20-62340343-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340343
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340343
    reference: chr 20
allele count: 1
allele frequency: 8.299168423323983e-6
allele num: 120494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.411C>G
  hgvsp: ENST00000448100.2:c.411C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.519C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.411C>G
  hgvsp: ENST00000355969.6:c.411C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.411C>G
  hgvsp: ENST00000369967.3:c.411C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.411C>G
  hgvsp: ENST00000328969.5:c.411C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.411C>G
  hgvsp: ENST00000357119.4:c.411C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.128C>G
  hgvsp: ENST00000490623.2:c.128C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.111C>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro43Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/20-62340343-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340343
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340343
    reference: chr 20
allele count: 1
allele frequency: 8.299168423323983e-6
allele num: 120494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.111C>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.519C>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.128C>A
  hgvsp: ENST00000490623.2:c.128C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.411C>A
  hgvsp: ENST00000369967.3:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.411C>A
  hgvsp: ENST00000357119.4:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.411C>A
  hgvsp: ENST00000355969.6:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.411C>A
  hgvsp: ENST00000328969.5:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.411C>A
  hgvsp: ENST00000448100.2:c.411C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro43Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

20-62340351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340351
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340351
    reference: chr 20
allele count: 2
allele frequency: 1.659172736473594e-5
allele num: 120542
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.136G>A
  hgvsp: ENSP00000476393.1:p.Ser46Asn
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.419G>A
  hgvsp: ENSP00000358984.3:p.Ser140Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.527G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.419G>A
  hgvsp: ENSP00000348242.6:p.Ser140Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.419G>A
  hgvsp: ENSP00000332013.5:p.Ser140Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.419G>A
  hgvsp: ENSP00000391176.1:p.Ser140Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.119G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.419G>A
  hgvsp: ENSP00000349634.4:p.Ser140Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.2G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser140Asn
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

20-62340355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340355
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340355
    reference: chr 20
allele count: 1
allele frequency: 8.29476268683953e-6
allele num: 120558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.423C>T
  hgvsp: ENST00000369967.3:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.423C>T
  hgvsp: ENST00000328969.5:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.6C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.423C>T
  hgvsp: ENST00000448100.2:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.423C>T
  hgvsp: ENST00000355969.6:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.123C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.140C>T
  hgvsp: ENST00000490623.2:c.140C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.531C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.423C>T
  hgvsp: ENST00000357119.4:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser141Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

20-62340363-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340363
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340363
    reference: chr 20
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.431C>G
  hgvsp: ENSP00000349634.4:p.Thr144Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.431C>G
  hgvsp: ENSP00000348242.6:p.Thr144Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.14C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.539C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.148C>G
  hgvsp: ENSP00000476393.1:p.Thr50Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.431C>G
  hgvsp: ENSP00000358984.3:p.Thr144Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.431C>G
  hgvsp: ENSP00000391176.1:p.Thr144Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.431C>G
  hgvsp: ENSP00000332013.5:p.Thr144Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.131C>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11778
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr144Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

20-62340372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340372
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340372
    reference: chr 20
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.440A>G
  hgvsp: ENSP00000358984.3:p.Tyr147Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.23A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.157A>G
  hgvsp: ENSP00000476393.1:p.Tyr53Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.440A>G
  hgvsp: ENSP00000391176.1:p.Tyr147Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.440A>G
  hgvsp: ENSP00000348242.6:p.Tyr147Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.548A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.140A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.440A>G
  hgvsp: ENSP00000349634.4:p.Tyr147Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.440A>G
  hgvsp: ENSP00000332013.5:p.Tyr147Cys
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr147Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

20-62340388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340388
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340388
    reference: chr 20
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.456G>A
  hgvsp: ENST00000448100.2:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.456G>A
  hgvsp: ENST00000369967.3:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.564G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.456G>A
  hgvsp: ENST00000355969.6:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.173G>A
  hgvsp: ENST00000490623.2:c.173G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.456G>A
  hgvsp: ENST00000328969.5:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.156G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.39G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.456G>A
  hgvsp: ENST00000357119.4:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val152Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

20-62340390-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340390
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340390
    reference: chr 20
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.566T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.175T>G
  hgvsp: ENSP00000476393.1:p.Val59Gly
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.41T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.458T>G
  hgvsp: ENSP00000358984.3:p.Val153Gly
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.458T>G
  hgvsp: ENSP00000332013.5:p.Val153Gly
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.458T>G
  hgvsp: ENSP00000348242.6:p.Val153Gly
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.458T>G
  hgvsp: ENSP00000391176.1:p.Val153Gly
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.158T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.458T>G
  hgvsp: ENSP00000349634.4:p.Val153Gly
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22284
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val153Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

20-62340391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340391
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340391
    reference: chr 20
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.459G>A
  hgvsp: ENST00000355969.6:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.42G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.176G>A
  hgvsp: ENST00000490623.2:c.176G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.459G>A
  hgvsp: ENST00000328969.5:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.459G>A
  hgvsp: ENST00000369967.3:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.159G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.459G>A
  hgvsp: ENST00000448100.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.567G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.459G>A
  hgvsp: ENST00000357119.4:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val153Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

20-62340396-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340396
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340396
    reference: chr 20
allele count: 2
allele frequency: 1.657302905251993e-5
allele num: 120678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.464C>G
  hgvsp: ENSP00000391176.1:p.Thr155Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.47C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.464C>G
  hgvsp: ENSP00000358984.3:p.Thr155Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.464C>G
  hgvsp: ENSP00000332013.5:p.Thr155Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.164C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.464C>G
  hgvsp: ENSP00000348242.6:p.Thr155Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.181C>G
  hgvsp: ENSP00000476393.1:p.Thr61Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.572C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.464C>G
  hgvsp: ENSP00000349634.4:p.Thr155Arg
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr155Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-62340404-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340404
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340404
    reference: chr 20
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.472G>A
  hgvsp: ENSP00000391176.1:p.Ala158Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.189G>A
  hgvsp: ENSP00000476393.1:p.Ala64Thr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.472G>A
  hgvsp: ENSP00000358984.3:p.Ala158Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.472G>A
  hgvsp: ENSP00000332013.5:p.Ala158Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.472G>A
  hgvsp: ENSP00000348242.6:p.Ala158Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.580G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.172G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.472G>A
  hgvsp: ENSP00000349634.4:p.Ala158Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.55G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala158Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

20-62340407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340407
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340407
    reference: chr 20
allele count: 6
allele frequency: 4.968532626697582e-5
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.192G>A
  hgvsp: ENSP00000476393.1:p.Glu65Lys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.58G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.475G>A
  hgvsp: ENSP00000349634.4:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.475G>A
  hgvsp: ENSP00000391176.1:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.583G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.475G>A
  hgvsp: ENSP00000358984.3:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.475G>A
  hgvsp: ENSP00000332013.5:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.475G>A
  hgvsp: ENSP00000348242.6:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.175G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu159Lys
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

20-62340419-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340419
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340419
    reference: chr 20
allele count: 3
allele frequency: 2.486654951758894e-5
allele num: 120644
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.204G>T
  hgvsp: ENSP00000476393.1:p.Ala69Ser
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.70G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.487G>T
  hgvsp: ENSP00000349634.4:p.Ala163Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.595G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.487G>T
  hgvsp: ENSP00000348242.6:p.Ala163Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.487G>T
  hgvsp: ENSP00000332013.5:p.Ala163Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.187G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.487G>T
  hgvsp: ENSP00000391176.1:p.Ala163Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.487G>T
  hgvsp: ENSP00000358984.3:p.Ala163Ser
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala163Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

20-62340421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340421
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340421
    reference: chr 20
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.206G>A
  hgvsp: ENST00000490623.2:c.206G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.489G>A
  hgvsp: ENST00000448100.2:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.72G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.597G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.489G>A
  hgvsp: ENST00000355969.6:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.189G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.489G>A
  hgvsp: ENST00000369967.3:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.489G>A
  hgvsp: ENST00000357119.4:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.489G>A
  hgvsp: ENST00000328969.5:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4668
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala163Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

20-62340421-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340421
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340421
    reference: chr 20
allele count: 8
allele frequency: 6.63129973474801e-5
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.489G>C
  hgvsp: ENST00000448100.2:c.489G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.489G>C
  hgvsp: ENST00000328969.5:c.489G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.189G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.489G>C
  hgvsp: ENST00000369967.3:c.489G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.72G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.489G>C
  hgvsp: ENST00000355969.6:c.489G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.489G>C
  hgvsp: ENST00000357119.4:c.489G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.206G>C
  hgvsp: ENST00000490623.2:c.206G>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.597G>C
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala163Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

20-62340424-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340424
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340424
    reference: chr 20
allele count: 2080
allele frequency: 1.925498037473154e-2
allele num: 108024
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.209T>G
  hgvsp: ENST00000490623.2:c.209T>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.600T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.492T>G
  hgvsp: ENST00000328969.5:c.492T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.75T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.492T>G
  hgvsp: ENST00000448100.2:c.492T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.492T>G
  hgvsp: ENST00000357119.4:c.492T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.492T>G
  hgvsp: ENST00000355969.6:c.492T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.492T>G
  hgvsp: ENST00000369967.3:c.492T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.192T>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 5.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 6.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 5.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 9.75e1
  variant carriers: 979
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 8.25e1
  variant carriers: 196
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.5e0
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 7.75e1
  variant carriers: 65
hgvs: p.Gly164Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/20-62340428-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340428
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340428
    reference: chr 20
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.604C>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.496C>A
  hgvsp: ENSP00000349634.4:p.Arg166Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.213C>A
  hgvsp: ENSP00000476393.1:p.Arg72Ser
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.79C>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.496C>A
  hgvsp: ENSP00000332013.5:p.Arg166Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.496C>A
  hgvsp: ENSP00000358984.3:p.Arg166Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.496C>A
  hgvsp: ENSP00000391176.1:p.Arg166Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.496C>A
  hgvsp: ENSP00000348242.6:p.Arg166Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.196C>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20227
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg166Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

20-62340428-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340428
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340428
    reference: chr 20
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.604C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.496C>T
  hgvsp: ENSP00000349634.4:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.496C>T
  hgvsp: ENSP00000348242.6:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.496C>T
  hgvsp: ENSP00000358984.3:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.496C>T
  hgvsp: ENSP00000391176.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.213C>T
  hgvsp: ENSP00000476393.1:p.Arg72Cys
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.496C>T
  hgvsp: ENSP00000332013.5:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.196C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.79C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg166Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

20-62340440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340440
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340440
    reference: chr 20
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.508C>T
  hgvsp: ENST00000328969.5:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.508C>T
  hgvsp: ENST00000448100.2:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.508C>T
  hgvsp: ENST00000369967.3:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.616C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.91C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.225C>T
  hgvsp: ENST00000490623.2:c.225C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.508C>T
  hgvsp: ENST00000355969.6:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.508C>T
  hgvsp: ENST00000357119.4:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.208C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6545
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu170Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

20-62340442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340442
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340442
    reference: chr 20
allele count: 18
allele frequency: 1.492685839387004e-4
allele num: 120588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.510G>A
  hgvsp: ENST00000369967.3:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.93G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.510G>A
  hgvsp: ENST00000448100.2:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.227G>A
  hgvsp: ENST00000490623.2:c.227G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.510G>A
  hgvsp: ENST00000328969.5:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.2G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.510G>A
  hgvsp: ENST00000357119.4:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.618G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.210G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.510G>A
  hgvsp: ENST00000355969.6:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu76Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

20-62340445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340445
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340445
    reference: chr 20
allele count: 26
allele frequency: 2.155887230514096e-4
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.230C>T
  hgvsp: ENST00000490623.2:c.230C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.513C>T
  hgvsp: ENST00000357119.4:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.513C>T
  hgvsp: ENST00000448100.2:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.5C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.213C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.513C>T
  hgvsp: ENST00000369967.3:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.513C>T
  hgvsp: ENST00000328969.5:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.96C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.513C>T
  hgvsp: ENST00000355969.6:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.621C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr77Tyr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

20-62340448-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340448
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340448
    reference: chr 20
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.8C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.216C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.516C>G
  hgvsp: ENST00000357119.4:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.99C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.624C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.233C>G
  hgvsp: ENST00000490623.2:c.233C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.516C>G
  hgvsp: ENST00000448100.2:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.516C>G
  hgvsp: ENST00000355969.6:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.516C>G
  hgvsp: ENST00000369967.3:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.516C>G
  hgvsp: ENST00000328969.5:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro78Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-62340454-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340454
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340454
    reference: chr 20
allele count: 2
allele frequency: 1.658704883227176e-5
allele num: 120576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.522C>G
  hgvsp: ENSP00000358984.3:p.His174Gln
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.630C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.222C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.522C>G
  hgvsp: ENSP00000332013.5:p.His174Gln
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.105C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.522C>G
  hgvsp: ENSP00000348242.6:p.His174Gln
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.522C>G
  hgvsp: ENSP00000391176.1:p.His174Gln
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.522C>G
  hgvsp: ENSP00000349634.4:p.His174Gln
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.239C>G
  hgvsp: ENSP00000476393.1:p.His80Gln
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.14C>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His80Gln
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

20-62340457-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340457
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340457
    reference: chr 20
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.525G>C
  hgvsp: ENSP00000348242.6:p.Lys175Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.225G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.17G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.525G>C
  hgvsp: ENSP00000358984.3:p.Lys175Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.525G>C
  hgvsp: ENSP00000349634.4:p.Lys175Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.242G>C
  hgvsp: ENSP00000476393.1:p.Lys81Asn
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.525G>C
  hgvsp: ENSP00000332013.5:p.Lys175Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.108G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.525G>C
  hgvsp: ENSP00000391176.1:p.Lys175Asn
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.633G>C
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys81Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

20-62340463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340463
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340463
    reference: chr 20
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.531G>A
  hgvsp: ENST00000369967.3:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.531G>A
  hgvsp: ENST00000357119.4:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.639G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.23G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.531G>A
  hgvsp: ENST00000448100.2:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.114G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.248G>A
  hgvsp: ENST00000490623.2:c.248G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.531G>A
  hgvsp: ENST00000328969.5:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.231G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.531G>A
  hgvsp: ENST00000355969.6:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu83Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/20-62340465-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340465
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340465
    reference: chr 20
allele count: 1
allele frequency: 8.296138976920141e-6
allele num: 120538
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.250A>C
  hgvsp: ENSP00000476393.1:p.Lys84Thr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.116A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.533A>C
  hgvsp: ENSP00000358984.3:p.Lys178Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.533A>C
  hgvsp: ENSP00000391176.1:p.Lys178Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.233A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.25A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.533A>C
  hgvsp: ENSP00000332013.5:p.Lys178Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.533A>C
  hgvsp: ENSP00000348242.6:p.Lys178Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.533A>C
  hgvsp: ENSP00000349634.4:p.Lys178Thr
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.641A>C
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys84Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

20-62340466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340466
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340466
    reference: chr 20
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.534G>A
  hgvsp: ENST00000357119.4:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.534G>A
  hgvsp: ENST00000328969.5:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.251G>A
  hgvsp: ENST00000490623.2:c.251G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.26G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.534G>A
  hgvsp: ENST00000369967.3:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.534G>A
  hgvsp: ENST00000448100.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.642G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.534G>A
  hgvsp: ENST00000355969.6:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.234G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.117G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6518
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys84Lys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

20-62340467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340467
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340467
    reference: chr 20
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.535C>T
  hgvsp: ENSP00000348242.6:p.Pro179Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.535C>T
  hgvsp: ENSP00000358984.3:p.Pro179Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.535C>T
  hgvsp: ENSP00000391176.1:p.Pro179Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.252C>T
  hgvsp: ENSP00000476393.1:p.Pro85Ser
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.235C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.27C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.535C>T
  hgvsp: ENSP00000349634.4:p.Pro179Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.118C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.535C>T
  hgvsp: ENSP00000332013.5:p.Pro179Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.643C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro85Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-62340468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340468
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340468
    reference: chr 20
allele count: 1
allele frequency: 8.296964970213896e-6
allele num: 120526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.28C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.536C>T
  hgvsp: ENSP00000348242.6:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.236C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.536C>T
  hgvsp: ENSP00000358984.3:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.536C>T
  hgvsp: ENSP00000391176.1:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.644C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.253C>T
  hgvsp: ENSP00000476393.1:p.Pro85Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.536C>T
  hgvsp: ENSP00000349634.4:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.119C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.536C>T
  hgvsp: ENSP00000332013.5:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro85Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

20-62340472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340472
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340472
    reference: chr 20
allele count: 2
allele frequency: 1.659999004000598e-5
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.540C>T
  hgvsp: ENST00000328969.5:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.540C>T
  hgvsp: ENST00000355969.6:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.648C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.32C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.540C>T
  hgvsp: ENST00000448100.2:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.123C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.540C>T
  hgvsp: ENST00000357119.4:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.540C>T
  hgvsp: ENST00000369967.3:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.257C>T
  hgvsp: ENST00000490623.2:c.257C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.240C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys86Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-62340473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340473
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340473
    reference: chr 20
allele count: 3
allele frequency: 2.489957172736629e-5
allele num: 120484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.33C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.541C>T
  hgvsp: ENSP00000349634.4:p.Pro181Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.124C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.541C>T
  hgvsp: ENSP00000358984.3:p.Pro181Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.541C>T
  hgvsp: ENSP00000391176.1:p.Pro181Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.541C>T
  hgvsp: ENSP00000348242.6:p.Pro181Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.241C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.541C>T
  hgvsp: ENSP00000332013.5:p.Pro181Ser
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.258C>T
  hgvsp: ENSP00000476393.1:p.Pro87Ser
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.649C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro87Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

20-62340474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340474
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340474
    reference: chr 20
allele count: 105
allele frequency: 8.715862870424172e-4
allele num: 120470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.242C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.542C>T
  hgvsp: ENSP00000332013.5:p.Pro181Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.259C>T
  hgvsp: ENSP00000476393.1:p.Pro87Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.34C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.650C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.542C>T
  hgvsp: ENSP00000391176.1:p.Pro181Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.542C>T
  hgvsp: ENSP00000358984.3:p.Pro181Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.542C>T
  hgvsp: ENSP00000349634.4:p.Pro181Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.542C>T
  hgvsp: ENSP00000348242.6:p.Pro181Leu
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.125C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro87Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

20-62340481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340481
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340481
    reference: chr 20
allele count: 2
allele frequency: 1.661322745169704e-5
allele num: 120386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.549C>T
  hgvsp: ENST00000448100.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.657C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.549C>T
  hgvsp: ENST00000355969.6:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.549C>T
  hgvsp: ENST00000357119.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.41C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.549C>T
  hgvsp: ENST00000328969.5:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.249C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.266C>T
  hgvsp: ENST00000490623.2:c.266C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.132C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.549C>T
  hgvsp: ENST00000369967.3:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4124
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe89Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

20-62340482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340482
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340482
    reference: chr 20
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.658C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.550C>T
  hgvsp: ENST00000369967.3:c.550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.550C>T
  hgvsp: ENST00000357119.4:c.550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.550C>T
  hgvsp: ENST00000328969.5:c.550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.550C>T
  hgvsp: ENST00000355969.6:c.550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.267C>T
  hgvsp: ENST00000490623.2:c.267C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.550C>T
  hgvsp: ENST00000448100.2:c.550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.250C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.133C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.42C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu90Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

20-62340488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340488
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340488
    reference: chr 20
allele count: 1
allele frequency: 8.317945134833891e-6
allele num: 120222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.48G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.556G>A
  hgvsp: ENSP00000358984.3:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.139G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.556G>A
  hgvsp: ENSP00000391176.1:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.556G>A
  hgvsp: ENSP00000332013.5:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.256G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.273G>A
  hgvsp: ENSP00000476393.1:p.Gly92Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.556G>A
  hgvsp: ENSP00000348242.6:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.556G>A
  hgvsp: ENSP00000349634.4:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.664G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly92Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

20-62340497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340497
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340497
    reference: chr 20
allele count: 1
allele frequency: 8.331805835596807e-6
allele num: 120022
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.282C>T
  hgvsp: ENSP00000476393.1:p.Arg95Cys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.673C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.565C>T
  hgvsp: ENSP00000391176.1:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.565C>T
  hgvsp: ENSP00000358984.3:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.565C>T
  hgvsp: ENSP00000349634.4:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.265C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.148C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.565C>T
  hgvsp: ENSP00000348242.6:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.57C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.565C>T
  hgvsp: ENSP00000332013.5:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg95Cys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

20-62340499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340499
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340499
    reference: chr 20
allele count: 13
allele frequency: 1.083604234391931e-4
allele num: 119970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.150C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.267C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.675C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.284C>T
  hgvsp: ENST00000490623.2:c.284C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.567C>T
  hgvsp: ENST00000357119.4:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.59C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.567C>T
  hgvsp: ENST00000328969.5:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.567C>T
  hgvsp: ENST00000355969.6:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.567C>T
  hgvsp: ENST00000448100.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.567C>T
  hgvsp: ENST00000369967.3:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg95Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

20-62340506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340506
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340506
    reference: chr 20
allele count: 2
allele frequency: 1.66925401038276e-5
allele num: 119814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.66G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.574G>A
  hgvsp: ENSP00000349634.4:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.291G>A
  hgvsp: ENSP00000476393.1:p.Glu98Lys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.574G>A
  hgvsp: ENSP00000358984.3:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.574G>A
  hgvsp: ENSP00000332013.5:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.682G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.274G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.574G>A
  hgvsp: ENSP00000348242.6:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.157G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.574G>A
  hgvsp: ENSP00000391176.1:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu98Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

20-62340518-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340518
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340518
    reference: chr 20
allele count: 1
allele frequency: 8.371703641691085e-6
allele num: 119450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+2T>C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+2T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+2T>C
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
hgvs: c.584+2T>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

20-62340524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340524
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340524
    reference: chr 20
allele count: 1
allele frequency: 8.384900471231407e-6
allele num: 119262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+8C>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+8C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+8C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20033
  bin: 9.75e1
  variant carriers: 1
hgvs: c.584+8C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

20-62340529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340529
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340529
    reference: chr 20
allele count: 2
allele frequency: 1.678471919164792e-5
allele num: 119156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+13G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+13G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

20-62340531-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340531
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340531
    reference: chr 20
allele count: 1
allele frequency: 8.394050297149381e-6
allele num: 119132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+15T>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+15T>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-62340543-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340543
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340543
    reference: chr 20
allele count: 2
allele frequency: 1.684295627568551e-5
allele num: 118744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+27A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+27A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+27A>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

20-62340546-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340546
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340546
    reference: chr 20
allele count: 1
allele frequency: 8.429002511842749e-6
allele num: 118638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+30T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+30T>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+30T>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

20-62340548-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340548
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340548
    reference: chr 20
allele count: 1
allele frequency: 8.439388313135065e-6
allele num: 118492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+32A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+32A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+32A>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20021
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

20-62340552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340552
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340552
    reference: chr 20
allele count: 1
allele frequency: 8.440813019110001e-6
allele num: 118472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+36G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+36G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20021
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/20-62340556-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340556
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340556
    reference: chr 20
allele count: 7
allele frequency: 5.913360816381699e-5
allele num: 118376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+40A>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+40A>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9238
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

20-62340559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340559
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340559
    reference: chr 20
allele count: 1
allele frequency: 8.454085859695991e-6
allele num: 118286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+43G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+43G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+43G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

20-62340560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340560
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340560
    reference: chr 20
allele count: 1
allele frequency: 8.456516591685553e-6
allele num: 118252
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+44G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+44G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+44G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

20-62340563-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340563
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340563
    reference: chr 20
allele count: 3
allele frequency: 2.538672443556849e-5
allele num: 118172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+47A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+47A>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+47A>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

20-62340564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340564
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340564
    reference: chr 20
allele count: 2
allele frequency: 1.693279374163943e-5
allele num: 118114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+48C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

20-62340566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62340566
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62340566
    reference: chr 20
allele count: 2
allele frequency: 1.696410395602904e-5
allele num: 117896
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.301+50C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.284+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.584+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.584+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.584+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.584+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.692+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.76+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.584+50C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.167+50C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

20-62364523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364523
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364523
    reference: chr 20
allele count: 3
allele frequency: 2.552235758524467e-5
allele num: 117544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-48C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-48C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-48C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12046
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

20-62364531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364531
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364531
    reference: chr 20
allele count: 3
allele frequency: 2.549242874866165e-5
allele num: 117682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-40G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-40G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-40G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

20-62364534-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364534
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364534
    reference: chr 20
allele count: 2
allele frequency: 1.698456103402008e-5
allele num: 117754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-37C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-37C>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-37C>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

20-62364543-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364543
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364543
    reference: chr 20
allele count: 3
allele frequency: 2.541898967989019e-5
allele num: 118022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-28G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-28G>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-28G>C
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16212
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9136
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

20-62364547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364547
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364547
    reference: chr 20
allele count: 1
allele frequency: 8.455801525426595e-6
allele num: 118262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-24T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-24T>C
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-24T>C
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

20-62364556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364556
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364556
    reference: chr 20
allele count: 8
allele frequency: 6.743315688323949e-5
allele num: 118636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-15C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-15C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-15C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17509
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

20-62364557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364557
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364557
    reference: chr 20
allele count: 1
allele frequency: 8.419067504083248e-6
allele num: 118778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-14G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-14G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-14G>A
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum

20-62364568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364568
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364568
    reference: chr 20
allele count: 50
allele frequency: 4.184520621317622e-4
allele num: 119488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.168-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.77-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.302-3C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.585-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.585-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.693-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.285-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.585-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.585-3C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.585-3C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18287
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24399
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 8.75e1
  variant carriers: 0
hgvs: c.585-3C>T
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

20-62364571-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364571
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364570
    reference: chr 20
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.587delT
  hgvsp: ENSP00000391176.1:p.Phe196SerfsTer20
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.587delT
  hgvsp: ENSP00000348242.6:p.Phe196SerfsTer20
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.587delT
  hgvsp: ENSP00000358984.3:p.Phe196SerfsTer20
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.170delT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.79delT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.695delT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.287delT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.587delT
  hgvsp: ENSP00000332013.5:p.Phe196SerfsTer20
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.587delT
  hgvsp: ENSP00000349634.4:p.Phe196SerfsTer20
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.304delT
  hgvsp: ENSP00000476393.1:p.Phe102SerfsTer20
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 24500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe196SerfsTer20
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: GT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

20-62364590-GTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364590
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364588
    reference: chr 20
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.610_611delCT
  hgvsp: ENSP00000349634.4:p.Leu204GlyfsTer2
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.327_328delCT
  hgvsp: ENSP00000476393.1:p.Leu110GlyfsTer2
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.610_611delCT
  hgvsp: ENSP00000348242.6:p.Leu204GlyfsTer2
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.718_719delCT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.610_611delCT
  hgvsp: ENSP00000391176.1:p.Leu204GlyfsTer2
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.610_611delCT
  hgvsp: ENSP00000358984.3:p.Leu204GlyfsTer2
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.193_194delCT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.102_103delCT
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.610_611delCT
  hgvsp: ENSP00000332013.5:p.Leu204GlyfsTer2
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.310_311delCT
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu204GlyfsTer2
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: GTC
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

20-62364598-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364598
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364598
    reference: chr 20
allele count: 8
allele frequency: 6.658343736995423e-5
allele num: 120150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.612G>T
  hgvsp: ENST00000369967.3:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.312G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.104G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.612G>T
  hgvsp: ENST00000448100.2:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.612G>T
  hgvsp: ENST00000328969.5:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.720G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.195G>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.329G>T
  hgvsp: ENST00000490623.2:c.329G>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.612G>T
  hgvsp: ENST00000355969.6:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.612G>T
  hgvsp: ENST00000357119.4:c.612G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu204Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

20-62364609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364609
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364609
    reference: chr 20
allele count: 1
allele frequency: 8.323345318950592e-6
allele num: 120144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.731G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.623G>A
  hgvsp: ENSP00000358984.3:p.Arg208His
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.623G>A
  hgvsp: ENSP00000348242.6:p.Arg208His
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.623G>A
  hgvsp: ENSP00000332013.5:p.Arg208His
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.623G>A
  hgvsp: ENSP00000349634.4:p.Arg208His
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.115G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.206G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.623G>A
  hgvsp: ENSP00000391176.1:p.Arg208His
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.323G>A
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.340G>A
  hgvsp: ENSP00000476393.1:p.Arg114His
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg208His
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

20-62364617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364617
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364617
    reference: chr 20
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.348C>T
  hgvsp: ENSP00000476393.1:p.Gln117Ter
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.631C>T
  hgvsp: ENSP00000358984.3:p.Gln211Ter
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.631C>T
  hgvsp: ENSP00000391176.1:p.Gln211Ter
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.123C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.739C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.631C>T
  hgvsp: ENSP00000332013.5:p.Gln211Ter
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.631C>T
  hgvsp: ENSP00000349634.4:p.Gln211Ter
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.631C>T
  hgvsp: ENSP00000348242.6:p.Gln211Ter
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.331C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.214C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln211Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

20-62364618-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364618
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364618
    reference: chr 20
allele count: 1
allele frequency: 8.324453915823122e-6
allele num: 120128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.632A>G
  hgvsp: ENSP00000358984.3:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.215A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.632A>G
  hgvsp: ENSP00000349634.4:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.632A>G
  hgvsp: ENSP00000332013.5:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.632A>G
  hgvsp: ENSP00000348242.6:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.349A>G
  hgvsp: ENSP00000476393.1:p.Gln117Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.332A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.124A>G
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.632A>G
  hgvsp: ENSP00000391176.1:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.740A>G
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3515
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln211Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-62364636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364636
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364636
    reference: chr 20
allele count: 2
allele frequency: 1.67260441233044e-5
allele num: 119574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.233C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.650C>T
  hgvsp: ENSP00000391176.1:p.Ser217Phe
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.650C>T
  hgvsp: ENSP00000332013.5:p.Ser217Phe
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.367C>T
  hgvsp: ENSP00000476393.1:p.Ser123Phe
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.650C>T
  hgvsp: ENSP00000358984.3:p.Ser217Phe
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.650C>T
  hgvsp: ENSP00000348242.6:p.Ser217Phe
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.650C>T
  hgvsp: ENSP00000349634.4:p.Ser217Phe
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.758C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.350C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.142C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser217Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

20-62364638-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364638
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364638
    reference: chr 20
allele count: 2
allele frequency: 1.67313612635524e-5
allele num: 119536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.652C>T
  hgvsp: ENST00000357119.4:c.652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.652C>T
  hgvsp: ENST00000369967.3:c.652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.352C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.760C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.369C>T
  hgvsp: ENST00000490623.2:c.369C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.652C>T
  hgvsp: ENST00000448100.2:c.652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.652C>T
  hgvsp: ENST00000355969.6:c.652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.144C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.652C>T
  hgvsp: ENST00000328969.5:c.652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.235C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu218Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

20-62364645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62364645
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 62364645
    reference: chr 20
allele count: 1
allele frequency: 8.381105635455429e-6
allele num: 119316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000391176
  ensembl transcript: ENST00000448100
  gene symbol: ZGPAT
  hgvsc: ENST00000448100.2:c.659C>T
  hgvsp: ENSP00000391176.1:p.Ala220Val
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000472711
  gene symbol: ZGPAT
  hgvsc: ENST00000472711.1:n.359C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000273154
  ensembl protein: ENSP00000476393
  ensembl transcript: ENST00000490623
  gene symbol: RP4-583P15.15
  hgvsc: ENST00000490623.2:c.376C>T
  hgvsp: ENSP00000476393.1:p.Ala126Val
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000349634
  ensembl transcript: ENST00000357119
  gene symbol: ZGPAT
  hgvsc: ENST00000357119.4:c.659C>T
  hgvsp: ENSP00000349634.4:p.Ala220Val
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000478385
  gene symbol: ZGPAT
  hgvsc: ENST00000478385.1:n.242C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000348242
  ensembl transcript: ENST00000355969
  gene symbol: ZGPAT
  hgvsc: ENST00000355969.6:c.659C>T
  hgvsp: ENSP00000348242.6:p.Ala220Val
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000358984
  ensembl transcript: ENST00000369967
  gene symbol: ZGPAT
  hgvsc: ENST00000369967.3:c.659C>T
  hgvsp: ENSP00000358984.3:p.Ala220Val
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000468235
  gene symbol: ZGPAT
  hgvsc: ENST00000468235.1:n.151C>T
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197114
  ensembl protein: ENSP00000332013
  ensembl transcript: ENST00000328969
  gene symbol: ZGPAT
  hgvsc: ENST00000328969.5:c.659C>T
  hgvsp: ENSP00000332013.5:p.Ala220Val
  variant of: http://identifiers.org/hgnc/15948
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197114
  ensembl transcript: ENST00000477340
  gene symbol: ZGPAT
  hgvsc: ENST00000477340.1:n.767C>T
  variant of: http://identifiers.org/hgnc/15948
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23972
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala220Val
num of homozygotes: 0
population: Other
reference allele: C

GenotypeQuality
all individuals: 3804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 2.53014e6

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 1.025e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.337e0

QD
type: SiteQuality
SIO_000300: 1.398e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 2.53014e6

QD
type: SiteQuality
SIO_000300: 1.398e1

FS
type: SiteQuality
SIO_000300: 1.025e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.337e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 22280
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-3

DP
type: SiteQuality
SIO_000300: 2.530815e6

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.717e0

FS
type: SiteQuality
SIO_000300: 8.38e-1

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

DP
type: SiteQuality
SIO_000300: 2.531177e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

FS
type: SiteQuality
SIO_000300: 3.894e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.482e0

QD
type: SiteQuality
SIO_000300: 2.294e1

VQSLOD
type: SiteQuality
SIO_000300: -2.522e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3779
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.531997e6

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 1.729e0

QD
type: SiteQuality
SIO_000300: 1.404e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11809
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6171
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.243e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 5.947e0

DP
type: SiteQuality
SIO_000300: 2.53267e6

VQSLOD
type: SiteQuality
SIO_000300: -1.456e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512172992590352e-5
allele num: 66130
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
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ReadPosRankSum
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SIO_000300: 5.36e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 2.309e0

MQ
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SIO_000300: 5.964e1

ReadPosRankSum
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SIO_000300: -5.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511990081345066e-5
allele num: 66138
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.597e0

InbreedingCoeff
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SIO_000300: 1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.927e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

FS
type: SiteQuality
SIO_000300: 7.775e0

DP
type: SiteQuality
SIO_000300: 2.533148e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.97e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.533717e6

FS
type: SiteQuality
SIO_000300: 6.374e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.862e1

VQSLOD
type: SiteQuality
SIO_000300: -1.913e0

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.63460140537921e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.534271e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

Other
type: Population
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VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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SIO_000300: 1.192e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.512630464377553e-5
allele num: 66110
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European (Finnish)
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6084
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.210104371502042e-4
allele num: 66110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 4.1e0

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.486e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

DP
type: SiteQuality
SIO_000300: 2.535867e6

GenotypeQuality
all individuals: 1062
bin: 3.75e1
variant carriers: 122

GenotypeQuality
all individuals: 2982
bin: 9.25e1
variant carriers: 58

GenotypeQuality
all individuals: 1180
bin: 2.25e1
variant carriers: 143

GenotypeQuality
all individuals: 784
bin: 1.25e1
variant carriers: 127

GenotypeQuality
all individuals: 803
bin: 1.75e1
variant carriers: 125

GenotypeQuality
all individuals: 1023
bin: 3.25e1
variant carriers: 128

GenotypeQuality
all individuals: 1130
bin: 4.75e1
variant carriers: 109

GenotypeQuality
all individuals: 4119
bin: 2.5e0
variant carriers: 93

GenotypeQuality
all individuals: 2208
bin: 8.75e1
variant carriers: 71

GenotypeQuality
all individuals: 1010
bin: 4.25e1
variant carriers: 119

GenotypeQuality
all individuals: 15368
bin: 9.75e1
variant carriers: 648

GenotypeQuality
all individuals: 5000
bin: 6.75e1
variant carriers: 92

GenotypeQuality
all individuals: 9746
bin: 6.25e1
variant carriers: 103

GenotypeQuality
all individuals: 1163
bin: 5.25e1
variant carriers: 93

GenotypeQuality
all individuals: 3567
bin: 8.25e1
variant carriers: 78

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 109

European (Non-Finnish)
type: Population
allele count: 878
allele frequency: 1.459490009641278e-2
allele num: 60158
num of homozygotes: 0

Other
type: Population
allele count: 21
allele frequency: 2.625e-2
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 192
allele frequency: 2.078371941978783e-2
allele num: 9238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 476
allele frequency: 9.011737978038621e-2
allele num: 5282
num of homozygotes: 0

South Asian
type: Population
allele count: 91
allele frequency: 5.908323594338398e-3
allele num: 15402
num of homozygotes: 0

Latino
type: Population
allele count: 232
allele frequency: 2.381441182508725e-2
allele num: 9742
num of homozygotes: 0

East Asian
type: Population
allele count: 190
allele frequency: 2.566873817887057e-2
allele num: 7402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.8e-1

DP
type: SiteQuality
SIO_000300: 2.987857e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.718e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.74e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 2.39324e2

VQSLOD
type: SiteQuality
SIO_000300: -2.608e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.78e-2

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66076
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.418748e6

FS
type: SiteQuality
SIO_000300: 3.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 4117
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66076
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.373e0

DP
type: SiteQuality
SIO_000300: 2.418748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 20170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513546238837597e-5
allele num: 66070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0195e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 2.415902e6

MQRankSum
type: SiteQuality
SIO_000300: -1.058e0

VQSLOD
type: SiteQuality
SIO_000300: -1.532e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 4788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20171
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 5056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.572561363154868e-4
allele num: 66082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.825e0

DP
type: SiteQuality
SIO_000300: 2.417018e6

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12575
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variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6536
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20148
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 5048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.631411711302769e-4
allele num: 66090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.528e0

DP
type: SiteQuality
SIO_000300: 2.415838e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.205e1

FS
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
all individuals: 3685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 20134
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variant carriers: 1

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 12625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6533
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513408801985592e-5
allele num: 66076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.154999999999999e0

DP
type: SiteQuality
SIO_000300: 2.41435e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 2.28e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
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allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.466e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

DP
type: SiteQuality
SIO_000300: 2.412042e6

BaseQRankSum
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SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
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SIO_000300: 1.26e0

ClippingRankSum
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SIO_000300: -1.187e0

VQSLOD
type: SiteQuality
SIO_000300: -2.952e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.411964e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
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SIO_000300: 1.23e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
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SIO_000300: 5.23e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
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SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 7.537e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66078
num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

InbreedingCoeff
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SIO_000300: 1.1e-3

ReadPosRankSum
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SIO_000300: 1.17e0

BaseQRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 8.5e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
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SIO_000300: 1.12e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

FS
type: SiteQuality
SIO_000300: 1.591e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.174e0

MQRankSum
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DP
type: SiteQuality
SIO_000300: 2.411498e6

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

DP
type: SiteQuality
SIO_000300: 2.411452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.027e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

VQSLOD
type: SiteQuality
SIO_000300: -3.459e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.513546238837597e-5
allele num: 66070
num of homozygotes: 0

South Asian
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East Asian
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Other
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African
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MQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

DP
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66070
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.657e0

VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: 1.1e-3

MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.874e1

DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
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Other
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European (Finnish)
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allele num: 6606
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South Asian
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
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DP
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QD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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allele num: 66032
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South Asian
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Latino
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European (Finnish)
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allele num: 6606
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Other
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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Latino
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Other
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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DP
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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Latino
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European (Non-Finnish)
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African
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South Asian
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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DP
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VQSLOD
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FS
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

ReadPosRankSum
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SIO_000300: 3.69e-1

DP
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SIO_000300: 2.396168e6

MQRankSum
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SIO_000300: 3.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.531065315246348e-5
allele num: 65314
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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Latino
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allele frequency: 0.0e0
allele num: 11472
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South Asian
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allele num: 16474
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ClippingRankSum
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SIO_000300: -7.25e-1

MQRankSum
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -8.0e-4

VQSLOD
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQRankSum
type: SiteQuality
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.699e0

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65096
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8500
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Latino
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allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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African
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.381457e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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Other
type: Population
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.08384987818793e-5
allele num: 64854
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
type: SiteQuality
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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num of homozygotes: 0

South Asian
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Other
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African
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East Asian
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 9942
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Other
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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East Asian
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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QD
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.473e0

VQSLOD
type: SiteQuality
SIO_000300: -9.009e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.278145695364238e-4
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.048e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.5842e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 2.347167e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.823e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

DP
type: SiteQuality
SIO_000300: 2.342486e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.887e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.667e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548994702438118e-5
allele num: 64558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 8.73e0

DP
type: SiteQuality
SIO_000300: 2.340983e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.14e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.823043266893534e-4
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64490
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.366e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e-1

DP
type: SiteQuality
SIO_000300: 2.336416e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102121851346321e-5
allele num: 64472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.33509e6

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.186802753382388e-4
allele num: 8426
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9778
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64348
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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FS
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.331181e6

BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
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South Asian
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allele frequency: 1.994415636218588e-4
allele num: 15042
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 874
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.612262468482873e-5
allele num: 65044
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 1.006e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28965
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.073329645337759e-5
allele num: 65076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

FS
type: SiteQuality
SIO_000300: 1.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.413e0

DP
type: SiteQuality
SIO_000300: 1.575711e6

QD
type: SiteQuality
SIO_000300: 1.462e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 31587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.965151316651382e-4
allele num: 15266
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.605e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 7.154e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -8.86e-1

QD
type: SiteQuality
SIO_000300: 1.566e1

DP
type: SiteQuality
SIO_000300: 1.594785e6

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1963
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variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.782821365681862e-5
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.605091e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.001e-1

FS
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
all individuals: 9354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2268
bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.222905010853282e-4
allele num: 65418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

DP
type: SiteQuality
SIO_000300: 1.624607e6

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.296e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.335e0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
all individuals: 1511
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
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variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
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variant carriers: 0

GenotypeQuality
all individuals: 34333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.115e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.788e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.626758e6

FS
type: SiteQuality
SIO_000300: 8.01e0

QD
type: SiteQuality
SIO_000300: 1.201e1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.75e1
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GenotypeQuality
all individuals: 1120
bin: 2.25e1
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GenotypeQuality
all individuals: 2302
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
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GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
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GenotypeQuality
all individuals: 35618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 37
allele frequency: 2.307884231536926e-3
allele num: 16032
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.674480910917615e-4
allele num: 65692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

QD
type: SiteQuality
SIO_000300: 1.319e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.778e0

FS
type: SiteQuality
SIO_000300: 1.214e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.64539e6

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
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GenotypeQuality
all individuals: 927
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 36053
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
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GenotypeQuality
all individuals: 69
bin: 4.25e1
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GenotypeQuality
all individuals: 9566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
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GenotypeQuality
all individuals: 882
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

QD
type: SiteQuality
SIO_000300: 6.7e-1

DP
type: SiteQuality
SIO_000300: 1.64761e6

FS
type: SiteQuality
SIO_000300: 1.555e0

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.5e-1

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36677
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
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GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
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GenotypeQuality
all individuals: 73
bin: 5.25e1
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GenotypeQuality
all individuals: 3544
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
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GenotypeQuality
all individuals: 3381
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GenotypeQuality
all individuals: 45
bin: 7.5e0
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GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.939e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.01e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.657309e6

GenotypeQuality
all individuals: 2267
bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.21333454666788e-4
allele num: 65934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-1

FS
type: SiteQuality
SIO_000300: 1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.658378e6

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.657558e6

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

FS
type: SiteQuality
SIO_000300: 1.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

GenotypeQuality
all individuals: 874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.655788e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.089e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.194e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

DP
type: SiteQuality
SIO_000300: 1.655493e6

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050826774055769e-5
allele num: 65556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.637044e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.868e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9333
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052409877598364e-5
allele num: 65522
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.868e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.635254e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 587
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0