-19049234-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049234
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049234
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.231C>A
  hgvsp: ENSP00000472800.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.231C>A
  hgvsp: ENSP00000221222.11:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.231C>A
  hgvsp: ENSP00000471835.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.231C>A
  hgvsp: ENSP00000470659.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.231C>A
  hgvsp: ENSP00000446026.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.519C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.231C>A
  hgvsp: ENSP00000376162.2:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.231C>A
  hgvsp: ENSP00000472815.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.231C>A
  hgvsp: ENSP00000348150.6:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+544C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.231C>A
  hgvsp: ENSP00000439937.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.231C>A
  hgvsp: ENSP00000396154.2:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe77Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

19-19049238-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049238
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049238
    reference: chr 19
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.227A>T
  hgvsp: ENSP00000472815.1:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.227A>T
  hgvsp: ENSP00000470659.1:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.227A>T
  hgvsp: ENSP00000376162.2:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.227A>T
  hgvsp: ENSP00000221222.11:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.227A>T
  hgvsp: ENSP00000348150.6:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.227A>T
  hgvsp: ENSP00000439937.1:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.227A>T
  hgvsp: ENSP00000472800.1:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+540A>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.227A>T
  hgvsp: ENSP00000471835.1:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.227A>T
  hgvsp: ENSP00000396154.2:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.515A>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.227A>T
  hgvsp: ENSP00000446026.1:p.Lys76Met
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys76Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-19049283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049283
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049283
    reference: chr 19
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.182A>G
  hgvsp: ENSP00000348150.6:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.470A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.182A>G
  hgvsp: ENSP00000446026.1:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.182A>G
  hgvsp: ENSP00000471835.1:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+495A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.182A>G
  hgvsp: ENSP00000472815.1:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.182A>G
  hgvsp: ENSP00000472800.1:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.182A>G
  hgvsp: ENSP00000221222.11:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.182A>G
  hgvsp: ENSP00000439937.1:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.182A>G
  hgvsp: ENSP00000376162.2:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.182A>G
  hgvsp: ENSP00000470659.1:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.182A>G
  hgvsp: ENSP00000396154.2:p.Asn61Ser
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn61Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

19-19049290-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049290
    reference: chr 19
allele count: 1
allele frequency: 8.268973158913126e-6
allele num: 120934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.175A>G
  hgvsp: ENSP00000221222.11:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.175A>G
  hgvsp: ENSP00000376162.2:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.175A>G
  hgvsp: ENSP00000471835.1:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.175A>G
  hgvsp: ENSP00000348150.6:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.175A>G
  hgvsp: ENSP00000446026.1:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.175A>G
  hgvsp: ENSP00000472800.1:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.175A>G
  hgvsp: ENSP00000396154.2:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.175A>G
  hgvsp: ENSP00000472815.1:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.175A>G
  hgvsp: ENSP00000470659.1:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.175A>G
  hgvsp: ENSP00000439937.1:p.Ile59Val
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+488A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.463A>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile59Val
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-19049297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049297
    reference: chr 19
allele count: 25
allele frequency: 2.071422653078134e-4
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+481C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.172-4C>T
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.456C>T
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.172-4C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-19049297-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049297
    reference: chr 19
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.172-4C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.456C>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+481C>G
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.172-4C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-19049301-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049301
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049301
    reference: chr 19
allele count: 2
allele frequency: 1.658512314453935e-5
allele num: 120590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.452G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+477G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.172-8G>C
  variant of: http://identifiers.org/hgnc/17514
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.172-8G>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

19-19049304-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049304
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049304
    reference: chr 19
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.449C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+474C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.172-11C>A
  variant of: http://identifiers.org/hgnc/17514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-19049321-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049321
    reference: chr 19
allele count: 1
allele frequency: 8.320436656515735e-6
allele num: 120186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.432T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+457T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.172-28T>C
  variant of: http://identifiers.org/hgnc/17514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-19049324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19049324
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19049324
    reference: chr 19
allele count: 9
allele frequency: 7.488642225957298e-5
allele num: 120182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000471835
  ensembl transcript: ENST00000594439
  gene symbol: HOMER3
  hgvsc: ENST00000594439.1:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000376162
  ensembl transcript: ENST00000392351
  gene symbol: HOMER3
  hgvsc: ENST00000392351.3:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000221222
  ensembl transcript: ENST00000221222
  gene symbol: HOMER3
  hgvsc: ENST00000221222.11:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472815
  ensembl transcript: ENST00000596482
  gene symbol: HOMER3
  hgvsc: ENST00000596482.1:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051128
  ensembl transcript: ENST00000599808
  gene symbol: HOMER3
  hgvsc: ENST00000599808.1:n.429A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000472800
  ensembl transcript: ENST00000599097
  gene symbol: HOMER3
  hgvsc: ENST00000599097.1:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000439937
  ensembl transcript: ENST00000539827
  gene symbol: HOMER3
  hgvsc: ENST00000539827.1:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000396154
  ensembl transcript: ENST00000433218
  gene symbol: HOMER3
  hgvsc: ENST00000433218.2:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000348150
  ensembl transcript: ENST00000355887
  gene symbol: HOMER3
  hgvsc: ENST00000355887.6:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000469800
  ensembl transcript: ENST00000594794
  gene symbol: HOMER3
  hgvsc: ENST00000594794.1:c.14+454A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000446026
  ensembl transcript: ENST00000542541
  gene symbol: HOMER3
  hgvsc: ENST00000542541.2:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051128
  ensembl protein: ENSP00000470659
  ensembl transcript: ENST00000600077
  gene symbol: HOMER3
  hgvsc: ENST00000600077.1:c.172-31A>G
  variant of: http://identifiers.org/hgnc/17514
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

GenotypeQuality
all individuals: 15293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.401075681905494e-5
allele num: 41648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 4.092e0

VQSLOD
type: SiteQuality
SIO_000300: -1.253e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 8.59573e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 1.962e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.531678641410843e-4
allele num: 6124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.092145949288807e-4
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.30099e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 1.567e0

VQSLOD
type: SiteQuality
SIO_000300: -1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 8.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-1

GenotypeQuality
all individuals: 299
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35713
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.355704697986577e-4
allele num: 2980
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -2.918e0

QD
type: SiteQuality
SIO_000300: 4.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

DP
type: SiteQuality
SIO_000300: 8.29975e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.008e0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2749
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36093
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13309
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.343566908835247e-4
allele num: 8534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 2.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.28082e5

FS
type: SiteQuality
SIO_000300: 1.1204e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38002
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.556178026766262e-4
allele num: 6426
num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -1.12e-2

VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.677302146020211e-5
allele num: 35228
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.275e1

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele frequency: 4.108463434675431e-4
allele num: 2434
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.85459940652819e-4
allele num: 5392
num of homozygotes: 0

African
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allele frequency: 3.303600925008259e-4
allele num: 6054
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6828
num of homozygotes: 0

European (Non-Finnish)
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allele count: 78
allele frequency: 2.265071436868393e-3
allele num: 34436
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
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QD
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.265e0

MQRankSum
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SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

FS
type: SiteQuality
SIO_000300: 7.782e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 5.66e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.196836555360281e-4
allele num: 4552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
type: SiteQuality
SIO_000300: 3.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-1

DP
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QD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 356
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East Asian
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allele frequency: 2.311604253351826e-4
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European (Non-Finnish)
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allele frequency: 6.870019236053861e-5
allele num: 29112
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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South Asian
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InbreedingCoeff
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QD
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FS
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 3.711952487008166e-4
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Other
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South Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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DP
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.087e1

VQSLOD
type: SiteQuality
SIO_000300: -5.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 6.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.82423e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.03e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529800514012973e-5
allele num: 65368
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.279972e6

QD
type: SiteQuality
SIO_000300: 1.632e1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 3.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e0

GenotypeQuality
all individuals: 272
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528818223513224e-5
allele num: 65410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.272e0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.809e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

DP
type: SiteQuality
SIO_000300: 3.284117e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 594
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variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 852
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528397627926881e-5
allele num: 65428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.995e-1

FS
type: SiteQuality
SIO_000300: 9.458e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.671e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.618e1

DP
type: SiteQuality
SIO_000300: 3.287769e6

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 854
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1372
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 852
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 48161
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-5
allele num: 65460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.325e1

FS
type: SiteQuality
SIO_000300: 2.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.483e0

DP
type: SiteQuality
SIO_000300: 3.29074e6

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeQuality
all individuals: 845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 1118
bin: 8.25e1
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GenotypeQuality
all individuals: 852
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
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GenotypeQuality
all individuals: 1372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
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GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 1998
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GenotypeQuality
all individuals: 548
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GenotypeQuality
all individuals: 1010
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.582951420714941e-5
allele num: 65460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.483e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

DP
type: SiteQuality
SIO_000300: 3.29074e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 2.187e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
all individuals: 1954
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 172
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 48474
bin: 9.75e1
variant carriers: 753

East Asian
type: Population
allele count: 46
allele frequency: 5.325306783977773e-3
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.220852154804053e-4
allele num: 65528
num of homozygotes: 0

South Asian
type: Population
allele count: 726
allele frequency: 5.384159003263127e-2
allele num: 13484
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.787037037037037e-3
allele num: 864
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.302381e6

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

GenotypeQuality
all individuals: 914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
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GenotypeQuality
all individuals: 1979
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 765
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GenotypeQuality
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GenotypeQuality
all individuals: 1383
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GenotypeQuality
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 1020
bin: 7.75e1
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 48187
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52597204419215e-5
allele num: 65532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

FS
type: SiteQuality
SIO_000300: 1.444e0

DP
type: SiteQuality
SIO_000300: 3.300008e6

MQ
type: SiteQuality
SIO_000300: 5.601e1

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525041176111755e-5
allele num: 65572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 6.223e0

QD
type: SiteQuality
SIO_000300: 1.604e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e0

DP
type: SiteQuality
SIO_000300: 3.302258e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.132845825716027e-4
allele num: 65640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.053e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

FS
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 3.31971e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
all individuals: 656
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48337
bin: 9.75e1
variant carriers: 530

South Asian
type: Population
allele count: 1
allele frequency: 7.236937328122738e-5
allele num: 13818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.140767824497258e-5
allele num: 65640
num of homozygotes: 0

African
type: Population
allele count: 510
allele frequency: 4.921829762594094e-2
allele num: 10362
num of homozygotes: 16

Latino
type: Population
allele count: 28
allele frequency: 2.425502425502425e-3
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

DP
type: SiteQuality
SIO_000300: 3.31971e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.053e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1767
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.077e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 3.318802e6

FS
type: SiteQuality
SIO_000300: 6.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.291e0

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1018
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GenotypeQuality
all individuals: 312
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.560102146288077e-5
allele num: 65788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

DP
type: SiteQuality
SIO_000300: 3.32137e6

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.545e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.239e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48260
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037113527303651e-5
allele num: 65852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 3.32465e6

FS
type: SiteQuality
SIO_000300: 3.029e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 869
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.3291e6

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.378e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.063e1

FS
type: SiteQuality
SIO_000300: 1.222e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 1082
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65974
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 2.766e0

DP
type: SiteQuality
SIO_000300: 3.330467e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 2968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
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GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 1439
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variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 48262
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 2.766e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.037e1

DP
type: SiteQuality
SIO_000300: 3.330467e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48256
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3234
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.742179072276159e-5
allele num: 14832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 3.335282e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 3.337084e6

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.042e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.184e0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512218727316719e-5
allele num: 66128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.225e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 3.341345e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 3533
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 762
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 1108
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 1385
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GenotypeQuality
all individuals: 103
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 48276
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.991767361572168e-4
allele num: 15062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 3.341345e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

FS
type: SiteQuality
SIO_000300: 1.225e0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 1206
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48305
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variant carriers: 65

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 110
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1384
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GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 11
allele frequency: 9.508990318118949e-4
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.797172376291463e-4
allele num: 66204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.62278675904542e-4
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.332e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.345854e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.98e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 87
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.129e0

DP
type: SiteQuality
SIO_000300: 3.346987e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.449e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.535e0

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48310
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.234413965087281e-5
allele num: 16040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

FS
type: SiteQuality
SIO_000300: 2.071e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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SIO_000300: 1.62e0

ClippingRankSum
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SIO_000300: -1.061e0

DP
type: SiteQuality
SIO_000300: 3.364265e6

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48328
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.502223290469895e-4
allele num: 66568
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

DP
type: SiteQuality
SIO_000300: 3.369476e6

FS
type: SiteQuality
SIO_000300: 2.559e0

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.478e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 3.369708e6

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 2.208e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
all individuals: 48328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.468e0

DP
type: SiteQuality
SIO_000300: 3.370187e6

QD
type: SiteQuality
SIO_000300: 1.107e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 3.370187e6

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.468e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.107e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 864
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variant carriers: 0

GenotypeQuality
all individuals: 4676
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 1434
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variant carriers: 0

GenotypeQuality
all individuals: 921
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variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.703e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: -6.868e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.905e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 3.370549e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1457
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48337
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.371665e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

QD
type: SiteQuality
SIO_000300: 1.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.684e-1

FS
type: SiteQuality
SIO_000300: 7.025e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

GenotypeQuality
all individuals: 891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 1320
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 2.3883e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.375287e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.29e0

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.75e1
variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50785
bin: 9.75e1
variant carriers: 13537

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1130
bin: 9.25e1
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GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 702
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variant carriers: 2

GenotypeQuality
all individuals: 1165
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3895
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.75e1
variant carriers: 2

East Asian
type: Population
allele count: 471
allele frequency: 5.44382801664355e-2
allele num: 8652
num of homozygotes: 11

Other
type: Population
allele count: 152
allele frequency: 1.677704194260486e-1
allele num: 906
num of homozygotes: 9

African
type: Population
allele count: 305
allele frequency: 2.931564782775855e-2
allele num: 10404
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 10267
allele frequency: 1.540435108777194e-1
allele num: 66650
num of homozygotes: 767

Latino
type: Population
allele count: 1011
allele frequency: 8.735095904613789e-2
allele num: 11574
num of homozygotes: 59

European (Finnish)
type: Population
allele count: 1249
allele frequency: 1.891278013325257e-1
allele num: 6604
num of homozygotes: 116

South Asian
type: Population
allele count: 1134
allele frequency: 6.906211936662607e-2
allele num: 16420
num of homozygotes: 52

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

DP
type: SiteQuality
SIO_000300: 4.193162e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.09e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

FS
type: SiteQuality
SIO_000300: 1.744e0

QD
type: SiteQuality
SIO_000300: 1.469e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49467
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 860
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

FS
type: SiteQuality
SIO_000300: 1.097e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

DP
type: SiteQuality
SIO_000300: 3.799079e6

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

GenotypeDepth
all individuals: 3011
bin: 5.75e1
variant carriers: 619

GenotypeQuality
all individuals: 2249
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 6.75e1
variant carriers: 16

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 518
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 31

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 55121
bin: 9.75e1
variant carriers: 36760

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 37

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 15

Other
type: Population
allele count: 343
allele frequency: 3.777533039647577e-1
allele num: 908
num of homozygotes: 59

South Asian
type: Population
allele count: 5490
allele frequency: 3.328483084758094e-1
allele num: 16494
num of homozygotes: 977

African
type: Population
allele count: 1509
allele frequency: 1.45040369088812e-1
allele num: 10404
num of homozygotes: 94

European (Non-Finnish)
type: Population
allele count: 28968
allele frequency: 4.342507645259939e-1
allele num: 66708
num of homozygotes: 6324

Latino
type: Population
allele count: 6377
allele frequency: 5.511668107173725e-1
allele num: 11570
num of homozygotes: 1748

East Asian
type: Population
allele count: 1604
allele frequency: 1.855193152903077e-1
allele num: 8646
num of homozygotes: 154

European (Finnish)
type: Population
allele count: 2506
allele frequency: 3.790078644888082e-1
allele num: 6612
num of homozygotes: 503

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.751955e6

QD
type: SiteQuality
SIO_000300: 1.886e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.66e-2

FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

GenotypeDepth
all individuals: 5962
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.569e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 3.697064e6

FS
type: SiteQuality
SIO_000300: 9.781000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

QD
type: SiteQuality
SIO_000300: 1.118e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeDepth
all individuals: 3015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48442
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 1.359e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

DP
type: SiteQuality
SIO_000300: 3.697136e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 2.462e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.222e0

GenotypeDepth
all individuals: 3011
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6047
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 5099
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1446
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48441
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 6.078e0

QD
type: SiteQuality
SIO_000300: 1.284e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.696878e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

GenotypeDepth
all individuals: 5963
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3010
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1767
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1700
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48439
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1450
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 3.696768e6

FS
type: SiteQuality
SIO_000300: 2.471e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeDepth
all individuals: 3015
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5562
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 34
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 5114
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 1444
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 8.25e1
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GenotypeQuality
all individuals: 651
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GenotypeQuality
all individuals: 1700
bin: 9.25e1
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GenotypeQuality
all individuals: 48449
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

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allele frequency: 2.060356320446007e-3
allele num: 16502
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Other
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allele frequency: 0.0e0
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East Asian
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele frequency: 9.611687812379854e-5
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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African
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Other
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

African
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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Latino
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East Asian
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South Asian
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QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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South Asian
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East Asian
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European (Finnish)
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Latino
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African
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele num: 10404
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European (Finnish)
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num of homozygotes: 0

South Asian
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Other
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East Asian
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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Other
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African
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South Asian
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DP
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66574
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DP
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 8.090614886731392e-4
allele num: 8652
num of homozygotes: 0

African
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allele frequency: 6.728181468665898e-4
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European (Non-Finnish)
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allele num: 66516
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South Asian
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Other
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Latino
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66516
num of homozygotes: 0

African
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Other
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East Asian
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South Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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DP
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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Other
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East Asian
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European (Non-Finnish)
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.2758880381574e-5
allele num: 15934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

DP
type: SiteQuality
SIO_000300: 3.6649e6

GenotypeDepth
all individuals: 1324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48400
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50665943470138e-5
allele num: 66372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.347e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.642636e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeDepth
all individuals: 1322
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48401
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.777393708952644e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.554e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

DP
type: SiteQuality
SIO_000300: 3.642231e6