17-55335670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335670
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335670
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.213A>G
  hgvsp: ENST00000579590.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.225A>G
  hgvsp: ENST00000284073.2:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.159A>G
  hgvsp: ENST00000416426.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.194A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.219A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.213A>G
  hgvsp: ENST00000322684.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.225A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.225A>G
  hgvsp: ENST00000581776.1:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.137A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val75Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

17-55335677-GTAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335677
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335674
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.235_237delTTA
  hgvsp: ENSP00000463227.1:p.Leu79del
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.147_149delTTA
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.223_225delTTA
  hgvsp: ENSP00000313616.3:p.Leu75del
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.223_225delTTA
  hgvsp: ENSP00000462914.1:p.Leu75del
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.204_206delTTA
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.235_237delTTA
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.235_237delTTA
  hgvsp: ENSP00000284073.2:p.Leu79del
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.169_171delTTA
  hgvsp: ENSP00000414671.2:p.Leu57del
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.229_231delTTA
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu79del
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: GTAT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

17-55335679-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335679
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335679
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.222A>T
  hgvsp: ENST00000322684.3:c.222A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.228A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.234A>T
  hgvsp: ENST00000581776.1:c.234A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.234A>T
  hgvsp: ENST00000284073.2:c.234A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.168A>T
  hgvsp: ENST00000416426.2:c.168A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.222A>T
  hgvsp: ENST00000579590.1:c.222A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.146A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.203A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.234A>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val78Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

17-55335682-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335682
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335682
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.231A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.237A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.149A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.225A>G
  hgvsp: ENST00000322684.3:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.171A>G
  hgvsp: ENST00000416426.2:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.225A>G
  hgvsp: ENST00000579590.1:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.237A>G
  hgvsp: ENST00000284073.2:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.237A>G
  hgvsp: ENST00000581776.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.206A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu79Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/17-55335689-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335689
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335689
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.244C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.213C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.232C>A
  hgvsp: ENSP00000462914.1:p.Pro78Thr
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.232C>A
  hgvsp: ENSP00000313616.3:p.Pro78Thr
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.156C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.178C>A
  hgvsp: ENSP00000414671.2:p.Pro60Thr
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.244C>A
  hgvsp: ENSP00000284073.2:p.Pro82Thr
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.238C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.244C>A
  hgvsp: ENSP00000463227.1:p.Pro82Thr
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro82Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-55335714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335714
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335714
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.203C>T
  hgvsp: ENSP00000414671.2:p.Thr68Met
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.269C>T
  hgvsp: ENSP00000284073.2:p.Thr90Met
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.257C>T
  hgvsp: ENSP00000462914.1:p.Thr86Met
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.269C>T
  hgvsp: ENSP00000463227.1:p.Thr90Met
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.269C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.257C>T
  hgvsp: ENSP00000313616.3:p.Thr86Met
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.263C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.181C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.238C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr90Met
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-55335727-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335727
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335724
    reference: chr 17
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+24_270+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+24_204+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+24_270+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+24_258+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+24_182+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+24_264+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+24_239+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+24_258+26delGTT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+24_270+26delGTT
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: TTTG
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-55335733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335733
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335733
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+18G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+18G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

17-55335733-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335733
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335733
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+18G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+18G>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-55335734-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335734
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335734
    reference: chr 17
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+19T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+19T>A
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-55335742-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335742
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+27C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+27C>A
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-55335745-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335745
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335745
    reference: chr 17
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+30C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+30C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-55335753-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335753
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335753
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+38A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+38A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

17-55335758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335758
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335758
    reference: chr 17
allele count: 35
allele frequency: 2.883648886911529e-4
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+43C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+43C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-55335759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335759
    reference: chr 17
allele count: 23
allele frequency: 1.894875597297743e-4
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+44G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+44G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-55335759-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55335759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55335759
    reference: chr 17
allele count: 62
allele frequency: 5.107925523150437e-4
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.270+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.270+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.270+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.258+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.182+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.258+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.239+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.264+44G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.204+44G>C
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-55339474-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339474
    reference: chr 17
allele count: 2
allele frequency: 1.65694591728526e-5
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-38T>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-38T>A
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/17-55339476-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339476
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339476
    reference: chr 17
allele count: 6
allele frequency: 4.969849579219402e-5
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-36C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.1C>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-36C>A
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

17-55339479-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339479
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339479
    reference: chr 17
allele count: 4
allele frequency: 3.312245371137094e-5
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.4T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-33T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-33T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-55339481-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339481
    reference: chr 17
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.6T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-31T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-31T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-55339484-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339484
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339484
    reference: chr 17
allele count: 1
allele frequency: 8.276638360563474e-6
allele num: 120822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.9A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-28A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-28A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32603
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

17-55339487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339487
    reference: chr 17
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.12C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-25C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-25C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-55339491-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339491
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339491
    reference: chr 17
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.16C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-21C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-21C>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

17-55339498-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339499
    reference: chr 17
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.31dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-6dupT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-6dupT
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-55339498-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339498
    reference: chr 17
allele count: 10
allele frequency: 8.2847295864263e-5
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.23A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-14A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-14A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-55339498-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339497
    reference: chr 17
allele count: 3
allele frequency: 2.48541887592789e-5
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.31delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-6delT
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-6delT
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AT
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-55339499-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339499
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339499
    reference: chr 17
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.240-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.205-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*49-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.259-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.271-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.259-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.24T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.183-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.271-13T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.265-13T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

17-55339543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339543
    reference: chr 17
allele count: 4
allele frequency: 3.30114714863415e-5
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.68C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.236C>T
  hgvsp: ENSP00000414671.2:p.Ala79Val
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.214C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.290C>T
  hgvsp: ENSP00000462914.1:p.Ala97Val
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.296C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.290C>T
  hgvsp: ENSP00000313616.3:p.Ala97Val
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.302C>T
  hgvsp: ENSP00000284073.2:p.Ala101Val
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.271C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*80C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.302C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala101Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-55339544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339544
    reference: chr 17
allele count: 3
allele frequency: 2.475982965237199e-5
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.272G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*81G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.303G>A
  hgvsp: ENST00000284073.2:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.69G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.291G>A
  hgvsp: ENST00000579590.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.297G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.215G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.303G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.291G>A
  hgvsp: ENST00000322684.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.237G>A
  hgvsp: ENST00000416426.2:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala101Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

17-55339564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339564
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339564
    reference: chr 17
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.235G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+11G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+11G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-55339566-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339566
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339566
    reference: chr 17
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.237A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+13A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+13A>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-55339568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339568
    reference: chr 17
allele count: 2
allele frequency: 1.650655310158133e-5
allele num: 121164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.239A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+15A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+15A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

17-55339569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339569
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339569
    reference: chr 17
allele count: 7
allele frequency: 5.777102865443021e-5
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.240A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+16A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+16A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

17-55339570-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339570
    reference: chr 17
allele count: 6
allele frequency: 4.951802456094018e-5
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.241A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+17A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+17A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

17-55339571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339571
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339571
    reference: chr 17
allele count: 3
allele frequency: 2.475982965237199e-5
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.242C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+18C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+18C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-55339572-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339572
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339572
    reference: chr 17
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.243A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+19A>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+19A>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

17-55339588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339588
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339588
    reference: chr 17
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+35T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.259T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+35T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

17-55339591-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339591
    reference: chr 17
allele count: 11
allele frequency: 9.080852609506827e-5
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.262G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+38G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+38G>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-55339594-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339594
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339594
    reference: chr 17
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.265A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+41A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+41A>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

17-55339596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339596
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339596
    reference: chr 17
allele count: 3
allele frequency: 2.477209671026556e-5
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.267G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+43G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+43G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-55339597-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339597
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339597
    reference: chr 17
allele count: 2
allele frequency: 1.651582215762701e-5
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.268A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+44A>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+44A>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD

17-55339604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339604
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339604
    reference: chr 17
allele count: 2
allele frequency: 1.652100645971353e-5
allele num: 121058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.275A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+51A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+51A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

17-55339605-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55339605
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55339605
    reference: chr 17
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579531
  gene symbol: MSI2
  hgvsc: ENST00000579531.1:n.306+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000584476
  gene symbol: MSI2
  hgvsc: ENST00000584476.1:n.276G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000579483
  gene symbol: MSI2
  hgvsc: ENST00000579483.1:n.78+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000581523
  gene symbol: MSI2
  hgvsc: ENST00000581523.1:n.312+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+52G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+52G>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-55363196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363196
    reference: chr 17
allele count: 40
allele frequency: 4.869734599464329e-3
allele num: 8214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23643A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23643A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23643A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23643A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23643A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23643A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-55363230-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363230
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363230
    reference: chr 17
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23677C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23677C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23677C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23677C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.-15C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23677C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23677C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-55363231-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363231
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363231
    reference: chr 17
allele count: 5
allele frequency: 5.719514985129262e-4
allele num: 8742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23678G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.-14G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23678G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23678G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23678G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23678G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23678G>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-55363250-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363250
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363250
    reference: chr 17
allele count: 1
allele frequency: 1.043187982474442e-4
allele num: 9586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23697G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23697G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23697G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.6G>C
  hgvsp: ENSP00000392607.2:p.Met2Ile
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23697G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23697G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23697G>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met2Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-55363266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363266
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363266
    reference: chr 17
allele count: 8
allele frequency: 7.704160246533128e-4
allele num: 10384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23713A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23713A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23713A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23713A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.22A>G
  hgvsp: ENSP00000392607.2:p.Lys8Glu
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23713A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23713A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys8Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

17-55363283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363283
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363283
    reference: chr 17
allele count: 1
allele frequency: 9.389671361502347e-5
allele num: 10650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23730G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23730G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.39G>A
  hgvsp: ENST00000442934.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23730G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23730G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23730G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23730G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr13Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-55363286-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363286
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363286
    reference: chr 17
allele count: 1
allele frequency: 9.373828271466067e-5
allele num: 10668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23733T>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23733T>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23733T>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23733T>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.42T>G
  hgvsp: ENST00000442934.2:c.42T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23733T>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23733T>G
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser14Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-55363290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363290
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363290
    reference: chr 17
allele count: 283
allele frequency: 2.645848915482423e-2
allele num: 10696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23737C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23737C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23737C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23737C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.46C>T
  hgvsp: ENSP00000392607.2:p.His16Tyr
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23737C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23737C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.75e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.75e1
  variant carriers: 1
hgvs: p.His16Tyr
num of homozygotes: 4
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-55363293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363293
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363293
    reference: chr 17
allele count: 5
allele frequency: 4.670278348589576e-4
allele num: 10706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23740G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23740G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23740G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23740G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.49G>A
  hgvsp: ENSP00000392607.2:p.Val17Met
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23740G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23740G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val17Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-55363312-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363312
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363312
    reference: chr 17
allele count: 1
allele frequency: 9.324878776575905e-5
allele num: 10724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23759T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.68T>C
  hgvsp: ENSP00000392607.2:p.Ile23Thr
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23759T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23759T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23759T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23759T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23759T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile23Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-55363407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363407
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363407
    reference: chr 17
allele count: 1
allele frequency: 1.229105211406096e-4
allele num: 8136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23854G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.129+34G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23854G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23854G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23854G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23854G>A
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23854G>A
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-55363421-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55363421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55363421
    reference: chr 17
allele count: 5696
allele frequency: 7.811300054854635e-1
allele num: 7292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000463227
  ensembl transcript: ENST00000581776
  gene symbol: MSI2
  hgvsc: ENST00000581776.1:c.*90+23868G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.300+23868G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.129+48G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.300+23868G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.312+23868G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.281+23868G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.246+23868G>C
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.25e1
  variant carriers: 2128
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 1636
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 1076
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 399
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 247
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 6.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 601
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.75e1
  variant carriers: 290
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.25e1
  variant carriers: 523
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.5e0
  variant carriers: 416
num of homozygotes: 2229
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-55478699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478699
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478699
    reference: chr 17
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.130-41A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.247-41A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.313-41A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.282-41A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.1-41A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.301-41A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.301-41A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-55478713-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478713
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478713
    reference: chr 17
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.247-27A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.301-27A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.282-27A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.130-27A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.313-27A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.1-27A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.301-27A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-55478717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478717
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478717
    reference: chr 17
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.247-23C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.313-23C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.1-23C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.130-23C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.282-23C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.301-23C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.301-23C>T
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

17-55478719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478719
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478719
    reference: chr 17
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.247-21T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.1-21T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.301-21T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.301-21T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.130-21T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.313-21T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.282-21T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-55478726-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478726
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478726
    reference: chr 17
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.247-14G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.301-14G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.301-14G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.130-14G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.1-14G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.282-14G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.313-14G>C
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-55478730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478730
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478730
    reference: chr 17
allele count: 15
allele frequency: 1.236175438018163e-4
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.1-10T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.301-10T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.130-10T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.282-10T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.301-10T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.247-10T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.313-10T>C
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

17-55478742-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478742
    reference: chr 17
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.284G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.3G>T
  hgvsp: ENSP00000462264.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.303G>T
  hgvsp: ENSP00000462914.1:p.Met101Ile
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.315G>T
  hgvsp: ENSP00000284073.2:p.Met105Ile
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.249G>T
  hgvsp: ENSP00000414671.2:p.Met83Ile
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.132G>T
  hgvsp: ENSP00000392607.2:p.Met44Ile
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.303G>T
  hgvsp: ENSP00000313616.3:p.Met101Ile
  variant of: http://identifiers.org/hgnc/18585
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-55478743-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478743
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478743
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.250G>T
  hgvsp: ENSP00000414671.2:p.Val84Phe
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.133G>T
  hgvsp: ENSP00000392607.2:p.Val45Phe
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.4G>T
  hgvsp: ENSP00000462264.1:p.Val2Phe
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.304G>T
  hgvsp: ENSP00000462914.1:p.Val102Phe
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.304G>T
  hgvsp: ENSP00000313616.3:p.Val102Phe
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.285G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.316G>T
  hgvsp: ENSP00000284073.2:p.Val106Phe
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val106Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-55478748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478748
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478748
    reference: chr 17
allele count: 2361
allele frequency: 1.945034847511245e-2
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.321A>G
  hgvsp: ENST00000284073.2:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.309A>G
  hgvsp: ENST00000579590.1:c.309A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.9A>G
  hgvsp: ENST00000579180.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.309A>G
  hgvsp: ENST00000322684.3:c.309A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.138A>G
  hgvsp: ENST00000442934.2:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.255A>G
  hgvsp: ENST00000416426.2:c.255A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.290A>G
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 9.75e1
  variant carriers: 1591
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 6.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 4510
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27121
  bin: 9.75e1
  variant carriers: 2320
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr107Thr
num of homozygotes: 41
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-55478766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478766
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478766
    reference: chr 17
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.308T>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.156T>C
  hgvsp: ENST00000442934.2:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.27T>C
  hgvsp: ENST00000579180.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.273T>C
  hgvsp: ENST00000416426.2:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.339T>C
  hgvsp: ENST00000284073.2:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.327T>C
  hgvsp: ENST00000579590.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.327T>C
  hgvsp: ENST00000322684.3:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4833
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25856
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe113Phe
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

17-55478772-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478772
    reference: chr 17
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.162C>G
  hgvsp: ENST00000442934.2:c.162C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.314C>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.279C>G
  hgvsp: ENST00000416426.2:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.345C>G
  hgvsp: ENST00000284073.2:c.345C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.333C>G
  hgvsp: ENST00000322684.3:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.33C>G
  hgvsp: ENST00000579180.1:c.33C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.333C>G
  hgvsp: ENST00000579590.1:c.333C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4833
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly115Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-55478772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478772
    reference: chr 17
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.279C>T
  hgvsp: ENST00000416426.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.345C>T
  hgvsp: ENST00000284073.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.333C>T
  hgvsp: ENST00000322684.3:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.333C>T
  hgvsp: ENST00000579590.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.314C>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.33C>T
  hgvsp: ENST00000579180.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.162C>T
  hgvsp: ENST00000442934.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25859
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly115Gly
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-55478775-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478775
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478775
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.165G>C
  hgvsp: ENST00000442934.2:c.165G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.36G>C
  hgvsp: ENST00000579180.1:c.36G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.282G>C
  hgvsp: ENST00000416426.2:c.282G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.348G>C
  hgvsp: ENST00000284073.2:c.348G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.336G>C
  hgvsp: ENST00000579590.1:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.317G>C
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.336G>C
  hgvsp: ENST00000322684.3:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly116Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

17-55478775-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478775
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478775
    reference: chr 17
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.336G>T
  hgvsp: ENST00000579590.1:c.336G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.336G>T
  hgvsp: ENST00000322684.3:c.336G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.282G>T
  hgvsp: ENST00000416426.2:c.282G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.317G>T
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.165G>T
  hgvsp: ENST00000442934.2:c.165G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.36G>T
  hgvsp: ENST00000579180.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.348G>T
  hgvsp: ENST00000284073.2:c.348G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly116Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

17-55478778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55478778
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 55478778
    reference: chr 17
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000313616
  ensembl transcript: ENST00000322684
  gene symbol: MSI2
  hgvsc: ENST00000322684.3:c.339A>G
  hgvsp: ENST00000322684.3:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462264
  ensembl transcript: ENST00000579180
  gene symbol: MSI2
  hgvsc: ENST00000579180.1:c.39A>G
  hgvsp: ENST00000579180.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153944
  ensembl transcript: ENST00000582453
  gene symbol: MSI2
  hgvsc: ENST00000582453.1:n.320A>G
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000462914
  ensembl transcript: ENST00000579590
  gene symbol: MSI2
  hgvsc: ENST00000579590.1:c.339A>G
  hgvsp: ENST00000579590.1:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000414671
  ensembl transcript: ENST00000416426
  gene symbol: MSI2
  hgvsc: ENST00000416426.2:c.285A>G
  hgvsp: ENST00000416426.2:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000392607
  ensembl transcript: ENST00000442934
  gene symbol: MSI2
  hgvsc: ENST00000442934.2:c.168A>G
  hgvsp: ENST00000442934.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153944
  ensembl protein: ENSP00000284073
  ensembl transcript: ENST00000284073
  gene symbol: MSI2
  hgvsc: ENST00000284073.2:c.351A>G
  hgvsp: ENST00000284073.2:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu117Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
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Other
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allele num: 908
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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FS
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MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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MQ
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FS
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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Other
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African
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European (Finnish)
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MQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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Other
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European (Non-Finnish)
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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African
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Other
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QD
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DP
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
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SIO_000300: -5.891e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.231e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

FS
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 3.604106e6

VQSLOD
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SIO_000300: 1.05e0

BaseQRankSum
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SIO_000300: -3.664e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.369e1

DP
type: SiteQuality
SIO_000300: 3.604122e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.1909e1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.994485073732166e-5
allele num: 66728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

VQSLOD
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SIO_000300: 1.25e0

BaseQRankSum
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SIO_000300: -3.393e0

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
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DP
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MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.688e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

MQ
type: SiteQuality
SIO_000300: 5.832e1

DP
type: SiteQuality
SIO_000300: 3.603149e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 35

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 3.269859588382381e-3
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.491e1

DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 23
allele frequency: 1.393095093882496e-3
allele num: 16510
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 60
allele frequency: 6.93321007626531e-3
allele num: 8654
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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South Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
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European (Finnish)
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num of homozygotes: 0

DP
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3715
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.982064567556796e-4
allele num: 10036
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

InbreedingCoeff
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SIO_000300: 2.35e-2

DP
type: SiteQuality
SIO_000300: 2.672273e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.433e1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.473026163463765e-4
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

FS
type: SiteQuality
SIO_000300: 1.6922e1

VQSLOD
type: SiteQuality
SIO_000300: -2.258e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.673996e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.675007e6

ClippingRankSum
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SIO_000300: -2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.634e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.950248756218905e-5
allele num: 10050
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.569e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.085e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.676094e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.677117e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.335e0

VQSLOD
type: SiteQuality
SIO_000300: -1.552e0

FS
type: SiteQuality
SIO_000300: 1.804e0

MQRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.463e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.065752759917505e-5
allele num: 16486
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10076
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

East Asian
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

Other
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East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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DP
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.512363877023043e-5
allele num: 66484
num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.8e-3

VQSLOD
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FS
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SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
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SIO_000300: -3.66e-1

ReadPosRankSum
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SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 2.691454e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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DP
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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SIO_000300: -2.781e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.502341217433065e-5
allele num: 66632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.053e1

ReadPosRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 3.822e0

MQRankSum
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BaseQRankSum
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SIO_000300: -3.78e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 2.686288e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

DP
type: SiteQuality
SIO_000300: 2.685181e6

QD
type: SiteQuality
SIO_000300: 2.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.68e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.388e0

ClippingRankSum
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SIO_000300: 2.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ClippingRankSum
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BaseQRankSum
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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allele frequency: 1.934984520123839e-4
allele num: 10336
num of homozygotes: 0

East Asian
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

Latino
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num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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African
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allele num: 10340
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South Asian
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.50355781067043e-5
allele num: 66614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.595604775912787e-4
allele num: 11558
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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VQSLOD
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ClippingRankSum
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SIO_000300: -7.7e-2

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele num: 16484
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11558
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
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MQ
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FS
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66618
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.65e-1

QD
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BaseQRankSum
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SIO_000300: -3.851e0

FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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DP
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MQRankSum
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SIO_000300: 6.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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SIO_000300: -2.055e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.188e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 3.086e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
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East Asian
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allele count: 11
allele frequency: 1.271382339343504e-3
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 6.2e-3

MQ
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SIO_000300: 5.976e1

BaseQRankSum
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SIO_000300: 1.53e0

QD
type: SiteQuality
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MQRankSum
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DP
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FS
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VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -2.98e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66580
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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Other
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South Asian
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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South Asian
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African
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QD
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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African
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Latino
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Other
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European (Non-Finnish)
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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QD
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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MQRankSum
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QD
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ClippingRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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Latino
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South Asian
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East Asian
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MQ
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 4.484304932735426e-4
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African
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East Asian
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Latino
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MQRankSum
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Other
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Latino
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South Asian
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European (Non-Finnish)
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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Latino
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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African
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South Asian
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allele frequency: 6.672004270082733e-4
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European (Finnish)
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Latino
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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Latino
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African
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allele frequency: 0.0e0
allele num: 168
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European (Finnish)
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allele num: 0
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ReadPosRankSum
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SIO_000300: -1.002e0

InbreedingCoeff
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VQSLOD
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MQ
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FS
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DP
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 73

Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 8.192148760330579e-1
allele num: 1936
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African
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Other
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South Asian
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allele frequency: 7.62922262922263e-1
allele num: 4914
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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MQ
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DP
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SIO_000300: 7.1693e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 1.155535012710885e-4
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66654
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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SIO_000300: 5.979e1

ClippingRankSum
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MQRankSum
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QD
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DP
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VQSLOD
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ReadPosRankSum
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SIO_000300: 2.97e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6612
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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QD
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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European (Finnish)
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num of homozygotes: 0

MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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MQRankSum
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FS
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QD
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DP
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SIO_000300: 2.512878e6

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
all individuals: 4303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5504
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.869e1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

FS
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 2.512861e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.742e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 2.512911e6

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.141e1

GenotypeQuality
all individuals: 9518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 280
allele frequency: 4.2334442092531e-2
allele num: 6614
num of homozygotes: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1740
allele frequency: 2.607991846278366e-2
allele num: 66718
num of homozygotes: 28

Latino
type: Population
allele count: 131
allele frequency: 1.13145621005355e-2
allele num: 11578
num of homozygotes: 3

Other
type: Population
allele count: 17
allele frequency: 1.872246696035242e-2
allele num: 908
num of homozygotes: 1

African
type: Population
allele count: 44
allele frequency: 4.228329809725159e-3
allele num: 10406
num of homozygotes: 1

South Asian
type: Population
allele count: 149
allele frequency: 9.025926823358371e-3
allele num: 16508
num of homozygotes: 2

DP
type: SiteQuality
SIO_000300: 2.66055e6

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 1.165e0

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.762e0

VQSLOD
type: SiteQuality
SIO_000300: 4.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2480
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variant carriers: 0

GenotypeQuality
all individuals: 4400
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variant carriers: 0

GenotypeQuality
all individuals: 9819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 2.707e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 2.496954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4397
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25859
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

DP
type: SiteQuality
SIO_000300: 2.497206e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9818
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.497206e6

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

GenotypeQuality
all individuals: 4835
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9827
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variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4685
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variant carriers: 0

GenotypeQuality
all individuals: 25853
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 2.496903e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.385e1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

GenotypeQuality
all individuals: 25853
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4835
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variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

FS
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.496903e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 5662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25853
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0