X-107439827-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439827
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 32962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-18G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-18G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-18G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-18G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-18G>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-107439836-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439836
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 27949
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-27T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-27T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-27T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-27T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-27T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-107439841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439841
    reference: chr 0
allele count: 1
allele frequency: 3.907776475185619e-5
allele num: 25590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-32C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-32C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-32C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-32C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-32C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-107439850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439850
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439850
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 20659
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-41G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-41G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-41G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-41G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-41G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1341
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3490
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

X-107439853-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439853
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439853
    reference: chr 0
allele count: 2
allele frequency: 9.869232667160128e-5
allele num: 20265
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-44C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-44C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-44C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-44C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-44C>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-107439855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439855
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439855
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 19647
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-46G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-46G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-46G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-46G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-46G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS

X-107439856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107439856
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107439856
    reference: chr 0
allele count: 2
allele frequency: 1.027115858668858e-4
allele num: 19472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.835-47C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.838-47C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.829-47C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.835-47C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.835-47C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-107446107-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446107
    reference: chr 0
allele count: 1
allele frequency: 1.148804668742174e-5
allele num: 87047
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+51A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+51A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+51A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+51A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+51A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-107446112-TCCAATCAGAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446102
    reference: chr 0
allele count: 1
allele frequency: 1.148712293518965e-5
allele num: 87054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: TCCAATCAGAC
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

X-107446115-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446115
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446115
    reference: chr 0
allele count: 1
allele frequency: 1.148527587632655e-5
allele num: 87068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+43T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+43T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+43T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+43T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+43T>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39520
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-107446116-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446116
    reference: chr 0
allele count: 1
allele frequency: 1.148369315571888e-5
allele num: 87080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+42T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+42T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+42T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+42T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+42T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

X-107446121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446121
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446121
    reference: chr 0
allele count: 1
allele frequency: 1.147947469923776e-5
allele num: 87112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+37T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+37T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+37T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+37T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+37T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1368
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-107446124-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446124
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446124
    reference: chr 0
allele count: 2
allele frequency: 2.295947652393526e-5
allele num: 87110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+34G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+34G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+34G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+34G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+34G>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-107446126-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446126
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446126
    reference: chr 0
allele count: 373
allele frequency: 4.280713834853962e-3
allele num: 87135
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+32A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+32A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+32A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+32A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+32A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 8
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-107446128-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446128
    reference: chr 0
allele count: 1
allele frequency: 1.147420598494584e-5
allele num: 87152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+30A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+30A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+30A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+30A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+30A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-107446144-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446144
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446144
    reference: chr 0
allele count: 1
allele frequency: 1.14502942725628e-5
allele num: 87334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+14T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+14T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+14T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+14T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+14T>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-107446145-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446145
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446145
    reference: chr 0
allele count: 2
allele frequency: 2.289980191671342e-5
allele num: 87337
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.828+13A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.834+13A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.834+13A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.834+13A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.837+13A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39450
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

X-107446159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446159
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446159
    reference: chr 0
allele count: 20
allele frequency: 2.285688163563845e-4
allele num: 87501
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.836C>T
  hgvsp: ENSP00000361290.4:p.Pro279Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.833C>T
  hgvsp: ENSP00000445236.1:p.Pro278Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.827C>T
  hgvsp: ENSP00000378340.2:p.Pro276Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.833C>T
  hgvsp: ENSP00000443707.1:p.Pro278Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.833C>T
  hgvsp: ENSP00000334733.7:p.Pro278Leu
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2650
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro279Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-107446164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446164
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446164
    reference: chr 0
allele count: 3
allele frequency: 3.427200548352088e-5
allele num: 87535
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.828C>T
  hgvsp: ENST00000545689.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.831C>T
  hgvsp: ENST00000372216.4:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.828C>T
  hgvsp: ENST00000334504.7:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.828C>T
  hgvsp: ENST00000538570.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.822C>T
  hgvsp: ENST00000394872.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly277Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-107446169-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446169
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446169
    reference: chr 0
allele count: 2
allele frequency: 2.284200187304415e-5
allele num: 87558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.817C>T
  hgvsp: ENSP00000378340.2:p.Pro273Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.826C>T
  hgvsp: ENSP00000361290.4:p.Pro276Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.823C>T
  hgvsp: ENSP00000443707.1:p.Pro275Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.823C>T
  hgvsp: ENSP00000445236.1:p.Pro275Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.823C>T
  hgvsp: ENSP00000334733.7:p.Pro275Ser
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro276Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

X-107446171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446171
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446171
    reference: chr 0
allele count: 1
allele frequency: 1.142139226771743e-5
allele num: 87555
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.815C>T
  hgvsp: ENSP00000378340.2:p.Pro272Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.821C>T
  hgvsp: ENSP00000445236.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.821C>T
  hgvsp: ENSP00000443707.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.824C>T
  hgvsp: ENSP00000361290.4:p.Pro275Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.821C>T
  hgvsp: ENSP00000334733.7:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 177
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genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 2416
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genotype depth: GenotypeDepth
  all individuals: 1869
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genotype depth: GenotypeDepth
  all individuals: 5204
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genotype depth: GenotypeDepth
  all individuals: 2393
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2458
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 39440
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro275Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

X-107446174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446174
    reference: chr 0
allele count: 1
allele frequency: 1.142060963214216e-5
allele num: 87561
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.821G>A
  hgvsp: ENSP00000361290.4:p.Gly274Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.812G>A
  hgvsp: ENSP00000378340.2:p.Gly271Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.818G>A
  hgvsp: ENSP00000445236.1:p.Gly273Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.818G>A
  hgvsp: ENSP00000334733.7:p.Gly273Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.818G>A
  hgvsp: ENSP00000443707.1:p.Gly273Asp
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3744
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 39439
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1409
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genotype quality: GenotypeQuality
  all individuals: 223
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly274Asp
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-107446199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446199
    reference: chr 0
allele count: 1
allele frequency: 1.142321883460322e-5
allele num: 87541
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.796C>T
  hgvsp: ENSP00000361290.4:p.Pro266Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.787C>T
  hgvsp: ENSP00000378340.2:p.Pro263Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.793C>T
  hgvsp: ENSP00000334733.7:p.Pro265Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.793C>T
  hgvsp: ENSP00000445236.1:p.Pro265Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.793C>T
  hgvsp: ENSP00000443707.1:p.Pro265Ser
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4751
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
hgvs: p.Pro266Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-107446200-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446200
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446200
    reference: chr 0
allele count: 1
allele frequency: 1.142674314966748e-5
allele num: 87514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.792G>A
  hgvsp: ENST00000545689.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.786G>A
  hgvsp: ENST00000394872.2:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.792G>A
  hgvsp: ENST00000538570.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.795G>A
  hgvsp: ENST00000372216.4:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.792G>A
  hgvsp: ENST00000334504.7:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2393
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly265Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-107446211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446211
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446211
    reference: chr 0
allele count: 1
allele frequency: 1.143209904770615e-5
allele num: 87473
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781G>A
  hgvsp: ENSP00000443707.1:p.Gly261Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784G>A
  hgvsp: ENSP00000361290.4:p.Gly262Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775G>A
  hgvsp: ENSP00000378340.2:p.Gly259Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781G>A
  hgvsp: ENSP00000334733.7:p.Gly261Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781G>A
  hgvsp: ENSP00000445236.1:p.Gly261Ser
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly262Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-107446227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446227
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446227
    reference: chr 0
allele count: 1
allele frequency: 1.1446755417177e-5
allele num: 87361
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781-16T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784-16T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781-16T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781-16T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775-16T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

X-107446236-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446236
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446236
    reference: chr 0
allele count: 3
allele frequency: 3.436308030651867e-5
allele num: 87303
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784-25T>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781-25T>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781-25T>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781-25T>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775-25T>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-107446248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446248
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446248
    reference: chr 0
allele count: 1
allele frequency: 1.146999449440264e-5
allele num: 87184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775-37C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784-37C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781-37C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781-37C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781-37C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

X-107446259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446259
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446259
    reference: chr 0
allele count: 2
allele frequency: 2.299590672860231e-5
allele num: 86972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775-48G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781-48G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784-48G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781-48G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781-48G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39407
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-107446260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446260
    reference: chr 0
allele count: 7
allele frequency: 8.050418621768332e-5
allele num: 86952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781-49C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775-49C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781-49C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784-49C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781-49C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-107446263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107446263
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107446263
    reference: chr 0
allele count: 191
allele frequency: 2.198029828760818e-3
allele num: 86896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.775-52G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.781-52G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.781-52G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.784-52G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.781-52G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-107447546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447546
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447546
    reference: chr 0
allele count: 3
allele frequency: 4.062123407309114e-5
allele num: 73853
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.780+4G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.774+4G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.780+4G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.780+4G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.783+4G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10838
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
hgvs: c.783+4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-107447556-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447556
    reference: chr 0
allele count: 1
allele frequency: 1.285049731424606e-5
allele num: 77818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.774A>G
  hgvsp: ENST00000538570.1:c.774A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.774A>G
  hgvsp: ENST00000545689.1:c.774A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.774A>G
  hgvsp: ENST00000334504.7:c.774A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.768A>G
  hgvsp: ENST00000394872.2:c.768A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.777A>G
  hgvsp: ENST00000372216.4:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44090
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 396
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genotype quality: GenotypeQuality
  all individuals: 462
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genotype quality: GenotypeQuality
  all individuals: 8043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly259Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

X-107447565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447565
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447565
    reference: chr 0
allele count: 15
allele frequency: 1.879793473357061e-4
allele num: 79796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.759G>A
  hgvsp: ENST00000394872.2:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.765G>A
  hgvsp: ENST00000334504.7:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.768G>A
  hgvsp: ENST00000372216.4:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.765G>A
  hgvsp: ENST00000538570.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.765G>A
  hgvsp: ENST00000545689.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45220
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 42
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 357
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 206
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2520
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genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly256Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

X-107447573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447573
    reference: chr 0
allele count: 1
allele frequency: 1.232559286101662e-5
allele num: 81132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.757C>T
  hgvsp: ENSP00000445236.1:p.Pro253Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.760C>T
  hgvsp: ENSP00000361290.4:p.Pro254Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.751C>T
  hgvsp: ENSP00000378340.2:p.Pro251Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.757C>T
  hgvsp: ENSP00000334733.7:p.Pro253Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.757C>T
  hgvsp: ENSP00000443707.1:p.Pro253Ser
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 45781
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 416
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  variant carriers: 0
hgvs: p.Pro254Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-107447582-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447582
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447582
    reference: chr 0
allele count: 1
allele frequency: 1.219155369160246e-5
allele num: 82024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.742A>T
  hgvsp: ENSP00000378340.2:p.Met248Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.748A>T
  hgvsp: ENSP00000445236.1:p.Met250Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.748A>T
  hgvsp: ENSP00000334733.7:p.Met250Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.751A>T
  hgvsp: ENSP00000361290.4:p.Met251Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.748A>T
  hgvsp: ENSP00000443707.1:p.Met250Leu
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met251Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

X-107447592-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447592
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447592
    reference: chr 0
allele count: 14
allele frequency: 1.695962398090831e-4
allele num: 82549
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.732G>C
  hgvsp: ENSP00000378340.2:p.Glu244Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.738G>C
  hgvsp: ENSP00000334733.7:p.Glu246Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.738G>C
  hgvsp: ENSP00000445236.1:p.Glu246Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.741G>C
  hgvsp: ENSP00000361290.4:p.Glu247Asp
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.738G>C
  hgvsp: ENSP00000443707.1:p.Glu246Asp
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45973
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
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genotype depth: GenotypeDepth
  all individuals: 986
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genotype depth: GenotypeDepth
  all individuals: 1074
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genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2686
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genotype quality: GenotypeQuality
  all individuals: 527
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genotype quality: GenotypeQuality
  all individuals: 336
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  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 395
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genotype quality: GenotypeQuality
  all individuals: 4815
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genotype quality: GenotypeQuality
  all individuals: 49
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu247Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-107447600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447600
    reference: chr 0
allele count: 2
allele frequency: 2.418525908458794e-5
allele num: 82695
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.724A>G
  hgvsp: ENSP00000378340.2:p.Thr242Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.730A>G
  hgvsp: ENSP00000445236.1:p.Thr244Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.733A>G
  hgvsp: ENSP00000361290.4:p.Thr245Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.730A>G
  hgvsp: ENSP00000334733.7:p.Thr244Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.730A>G
  hgvsp: ENSP00000443707.1:p.Thr244Ala
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45180
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 371
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
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genotype quality: GenotypeQuality
  all individuals: 4850
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 521
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr245Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-107447604-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447604
    reference: chr 0
allele count: 8
allele frequency: 9.674805596875038e-5
allele num: 82689
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.726A>C
  hgvsp: ENST00000334504.7:c.726A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.729A>C
  hgvsp: ENST00000372216.4:c.729A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.726A>C
  hgvsp: ENST00000545689.1:c.726A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.726A>C
  hgvsp: ENST00000538570.1:c.726A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.720A>C
  hgvsp: ENST00000394872.2:c.720A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1526
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44841
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 100
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 332
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genotype quality: GenotypeQuality
  all individuals: 369
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genotype quality: GenotypeQuality
  all individuals: 437
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro243Pro
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-107447636-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447636
    reference: chr 0
allele count: 1
allele frequency: 1.216471017578006e-5
allele num: 82205
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.688G>T
  hgvsp: ENSP00000378340.2:p.Val230Phe
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.697G>T
  hgvsp: ENSP00000361290.4:p.Val233Phe
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.694G>T
  hgvsp: ENSP00000443707.1:p.Val232Phe
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.694G>T
  hgvsp: ENSP00000334733.7:p.Val232Phe
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.694G>T
  hgvsp: ENSP00000445236.1:p.Val232Phe
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val233Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-107447636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447636
    reference: chr 0
allele count: 1
allele frequency: 1.216471017578006e-5
allele num: 82205
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.694G>A
  hgvsp: ENSP00000334733.7:p.Val232Ile
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.694G>A
  hgvsp: ENSP00000445236.1:p.Val232Ile
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.688G>A
  hgvsp: ENSP00000378340.2:p.Val230Ile
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.694G>A
  hgvsp: ENSP00000443707.1:p.Val232Ile
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.697G>A
  hgvsp: ENSP00000361290.4:p.Val233Ile
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 505
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val233Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS

X-107447650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447650
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447650
    reference: chr 0
allele count: 1
allele frequency: 1.226256606457467e-5
allele num: 81549
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-8T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-8T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-8T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-8T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-8T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 327
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  variant carriers: 1
hgvs: c.691-8T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-107447656-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447656
    reference: chr 0
allele count: 1
allele frequency: 1.231921551235617e-5
allele num: 81174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-14A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-14A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-14A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-14A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-14A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS

X-107447662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447662
    reference: chr 0
allele count: 1
allele frequency: 1.238865694570052e-5
allele num: 80719
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-20T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-20T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-20T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-20T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-20T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36828
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-107447671-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447671
    reference: chr 0
allele count: 3
allele frequency: 3.763832082904675e-5
allele num: 79706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-29T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-29T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-29T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-29T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-29T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4562
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34870
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1012
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2029
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genotype quality: GenotypeQuality
  all individuals: 326
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genotype quality: GenotypeQuality
  all individuals: 1233
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genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-107447675-ACAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447675
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447671
    reference: chr 0
allele count: 1090
allele frequency: 1.367525656788698e-2
allele num: 79706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-37_688-34delATTG
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-37_682-34delATTG
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-37_688-34delATTG
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-37_688-34delATTG
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-37_691-34delATTG
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4807
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  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 18
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  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 459
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33973
  bin: 2.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
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  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 2.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 162
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  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 6902
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  variant carriers: 8
genotype depth: GenotypeDepth
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  variant carriers: 49
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
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  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 13
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  variant carriers: 12
genotype quality: GenotypeQuality
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  variant carriers: 6
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 889
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1976
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  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 10173
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 153
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  variant carriers: 11
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 11
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 35796
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genotype quality: GenotypeQuality
  all individuals: 1175
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  variant carriers: 879
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.75e1
  variant carriers: 17
num of homozygotes: 39
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: ACAAT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-107447682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447682
    reference: chr 0
allele count: 219
allele frequency: 2.778976220084765e-3
allele num: 78806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-40G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-40G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-40G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-40G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-40G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32545
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 7472
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6837
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  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 41
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  variant carriers: 17
genotype depth: GenotypeDepth
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  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 413
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  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 9.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 1959
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 33778
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 209
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genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
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genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 406
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
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  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 2.75e1
  variant carriers: 2
num of homozygotes: 3
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

X-107447685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447685
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447685
    reference: chr 0
allele count: 3180
allele frequency: 4.054570954991712e-2
allele num: 78430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-43G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-43G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-43G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-43G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-43G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 2.75e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 332
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 1.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 30562
  bin: 2.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 7.5e0
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 1.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 208
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 4.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 11155
  bin: 2.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 4.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 6.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 5.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 2.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 9.75e1
  variant carriers: 2202
num of homozygotes: 85
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-107447686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447686
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447686
    reference: chr 0
allele count: 1
allele frequency: 1.276226453621931e-5
allele num: 78356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-44C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-44C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-44C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.682-44C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-44C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31151
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
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genotype quality: GenotypeQuality
  all individuals: 584
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genotype quality: GenotypeQuality
  all individuals: 1803
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33976
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
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genotype quality: GenotypeQuality
  all individuals: 193
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genotype quality: GenotypeQuality
  all individuals: 1602
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genotype quality: GenotypeQuality
  all individuals: 363
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11613
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-107447688-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447688
    reference: chr 0
allele count: 1
allele frequency: 1.277596075224857e-5
allele num: 78272
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-46G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+43G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-46G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-46G>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-46G>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34059
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1936
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

X-107447689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447689
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447689
    reference: chr 0
allele count: 15
allele frequency: 1.920368710792472e-4
allele num: 78110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-47G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-47G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-47G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+42G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-47G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6996
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8040
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
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  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 421
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1942
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1236
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genotype quality: GenotypeQuality
  all individuals: 145
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-107447690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447690
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447690
    reference: chr 0
allele count: 1
allele frequency: 1.282297877797012e-5
allele num: 77985
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-48C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+41C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-48C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-48C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-48C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1914
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.75e1
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-107447694-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447694
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447694
    reference: chr 0
allele count: 4
allele frequency: 5.130375671758565e-5
allele num: 77967
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+37A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-52A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-52A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-52A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-52A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-107447700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447700
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447700
    reference: chr 0
allele count: 1
allele frequency: 1.288244766505636e-5
allele num: 77625
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-58T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+31T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-58T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-58T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-58T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-107447704-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447704
    reference: chr 0
allele count: 3
allele frequency: 3.882741215298e-5
allele num: 77265
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-62C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-62C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-62C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+27C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-62C>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31597
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-107447707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447707
    reference: chr 0
allele count: 1
allele frequency: 1.297134629603207e-5
allele num: 77093
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-65C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-65C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.681+24C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-65C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-65C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7270
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 985
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genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
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genotype quality: GenotypeQuality
  all individuals: 35562
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 342
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 675
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 655
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genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

X-107447733-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447733
    reference: chr 0
allele count: 1
allele frequency: 1.339943722363661e-5
allele num: 74630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-91T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.679T>C
  hgvsp: ENSP00000378340.2:p.Phe227Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-91T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-91T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-91T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 162
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  variant carriers: 0
hgvs: p.Phe227Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-107447740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447740
    reference: chr 0
allele count: 1
allele frequency: 1.370482546904765e-5
allele num: 72967
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.672C>T
  hgvsp: ENST00000394872.2:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-98C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-98C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-98C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-98C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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genotype depth: GenotypeDepth
  all individuals: 1431
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 353
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  variant carriers: 0
hgvs: p.Asp224Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-107447763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447763
    reference: chr 0
allele count: 1
allele frequency: 1.520450053215752e-5
allele num: 65770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-121G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-121G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.649G>A
  hgvsp: ENSP00000378340.2:p.Gly217Ser
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-121G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-121G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 236
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  variant carriers: 0
hgvs: p.Gly217Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-107447779-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447779
    reference: chr 0
allele count: 1
allele frequency: 1.680757012958637e-5
allele num: 59497
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-137T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-137T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-137T>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.633T>G
  hgvsp: ENSP00000378340.2:p.Phe211Leu
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-137T>G
  variant of: http://identifiers.org/hgnc/2208
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe211Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-107447782-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447782
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447782
    reference: chr 0
allele count: 1
allele frequency: 1.737981855469429e-5
allele num: 57538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-140G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-140G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-140G>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.630G>C
  hgvsp: ENSP00000378340.2:p.Leu210Phe
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-140G>C
  variant of: http://identifiers.org/hgnc/2208
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
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hgvs: p.Leu210Phe
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-107447802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447802
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447802
    reference: chr 0
allele count: 1
allele frequency: 2.103270585760858e-5
allele num: 47545
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-160C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-16C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-160C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-160C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
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  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-160C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-107447803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447803
    reference: chr 0
allele count: 3
allele frequency: 6.349878293999365e-5
allele num: 47245
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-161C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-17C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-161C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-161C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-161C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17262
  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-107447821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447821
    reference: chr 0
allele count: 17
allele frequency: 4.379750096612135e-4
allele num: 38815
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-35G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-179G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-179G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-179G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-179G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 115
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 827
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13654
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 4623
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS

X-107447822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447822
    reference: chr 0
allele count: 5
allele frequency: 1.311853911948365e-4
allele num: 38114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-36G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-180G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-180G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-180G>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-180G>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 833
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 295
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genotype quality: GenotypeQuality
  all individuals: 244
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3790
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

X-107447823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447823
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447823
    reference: chr 0
allele count: 1
allele frequency: 2.656536407831469e-5
allele num: 37643
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-181C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-37C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-181C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-181C>T
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-181C>T
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14041
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 295
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genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-107447823-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447823
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447823
    reference: chr 0
allele count: 1
allele frequency: 2.656536407831469e-5
allele num: 37643
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-181C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-37C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-181C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-181C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-181C>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4812
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

X-107447828-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447828
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447828
    reference: chr 0
allele count: 4
allele frequency: 1.110648340969041e-4
allele num: 36015
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-42C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-186C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-186C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-186C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-186C>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22728
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13051
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 290
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13550
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-107447833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447833
    reference: chr 0
allele count: 1
allele frequency: 2.824300279605728e-5
allele num: 35407
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-47A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-191A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-191A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-191A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-191A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-107447835-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107447835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107447835
    reference: chr 0
allele count: 1
allele frequency: 2.85143997718848e-5
allele num: 35070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.688-193A>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-49A>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.691-193A>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.688-193A>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.688-193A>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1266
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

X-107448632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107448632
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107448632
    reference: chr 0
allele count: 1
allele frequency: 1.154881104990241e-5
allele num: 86589
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.690+37A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-846A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.687+37A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.687+37A>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.687+37A>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 389
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-107448638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107448638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107448638
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 86642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.687+31T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-852T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.687+31T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.690+31T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.687+31T>C
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-107448639-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107448639
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107448639
    reference: chr 0
allele count: 1
allele frequency: 1.147987004787106e-5
allele num: 87109
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-853C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.687+30C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.687+30C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.687+30C>G
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.690+30C>G
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

X-107448639-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107448639
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107448639
    reference: chr 0
allele count: 60042
allele frequency: 6.892743574142741e-1
allele num: 87109
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.687+30C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.687+30C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.690+30C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.687+30C>A
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-853C>A
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.75e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.25e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 929
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 42997
  bin: 9.75e1
  variant carriers: 39178
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 821
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 6.75e1
  variant carriers: 309
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 360
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 209
num of homozygotes: 13334
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-107448673-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24107448673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24107448673
    reference: chr 0
allele count: 1
allele frequency: 1.14569847507533e-5
allele num: 87283
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000378340
  ensembl transcript: ENST00000394872
  gene symbol: COL4A6
  hgvsc: ENST00000394872.2:c.626-887T>C
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000443707
  ensembl transcript: ENST00000545689
  gene symbol: COL4A6
  hgvsc: ENST00000545689.1:c.683T>C
  hgvsp: ENSP00000443707.1:p.Val228Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000361290
  ensembl transcript: ENST00000372216
  gene symbol: COL4A6
  hgvsc: ENST00000372216.4:c.686T>C
  hgvsp: ENSP00000361290.4:p.Val229Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000334733
  ensembl transcript: ENST00000334504
  gene symbol: COL4A6
  hgvsc: ENST00000334504.7:c.683T>C
  hgvsp: ENSP00000334733.7:p.Val228Ala
  variant of: http://identifiers.org/hgnc/2208
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197565
  ensembl protein: ENSP00000445236
  ensembl transcript: ENST00000538570
  gene symbol: COL4A6
  hgvsc: ENST00000538570.1:c.683T>C
  hgvsp: ENSP00000445236.1:p.Val228Ala
  variant of: http://identifiers.org/hgnc/2208
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val229Ala
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3495
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 273
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2089
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.63369e5

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.247e1

MQ
type: SiteQuality
SIO_000300: 5.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.45e-2

GenotypeQuality
all individuals: 1016
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3765
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1379
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1541
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.02077e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.13e-2

QD
type: SiteQuality
SIO_000300: 2.442e1

GenotypeQuality
all individuals: 10653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.088991017338625e-4
allele num: 4787
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1399
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 229
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1091
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.031e1

DP
type: SiteQuality
SIO_000300: 7.7216e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

GenotypeQuality
all individuals: 4276
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3061
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4483
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.20339e5

QD
type: SiteQuality
SIO_000300: 2.068e1

GenotypeQuality
all individuals: 239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5093
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 195
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.233139794551139e-4
allele num: 4478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 943
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.711566475672526e-5
allele num: 10297
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3021
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.16e-2

QD
type: SiteQuality
SIO_000300: 1.375e1

DP
type: SiteQuality
SIO_000300: 7.16521e5

FS
type: SiteQuality
SIO_000300: 5.384e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.811e-1

GenotypeQuality
all individuals: 393
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9967
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2973
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 871
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.33e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

DP
type: SiteQuality
SIO_000300: 7.12782e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4534
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 241
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.285191956124314e-4
allele num: 4376
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.372681281618887e-4
allele num: 2965
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 861
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9841
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.11472e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

VQSLOD
type: SiteQuality
SIO_000300: -1.724e0

QD
type: SiteQuality
SIO_000300: 2.709e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

GenotypeQuality
all individuals: 639
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47780
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509661835748792e-4
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.637e1

DP
type: SiteQuality
SIO_000300: 3.689567e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 1371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47783
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075384449940854e-4
allele num: 9299
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9697
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.384e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 2.97e0

MQRankSum
type: SiteQuality
SIO_000300: -8.933999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -6.595e-1

FS
type: SiteQuality
SIO_000300: 3.086e0

MQ
type: SiteQuality
SIO_000300: 5.367e1

DP
type: SiteQuality
SIO_000300: 3.690344e6

GenotypeQuality
all individuals: 631
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4925
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9707
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.994e1

QD
type: SiteQuality
SIO_000300: 1.078e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 2.172e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.824e0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 3.691639e6

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4979
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.029124215292786e-4
allele num: 9717
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e0

FS
type: SiteQuality
SIO_000300: 2.682e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.09e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 3.691749e6

GenotypeQuality
all individuals: 2377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509889778046203e-4
allele num: 6623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47793
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.271e-1

DP
type: SiteQuality
SIO_000300: 3.694665e6

FS
type: SiteQuality
SIO_000300: 3.086e0

QD
type: SiteQuality
SIO_000300: 2.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39523
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.184888368102781e-5
allele num: 47791
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.59e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.563e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 3.697555e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeQuality
all individuals: 2537
bin: 8.25e1
variant carriers: 15

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2631
bin: 6.75e1
variant carriers: 16

GenotypeQuality
all individuals: 519
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.1768859597505e-4
allele num: 8497
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.150075252633842e-4
allele num: 9302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.276675872457946e-5
allele num: 47796
num of homozygotes: 0

South Asian
type: Population
allele count: 367
allele frequency: 3.759860670013318e-2
allele num: 9761
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

DP
type: SiteQuality
SIO_000300: 3.704046e6

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 2.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

VQSLOD
type: SiteQuality
SIO_000300: 6.184e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.106e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 2385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176609012825038e-4
allele num: 8499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47803
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.698e0

MQRankSum
type: SiteQuality
SIO_000300: -1.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.11e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 3.682438e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 1399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39451
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47847
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07515320933233e-4
allele num: 9301
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.857e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 7.518e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.288e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.61e-2

DP
type: SiteQuality
SIO_000300: 3.694502e6

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7181
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9907
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089995193011056e-5
allele num: 47847
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07515320933233e-4
allele num: 9301
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e0

DP
type: SiteQuality
SIO_000300: 3.694905e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 1.852e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.97e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.774e0

QD
type: SiteQuality
SIO_000300: 2.159e1

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.935067727370458e-3
allele num: 9302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088772845953003e-5
allele num: 47875
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509661835748792e-4
allele num: 6624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.745e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 3.701903e6

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

QD
type: SiteQuality
SIO_000300: 1.606e1

GenotypeQuality
all individuals: 2459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39441
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.527618472683369e-4
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10057
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47883
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.39e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.475e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.246e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 3.699705e6

GenotypeQuality
all individuals: 2542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39442
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2395
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.98609731876862e-4
allele num: 10070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47891
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.054e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.6997e6

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

GenotypeQuality
all individuals: 2396
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10073
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47891
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.104e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.699873e6

VQSLOD
type: SiteQuality
SIO_000300: -5.116000000000001e-1

QD
type: SiteQuality
SIO_000300: 3.373e1

MQ
type: SiteQuality
SIO_000300: 5.753e1

GenotypeQuality
all individuals: 2746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47893
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.699972e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 3.257e1

GenotypeQuality
all individuals: 39437
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

DP
type: SiteQuality
SIO_000300: 3.698915e6

FS
type: SiteQuality
SIO_000300: 5.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.136e0

GenotypeQuality
all individuals: 1403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39437
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088598341652917e-5
allele num: 47879
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.697996e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.62e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 6.587e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.096e0

QD
type: SiteQuality
SIO_000300: 3.188e1

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.934432743890324e-5
allele num: 10066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47869
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 3.696628e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.78e-2

QD
type: SiteQuality
SIO_000300: 3.271e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 1375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090344697840674e-5
allele num: 47839
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10005
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

DP
type: SiteQuality
SIO_000300: 3.68747e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 2.559e0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

QD
type: SiteQuality
SIO_000300: 2.111e1

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9989
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.556500607533414e-4
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.328e0

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 2.729e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 3.679663e6

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47785
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.520450053215752e-4
allele num: 6577
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9935
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

QD
type: SiteQuality
SIO_000300: 3.147e1

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 3.665033e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

GenotypeQuality
all individuals: 175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.522765341860819e-4
allele num: 6567
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47715
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.08483402039488e-4
allele num: 9218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

QD
type: SiteQuality
SIO_000300: 1.549e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

FS
type: SiteQuality
SIO_000300: 2.453e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 3.65235e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 2130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.048152107833889e-4
allele num: 47703
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6553
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8495
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.035209117736847e-4
allele num: 9827
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.926e1

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.129e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 3.650975e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

GenotypeQuality
all individuals: 2446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 39425
bin: 9.75e1
variant carriers: 163

GenotypeQuality
all individuals: 1397
bin: 8.75e1
variant carriers: 4

South Asian
type: Population
allele count: 12
allele frequency: 1.226366888094022e-3
allele num: 9785
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 148
allele frequency: 3.104026845637584e-3
allele num: 47680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6563
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.885122410546139e-4
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 2.277163305139883e-3
allele num: 9222
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.592356687898089e-3
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 8.845643520566122e-4
allele num: 4522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.783e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 3.649535e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.949e1

QD
type: SiteQuality
SIO_000300: 1.825e1

GenotypeQuality
all individuals: 1392
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.157513002815288e-5
allele num: 41914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4787
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6109
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 505
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.074e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.137123e6

VQSLOD
type: SiteQuality
SIO_000300: -2.51e0

FS
type: SiteQuality
SIO_000300: 3.627e0

QD
type: SiteQuality
SIO_000300: 1.753e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.264390199719216e-5
allele num: 44162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6313
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8823
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.077e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.221e0

DP
type: SiteQuality
SIO_000300: 1.193848e6

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.381e0

GenotypeQuality
all individuals: 339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.448400724200362e-3
allele num: 8285
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4309
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.212340434946129e-5
allele num: 45201
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.118943717131028e-4
allele num: 8937
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.636393388970708e-4
allele num: 6111
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.72e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.759e0

QD
type: SiteQuality
SIO_000300: 1.436e1

VQSLOD
type: SiteQuality
SIO_000300: -2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

DP
type: SiteQuality
SIO_000300: 1.226759e6

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.17983651226158e-5
allele num: 45875
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9001
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 1.248432e6

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 5.502e0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.047e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 325
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8377
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.449905756125852e-4
allele num: 6897
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46263
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4379
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.263608e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.166e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 7.27e0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.104240282685512e-4
allele num: 9056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.797684378160846e-4
allele num: 46467
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7139
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.541e1

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

FS
type: SiteQuality
SIO_000300: 1.836e0

DP
type: SiteQuality
SIO_000300: 1.272551e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6509
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.380102344400809e-4
allele num: 8403
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46505
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.917e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.271713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

QD
type: SiteQuality
SIO_000300: 1.949e1

GenotypeQuality
all individuals: 47907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4934
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4398
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.519372999227288e-4
allele num: 9059
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46475
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.571003451970003e-4
allele num: 8401
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6509
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7265
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 1.112e0

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.269636e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.09e-2

QD
type: SiteQuality
SIO_000300: 1.655e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 1147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45002
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.169479758753851e-5
allele num: 46094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7309
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4379
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9003
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8367
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.245905e6

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
type: SiteQuality
SIO_000300: 1.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.649e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 1147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9003
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8367
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4379
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.169479758753851e-5
allele num: 46094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7309
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.649e0

QD
type: SiteQuality
SIO_000300: 1.918e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 1.245905e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.190292623094446e-5
allele num: 45656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6401
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

DP
type: SiteQuality
SIO_000300: 1.21997e6

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45411
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.370614035087719e-4
allele num: 7296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.592e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

DP
type: SiteQuality
SIO_000300: 1.210214e6

QD
type: SiteQuality
SIO_000300: 2.896e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1601
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.215771864128869e-5
allele num: 45131
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4293
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8229
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6327
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8881
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7283
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.198282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 4.093e1

VQSLOD
type: SiteQuality
SIO_000300: -2.99e0

GenotypeQuality
all individuals: 272
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.785488958990536e-4
allele num: 7925
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6263
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7271
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8789
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.184317e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.511e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 969
bin: 5.25e1
variant carriers: 24

GenotypeQuality
all individuals: 1709
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1932
bin: 3.75e1
variant carriers: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6259
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.576896217701786e-4
allele num: 44391
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 7.633587786259542e-3
allele num: 8777
num of homozygotes: 0

African
type: Population
allele count: 1008
allele frequency: 1.231370632787686e-1
allele num: 8186
num of homozygotes: 39

South Asian
type: Population
allele count: 3
allele frequency: 4.121445253468883e-4
allele num: 7279
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4245
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 8.787346221441126e-3
allele num: 569
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.659e0

MQ
type: SiteQuality
SIO_000300: 5.411e1

DP
type: SiteQuality
SIO_000300: 1.193935e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.491e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

GenotypeQuality
all individuals: 1643
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 361
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 574
bin: 5.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43784
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.123711340206186e-4
allele num: 7275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4221
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8033
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.776198934280639e-3
allele num: 563
num of homozygotes: 0

East Asian
type: Population
allele count: 215
allele frequency: 3.465506125080593e-2
allele num: 6204
num of homozygotes: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e0

QD
type: SiteQuality
SIO_000300: 1.617e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.937e-1

DP
type: SiteQuality
SIO_000300: 1.16451e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.442e0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 44

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 22

GenotypeQuality
all individuals: 711
bin: 5.75e1
variant carriers: 49

GenotypeQuality
all individuals: 31754
bin: 6.25e1
variant carriers: 87

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 37

Latino
type: Population
allele count: 434
allele frequency: 5.013863216266174e-2
allele num: 8656
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 21
allele frequency: 5.009541984732824e-3
allele num: 4192
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 3.208556149732621e-2
allele num: 561
num of homozygotes: 0

East Asian
type: Population
allele count: 516
allele frequency: 8.418991678903573e-2
allele num: 6129
num of homozygotes: 12

African
type: Population
allele count: 984
allele frequency: 1.225099601593626e-1
allele num: 8032
num of homozygotes: 52

European (Non-Finnish)
type: Population
allele count: 765
allele frequency: 1.758054878889553e-2
allele num: 43514
num of homozygotes: 3

South Asian
type: Population
allele count: 442
allele frequency: 6.016879934658317e-2
allele num: 7346
num of homozygotes: 10

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.207116e6

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 2.929e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.688e-1

QD
type: SiteQuality
SIO_000300: 1.945e1

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7379
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43487
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.632386549134835e-4
allele num: 6126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7961
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.159298e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.5181e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.234e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.047e0

QD
type: SiteQuality
SIO_000300: 9.91e0

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7945
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7405
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.30361667818475e-5
allele num: 43410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.156765e6

QD
type: SiteQuality
SIO_000300: 3.22e1

VQSLOD
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 2066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1572
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33942
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7401
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.15807759119861e-4
allele num: 8635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 3.234675723758693e-4
allele num: 43281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4183
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.863e1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.787e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.93e-2

DP
type: SiteQuality
SIO_000300: 1.156729e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
all individuals: 1747
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.396931927133269e-4
allele num: 4172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43203
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7907
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7428
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.352e0

FS
type: SiteQuality
SIO_000300: 1.876e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.156288e6

GenotypeQuality
all individuals: 1364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.558452205279554e-4
allele num: 6099
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.209e-1

QD
type: SiteQuality
SIO_000300: 1.894e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.706e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

DP
type: SiteQuality
SIO_000300: 1.151972e6

GenotypeQuality
all individuals: 749
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1952
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4143
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 559
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42873
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8587
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6063
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.31891321551042e-4
allele num: 7582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.756e1

DP
type: SiteQuality
SIO_000300: 1.150179e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42603
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4119
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.926701570680628e-4
allele num: 7640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6031
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.195e0

DP
type: SiteQuality
SIO_000300: 1.149446e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.676e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 2.466e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeQuality
all individuals: 405
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.300221037576388e-4
allele num: 7691
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7709
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6021
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4114
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 1.4777e1

DP
type: SiteQuality
SIO_000300: 1.147506e6

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.866e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.34e0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 236
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variant carriers: 1

GenotypeQuality
all individuals: 15362
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.456278247199843e-5
allele num: 40712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3979
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5831
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8297
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.117544e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.683e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.174e0

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 729
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 457
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variant carriers: 0

GenotypeQuality
all individuals: 1799
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3923
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5727
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.434102968593145e-4
allele num: 6973
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8171
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7963
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.092283e6

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 4.662e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6017
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.755580049600441e-4
allele num: 3629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 483
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7461
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.917e0

DP
type: SiteQuality
SIO_000300: 9.68648e5

FS
type: SiteQuality
SIO_000300: 2.319e0

VQSLOD
type: SiteQuality
SIO_000300: -2.164e0

QD
type: SiteQuality
SIO_000300: 1.492e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

GenotypeQuality
all individuals: 1907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 229
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variant carriers: 1

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6799
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.82648401826484e-4
allele num: 5475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3361
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31743
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6927
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.183e1

DP
type: SiteQuality
SIO_000300: 8.5333e5

VQSLOD
type: SiteQuality
SIO_000300: -5.667e-1

FS
type: SiteQuality
SIO_000300: 3.358e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2157
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GenotypeQuality
all individuals: 150
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6547
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 5285
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.475143826523086e-4
allele num: 6779
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3285
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30664
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

DP
type: SiteQuality
SIO_000300: 8.19902e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.908e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.75e1
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GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 7777
bin: 6.25e1
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GenotypeQuality
all individuals: 148
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4401
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.876876876876877e-4
allele num: 5328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5955
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3703
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

QD
type: SiteQuality
SIO_000300: 1.148e1

DP
type: SiteQuality
SIO_000300: 6.52066e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3540
bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5943
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.212954352484535e-4
allele num: 24733
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2855
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.322e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.078e0

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 2.502e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.44075e5

FS
type: SiteQuality
SIO_000300: 2.172e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19982
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 4.389574759945131e-3
allele num: 3645
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2491
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5193
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.335357309668379e-4
allele num: 4282
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.569e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.344e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.35085e5

FS
type: SiteQuality
SIO_000300: 4.802e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 3
allele frequency: 5.82977069568597e-4
allele num: 5146
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.744958481613286e-4
allele num: 4215
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2833
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19573
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 5.31588e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.029e-1

FS
type: SiteQuality
SIO_000300: 8.51e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.568e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 17370
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2467
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19303
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2829
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.963864886095837e-4
allele num: 5092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4117
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.2792e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.034e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.653e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.645e1

GenotypeQuality
all individuals: 295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2467
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19303
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4117
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 295
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.534817956875221e-4
allele num: 2829
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.653e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

VQSLOD
type: SiteQuality
SIO_000300: -1.034e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.645e1

DP
type: SiteQuality
SIO_000300: 5.2792e5

GenotypeQuality
all individuals: 230
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 893
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1639
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GenotypeQuality
all individuals: 111
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3861
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.174267543621243e-4
allele num: 18397
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2677
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2413
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.239e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 5.16305e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.744e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1434
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2643
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4912
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3359
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 279
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2397
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.538631957906397e-5
allele num: 18055
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.14685e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 652
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2401
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African
type: Population
allele count: 1
allele frequency: 3.004807692307692e-4
allele num: 3328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17883
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47747
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075384449940854e-4
allele num: 9299
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.663795e6

MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47770
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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South Asian
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DP
type: SiteQuality
SIO_000300: 9.668609e6

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.78e0

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.088554720133668e-5
allele num: 47880
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.032999999999999e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.098547e7

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 96

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 174

GenotypeQuality
all individuals: 208
bin: 2.75e1
variant carriers: 72

GenotypeQuality
all individuals: 54751
bin: 9.75e1
variant carriers: 43749

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 193

South Asian
type: Population
allele count: 6067
allele frequency: 6.285743887277249e-1
allele num: 9652
num of homozygotes: 699

Latino
type: Population
allele count: 3348
allele frequency: 3.604263106900635e-1
allele num: 9289
num of homozygotes: 513

European (Non-Finnish)
type: Population
allele count: 38019
allele frequency: 7.94047619047619e-1
allele num: 47880
num of homozygotes: 9289

African
type: Population
allele count: 5695
allele frequency: 6.689768589216493e-1
allele num: 8513
num of homozygotes: 1473

European (Finnish)
type: Population
allele count: 3864
allele frequency: 8.533568904593639e-1
allele num: 4528
num of homozygotes: 885

Other
type: Population
allele count: 473
allele frequency: 7.580128205128205e-1
allele num: 624
num of homozygotes: 103

East Asian
type: Population
allele count: 2576
allele frequency: 3.889476068247018e-1
allele num: 6623
num of homozygotes: 372

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

VQSLOD
type: SiteQuality
SIO_000300: 4.441e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.032999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.513e0

QD
type: SiteQuality
SIO_000300: 2.679e1

DP
type: SiteQuality
SIO_000300: 1.098547e7

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1