19-11526694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526694
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526694
    reference: chr 19
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.551C>T
  hgvsp: ENSP00000454678.1:p.Gln185Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.448C>T
  hgvsp: ENSP00000464876.1:p.Gln150Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.556C>T
  hgvsp: ENSP00000377075.3:p.Gln186Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.763C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+594C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.556C>T
  hgvsp: ENSP00000369823.3:p.Gln186Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.253C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.217C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42027
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln186Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-11517492-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517492
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517492
    reference: chr 19
allele count: 1
allele frequency: 8.433694295449179e-6
allele num: 118572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.477G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.128G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.686G>C
  hgvsp: ENSP00000377075.3:p.Cys229Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.671G>C
  hgvsp: ENSP00000454678.1:p.Ala225Pro
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.893G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.686G>C
  hgvsp: ENSP00000369823.3:p.Cys229Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*327G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.67G>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys229Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-11517498-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517498
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517498
    reference: chr 19
allele count: 1
allele frequency: 8.363022061652199e-6
allele num: 119574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.61A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.665A>T
  hgvsp: ENSP00000454678.1:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.680A>T
  hgvsp: ENSP00000377075.3:p.Glu227Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.471A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*321A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.680A>T
  hgvsp: ENSP00000369823.3:p.Glu227Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.122A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.887A>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu227Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

19-11517500-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517500
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517500
    reference: chr 19
allele count: 1
allele frequency: 8.43113449345744e-6
allele num: 118608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.663A>G
  hgvsp: ENSP00000454678.1:p.Gln222Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.885A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.678A>G
  hgvsp: ENST00000380456.3:c.678A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.120A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*319A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.521A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.678A>G
  hgvsp: ENST00000393423.3:c.678A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.59A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.469A>G
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln222Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

19-11517508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517508
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517508
    reference: chr 19
allele count: 1
allele frequency: 8.422613031466883e-6
allele num: 118728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.655G>A
  hgvsp: ENST00000562663.1:c.655G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.877G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.670G>A
  hgvsp: ENSP00000369823.3:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-1G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.112G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.670G>A
  hgvsp: ENSP00000377075.3:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.51G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*311G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.513G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.75e1
  variant carriers: 0
hgvs: n.462-1G>A
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

19-11517515-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517515
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517515
    reference: chr 19
allele count: 1
allele frequency: 8.420059950826851e-6
allele num: 118764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.663T>A
  hgvsp: ENST00000393423.3:c.663T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.105T>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.663T>A
  hgvsp: ENST00000380456.3:c.663T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.648T>A
  hgvsp: ENSP00000454678.1:p.Leu217Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.44T>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*304T>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.506T>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-8T>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.870T>A
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu217Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

19-11517521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517521
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517521
    reference: chr 19
allele count: 2
allele frequency: 1.679712433231431e-5
allele num: 119068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.642A>G
  hgvsp: ENSP00000454678.1:p.Lys215Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.657A>G
  hgvsp: ENST00000380456.3:c.657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.500A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.99A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*298A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-14A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.864A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.657A>G
  hgvsp: ENST00000393423.3:c.657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.38A>G
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys215Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

19-11517521-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517521
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517521
    reference: chr 19
allele count: 1
allele frequency: 8.398562166157153e-6
allele num: 119068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.657A>C
  hgvsp: ENSP00000369823.3:p.Gln219His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.500A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.642A>C
  hgvsp: ENSP00000454678.1:p.Lys215Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.38A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.657A>C
  hgvsp: ENSP00000377075.3:p.Gln219His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*298A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.864A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-14A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.99A>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln219His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-11517530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517530
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517530
    reference: chr 19
allele count: 1
allele frequency: 8.448229251148959e-6
allele num: 118368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.29A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-23A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.648A>G
  hgvsp: ENST00000393423.3:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.855A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.633A>G
  hgvsp: ENSP00000454678.1:p.Glu212Gly
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.90A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*289A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.648A>G
  hgvsp: ENST00000380456.3:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.491A>G
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu212Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-11517545-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517545
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517545
    reference: chr 19
allele count: 1
allele frequency: 8.532423208191126e-6
allele num: 117200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.75A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-5A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-38A>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
hgvs: c.638-5A>G
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-11517555-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517555
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517555
    reference: chr 19
allele count: 1
allele frequency: 8.593870851308846e-6
allele num: 116362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-15C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-48C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.65C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-15C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-15C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-15C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-15C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-15C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-15C>G
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36462
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-11517569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517569
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517569
    reference: chr 19
allele count: 1
allele frequency: 8.692930908585139e-6
allele num: 115036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-29G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.51G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-62G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-29G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-29G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-29G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-29G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-29G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-29G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-11517570-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517570
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517570
    reference: chr 19
allele count: 1
allele frequency: 8.690211345939933e-6
allele num: 115072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-30T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-30T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-30T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-30T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.50T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-30T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-30T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-63T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-30T>G
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

19-11517571-AGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517571
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517569
    reference: chr 19
allele count: 1
allele frequency: 8.69837514352319e-6
allele num: 114964
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-33_638-32delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-33_481-32delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-33_845-32delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-33_19-32delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.47_48delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-66_462-65delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-33_623-32delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-33_*279-32delAC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-33_638-32delAC
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10269
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: AGT
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-11517578-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517578
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517578
    reference: chr 19
allele count: 35
allele frequency: 3.064476587398872e-4
allele num: 114212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.42T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-38T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-71T>C
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28947
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

19-11517584-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11517584
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11517584
    reference: chr 19
allele count: 1
allele frequency: 8.835327172165185e-6
allele num: 113182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000566153
  gene symbol: RGL3
  hgvsc: ENST00000566153.1:n.19-44C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.638-44C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000565895
  gene symbol: RGL3
  hgvsc: ENST00000565895.1:n.36C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.623-44C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.845-44C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.481-44C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.462-77C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.638-44C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*279-44C>G
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/19-11526564-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526564
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526564
    reference: chr 19
allele count: 2
allele frequency: 1.754478305875748e-5
allele num: 113994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+59T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+724T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+49T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+49T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+59T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+49T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+49T>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

19-11526566-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526566
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526566
    reference: chr 19
allele count: 5
allele frequency: 4.384426517011575e-5
allele num: 114040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+57T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+47T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+47T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+47T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+57T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+47T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+722T>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42084
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-11526576-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526576
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526573
    reference: chr 19
allele count: 1
allele frequency: 8.762091686527408e-6
allele num: 114128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+34_637+36delAAG
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+709_461+711delAAG
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+44_288+46delAAG
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+34_*86+36delAAG
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+34_637+36delAAG
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+34_844+36delAAG
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+44_622+46delAAG
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: CCTT
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

19-11526587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526587
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526587
    reference: chr 19
allele count: 1
allele frequency: 8.719308035714285e-6
allele num: 114688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+26G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+36G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+26G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+26G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+36G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+26G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+701G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-11526589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526589
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526589
    reference: chr 19
allele count: 37
allele frequency: 3.221649484536082e-4
allele num: 114848
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+24G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+24G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+24G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+24G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+34G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+699G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+34G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

19-11526590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526590
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526590
    reference: chr 19
allele count: 21
allele frequency: 1.825007821462092e-4
allele num: 115068
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+23C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+23C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+23C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+33C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+33C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+23C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+698C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42081
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-11526590-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526590
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526590
    reference: chr 19
allele count: 37
allele frequency: 3.215489971147496e-4
allele num: 115068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+33C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+23C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+23C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+33C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+698C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+23C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+23C>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/19-11526592-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526592
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526592
    reference: chr 19
allele count: 4
allele frequency: 3.472583949716984e-5
allele num: 115188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+31G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+696G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+21G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+31G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+21G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+21G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+21G>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

19-11526597-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526597
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526597
    reference: chr 19
allele count: 178
allele frequency: 1.538461538461538e-3
allele num: 115700
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+26A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+16A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+16A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+26A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+16A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+691A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+16A>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 9.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 2
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-11526604-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526604
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526604
    reference: chr 19
allele count: 2
allele frequency: 1.718094976290289e-5
allele num: 116408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+9T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+9T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+9T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+19T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+684T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+9T>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+19T>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

19-11526605-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526605
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526605
    reference: chr 19
allele count: 1
allele frequency: 8.586934121041424e-6
allele num: 116456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+683G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+18G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+8G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+8G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+8G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+18G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+8G>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
hgvs: c.637+8G>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

19-11526605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526605
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526605
    reference: chr 19
allele count: 4
allele frequency: 3.434773648416569e-5
allele num: 116456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+683G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+8G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+8G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+18G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+8G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+8G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+18G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
hgvs: c.637+8G>A
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-11526607-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526607
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526607
    reference: chr 19
allele count: 7
allele frequency: 5.986692437952209e-5
allele num: 116926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+6G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+16G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+6G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+6G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+6G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+16G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+681G>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42039
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
hgvs: c.637+6G>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

19-11526608-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526608
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526608
    reference: chr 19
allele count: 16
allele frequency: 1.366773730608898e-4
allele num: 117064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+680G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+5G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+5G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+5G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+5G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+15G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+15G>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
hgvs: c.637+5G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-11526612-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526612
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526612
    reference: chr 19
allele count: 2
allele frequency: 1.701606316362646e-5
allele num: 117536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+676G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.844+1G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+11G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.637+1G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.530G>C
  hgvsp: ENST00000567431.1:c.530G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.637+1G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*86+1G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+11G>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
hgvs: c.637+1G>C
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

19-11526615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526615
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526615
    reference: chr 19
allele count: 2
allele frequency: 1.693939085950469e-5
allele num: 118068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.842C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+673C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.635C>T
  hgvsp: ENSP00000377075.3:p.Thr212Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*84C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.635C>T
  hgvsp: ENSP00000369823.3:p.Thr212Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288+8C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.527C>T
  hgvsp: ENSP00000464876.1:p.Thr176Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622+8C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr212Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-11526623-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526623
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526623
    reference: chr 19
allele count: 1
allele frequency: 8.382651264942076e-6
allele num: 119294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.627G>C
  hgvsp: ENSP00000369823.3:p.Gln209His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.288G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.834G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.519G>C
  hgvsp: ENSP00000464876.1:p.Gln173His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*76G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+665G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.622G>C
  hgvsp: ENSP00000454678.1:p.Gln208His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.627G>C
  hgvsp: ENSP00000377075.3:p.Gln209His
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42030
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln209His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-11526629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526629
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526629
    reference: chr 19
allele count: 7
allele frequency: 5.837808986889949e-5
allele num: 119908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.621G>A
  hgvsp: ENST00000393423.3:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.616G>A
  hgvsp: ENST00000562663.1:c.616G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+659G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.513G>A
  hgvsp: ENST00000567431.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.282G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.621G>A
  hgvsp: ENST00000380456.3:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.828G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro207Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff

19-11526647-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526647
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526647
    reference: chr 19
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.603A>C
  hgvsp: ENST00000380456.3:c.603A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.603A>C
  hgvsp: ENST00000393423.3:c.603A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.264A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+641A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.598A>C
  hgvsp: ENST00000562663.1:c.598A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.810A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*52A>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.495A>C
  hgvsp: ENST00000567431.1:c.495A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42032
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg201Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

19-11526648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526648
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526648
    reference: chr 19
allele count: 2
allele frequency: 1.652400938563733e-5
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.602G>A
  hgvsp: ENSP00000369823.3:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.602G>A
  hgvsp: ENSP00000377075.3:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+640G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.809G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.597G>A
  hgvsp: ENSP00000454678.1:p.Arg200Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.263G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.494G>A
  hgvsp: ENSP00000464876.1:p.Arg165Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg201Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-11526657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526657
    reference: chr 19
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.593A>G
  hgvsp: ENSP00000369823.3:p.Glu198Gly
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.800A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*42A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+631A>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.588A>G
  hgvsp: ENSP00000454678.1:p.Glu197Gly
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.593A>G
  hgvsp: ENSP00000377075.3:p.Glu198Gly
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.485A>G
  hgvsp: ENSP00000464876.1:p.Glu162Gly
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.254A>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42032
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9168
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu198Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-11526658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526658
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526658
    reference: chr 19
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.799G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.587G>A
  hgvsp: ENSP00000454678.1:p.Glu197Lys
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.592G>A
  hgvsp: ENSP00000377075.3:p.Glu198Lys
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.592G>A
  hgvsp: ENSP00000369823.3:p.Glu198Lys
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.253G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+630G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.484G>A
  hgvsp: ENSP00000464876.1:p.Glu162Lys
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu198Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/19-11526662-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526662
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526662
    reference: chr 19
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.588G>T
  hgvsp: ENSP00000377075.3:p.Leu196Phe
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.583G>T
  hgvsp: ENSP00000454678.1:p.Leu195Phe
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.249G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.480G>T
  hgvsp: ENSP00000464876.1:p.Leu160Phe
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.588G>T
  hgvsp: ENSP00000369823.3:p.Leu196Phe
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+626G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*37G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.795G>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu196Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-11526663-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526663
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526663
    reference: chr 19
allele count: 13
allele frequency: 1.072731173567904e-4
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.587T>C
  hgvsp: ENSP00000377075.3:p.Leu196Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.248T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*36T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.587T>C
  hgvsp: ENSP00000369823.3:p.Leu196Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+625T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.582T>C
  hgvsp: ENSP00000454678.1:p.Leu195Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.794T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.479T>C
  hgvsp: ENSP00000464876.1:p.Leu160Ser
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42033
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu196Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

19-11526664-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526664
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526664
    reference: chr 19
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*35T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.793T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+624T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.581T>C
  hgvsp: ENST00000562663.1:c.581T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.586T>C
  hgvsp: ENST00000393423.3:c.586T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.247T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.586T>C
  hgvsp: ENST00000380456.3:c.586T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.478T>C
  hgvsp: ENST00000567431.1:c.478T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42031
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu196Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

19-11526674-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526674
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526674
    reference: chr 19
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+614G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.783G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.237G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.576G>C
  hgvsp: ENST00000380456.3:c.576G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.571G>C
  hgvsp: ENST00000562663.1:c.571G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.468G>C
  hgvsp: ENST00000567431.1:c.468G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*25G>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.576G>C
  hgvsp: ENST00000393423.3:c.576G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu192Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-11526683-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526683
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526683
    reference: chr 19
allele count: 10
allele frequency: 8.248783304462591e-5
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.562G>T
  hgvsp: ENSP00000454678.1:p.Glu188Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.774G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.567G>T
  hgvsp: ENSP00000369823.3:p.Glu189Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.459G>T
  hgvsp: ENSP00000464876.1:p.Glu153Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.264G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.567G>T
  hgvsp: ENSP00000377075.3:p.Glu189Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+605G>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.228G>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42031
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu189Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-11526683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526683
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526683
    reference: chr 19
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.459G>A
  hgvsp: ENST00000567431.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.228G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.567G>A
  hgvsp: ENST00000393423.3:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.264G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.567G>A
  hgvsp: ENST00000380456.3:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.562G>A
  hgvsp: ENST00000562663.1:c.562G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.774G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+605G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu189Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

19-11526688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526688
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526688
    reference: chr 19
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.454G>A
  hgvsp: ENSP00000464876.1:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.223G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+600G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.769G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.562G>A
  hgvsp: ENSP00000369823.3:p.Ala188Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.562G>A
  hgvsp: ENSP00000377075.3:p.Ala188Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.557G>A
  hgvsp: ENSP00000454678.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.259G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala188Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-11526705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526705
    reference: chr 19
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.437G>A
  hgvsp: ENSP00000464876.1:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.242G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.206G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.540G>A
  hgvsp: ENST00000563726.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.545G>A
  hgvsp: ENSP00000369823.3:p.Ser182Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.540G>A
  hgvsp: ENSP00000454678.1:p.Ser181Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.545G>A
  hgvsp: ENSP00000377075.3:p.Ser182Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+583G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.752G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser182Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-11526708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526708
    reference: chr 19
allele count: 2
allele frequency: 1.650982334489021e-5
allele num: 121140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.542G>A
  hgvsp: ENSP00000369823.3:p.Gly181Glu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.434G>A
  hgvsp: ENSP00000464876.1:p.Gly145Glu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.542G>A
  hgvsp: ENSP00000377075.3:p.Gly181Glu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.537G>A
  hgvsp: ENST00000563726.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.239G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.203G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.537G>A
  hgvsp: ENSP00000454678.1:p.Gly180Glu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.749G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+580G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly181Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-11526717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526717
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526717
    reference: chr 19
allele count: 11
allele frequency: 9.085352759469415e-5
allele num: 121074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.499C>T
  hgvsp: ENSP00000456429.1:p.Arg167Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.425C>T
  hgvsp: ENSP00000464876.1:p.Ala142Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.230C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.533C>T
  hgvsp: ENSP00000377075.3:p.Ala178Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.528C>T
  hgvsp: ENSP00000454678.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.528C>T
  hgvsp: ENST00000563726.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.533C>T
  hgvsp: ENSP00000369823.3:p.Ala178Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.740C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.194C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+571C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala178Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-11526720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526720
    reference: chr 19
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+568G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.525G>A
  hgvsp: ENST00000563726.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.525G>A
  hgvsp: ENSP00000454678.1:p.Trp176Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.496G>A
  hgvsp: ENSP00000456429.1:p.Gly166Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.530G>A
  hgvsp: ENSP00000369823.3:p.Trp177Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.737G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.530G>A
  hgvsp: ENSP00000377075.3:p.Trp177Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.422G>A
  hgvsp: ENSP00000464876.1:p.Trp141Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.227G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.191G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp177Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-11526723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526723
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526723
    reference: chr 19
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.493G>A
  hgvsp: ENSP00000456429.1:p.Ala165Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.527G>A
  hgvsp: ENSP00000369823.3:p.Gly176Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.522G>A
  hgvsp: ENST00000563726.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.188G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.419G>A
  hgvsp: ENSP00000464876.1:p.Gly140Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+565G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.522G>A
  hgvsp: ENSP00000454678.1:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.224G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.527G>A
  hgvsp: ENSP00000377075.3:p.Gly176Asp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.734G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42017
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly176Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ

19-11526726-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526726
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526726
    reference: chr 19
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.221T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.524T>C
  hgvsp: ENSP00000369823.3:p.Leu175Pro
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.490T>C
  hgvsp: ENSP00000456429.1:p.Trp164Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.185T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.416T>C
  hgvsp: ENSP00000464876.1:p.Leu139Pro
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.519T>C
  hgvsp: ENSP00000454678.1:p.Leu174Pro
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.519T>C
  hgvsp: ENST00000563726.1:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+562T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.524T>C
  hgvsp: ENSP00000377075.3:p.Leu175Pro
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.731T>C
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu175Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-11526732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526732
    reference: chr 19
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.518C>T
  hgvsp: ENSP00000377075.3:p.Thr173Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.215C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.484C>T
  hgvsp: ENSP00000456429.1:p.Pro162Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.513C>T
  hgvsp: ENSP00000454678.1:p.Thr172Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.518C>T
  hgvsp: ENSP00000369823.3:p.Thr173Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.410C>T
  hgvsp: ENSP00000464876.1:p.Thr137Ile
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.179C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.725C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+556C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.513C>T
  hgvsp: ENST00000563726.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr173Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-11526732-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526732
    reference: chr 19
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.215C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.513C>A
  hgvsp: ENSP00000454678.1:p.Thr172Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.725C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.518C>A
  hgvsp: ENSP00000377075.3:p.Thr173Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.179C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+556C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.484C>A
  hgvsp: ENSP00000456429.1:p.Pro162Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.513C>A
  hgvsp: ENSP00000455922.1:p.Asn171Lys
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.410C>A
  hgvsp: ENSP00000464876.1:p.Thr137Asn
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.518C>A
  hgvsp: ENSP00000369823.3:p.Thr173Asn
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr173Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-11526734-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526734
    reference: chr 19
allele count: 4
allele frequency: 3.305730483793656e-5
allele num: 121002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.213A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.511A>T
  hgvsp: ENSP00000455922.1:p.Asn171Tyr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.177A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.511A>T
  hgvsp: ENST00000562663.1:c.511A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.408A>T
  hgvsp: ENST00000567431.1:c.408A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.482A>T
  hgvsp: ENSP00000456429.1:p.Glu161Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.723A>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.516A>T
  hgvsp: ENST00000380456.3:c.516A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.516A>T
  hgvsp: ENST00000393423.3:c.516A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+554A>T
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8002
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu161Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-11526735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526735
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526735
    reference: chr 19
allele count: 3
allele frequency: 2.480404802063697e-5
allele num: 120948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.481G>A
  hgvsp: ENSP00000456429.1:p.Glu161Lys
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.407G>A
  hgvsp: ENSP00000464876.1:p.Arg136Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.515G>A
  hgvsp: ENSP00000369823.3:p.Arg172Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.510G>A
  hgvsp: ENST00000563726.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+553G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.515G>A
  hgvsp: ENSP00000377075.3:p.Arg172Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.722G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.176G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.510G>A
  hgvsp: ENSP00000454678.1:p.Arg171Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.212G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg172Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-11526736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526736
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526736
    reference: chr 19
allele count: 4
allele frequency: 3.306714283352347e-5
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.514C>T
  hgvsp: ENSP00000369823.3:p.Arg172Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.509C>T
  hgvsp: ENSP00000455922.1:p.Pro170Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.175C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+552C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.509C>T
  hgvsp: ENSP00000454678.1:p.Arg171Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.480C>T
  hgvsp: ENST00000567080.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.406C>T
  hgvsp: ENSP00000464876.1:p.Arg136Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.514C>T
  hgvsp: ENSP00000377075.3:p.Arg172Ter
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.721C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.211C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg172Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-11526737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526737
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526737
    reference: chr 19
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.174C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.405C>T
  hgvsp: ENST00000567431.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.720C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.508C>T
  hgvsp: ENSP00000455922.1:p.Pro170Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.513C>T
  hgvsp: ENST00000380456.3:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.508C>T
  hgvsp: ENST00000562663.1:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.210C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+551C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.479C>T
  hgvsp: ENSP00000456429.1:p.Ser160Phe
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.513C>T
  hgvsp: ENST00000393423.3:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser160Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-11526737-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526737
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526737
    reference: chr 19
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.720C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.513C>A
  hgvsp: ENST00000393423.3:c.513C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.479C>A
  hgvsp: ENSP00000456429.1:p.Ser160Tyr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.508C>A
  hgvsp: ENSP00000455922.1:p.Pro170Thr
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.513C>A
  hgvsp: ENST00000380456.3:c.513C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.508C>A
  hgvsp: ENST00000562663.1:c.508C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.405C>A
  hgvsp: ENST00000567431.1:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+551C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.174C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.210C>A
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser160Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

19-11526740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526740
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526740
    reference: chr 19
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.717T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.505T>C
  hgvsp: ENSP00000455922.1:p.Cys169Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.505T>C
  hgvsp: ENST00000562663.1:c.505T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.171T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.510T>C
  hgvsp: ENST00000380456.3:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.402T>C
  hgvsp: ENST00000567431.1:c.402T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.476T>C
  hgvsp: ENSP00000456429.1:p.Val159Ala
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.510T>C
  hgvsp: ENST00000393423.3:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.207T>C
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+548T>C
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val159Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-11526748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526748
    reference: chr 19
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.502C>T
  hgvsp: ENST00000393423.3:c.502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.709C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.394C>T
  hgvsp: ENST00000567431.1:c.394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.502C>T
  hgvsp: ENST00000380456.3:c.502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.163C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.468C>T
  hgvsp: ENST00000567080.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.497C>T
  hgvsp: ENSP00000455922.1:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.199C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.497C>T
  hgvsp: ENST00000562663.1:c.497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+540C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro166Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-11526748-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526748
    reference: chr 19
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.199C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.394C>A
  hgvsp: ENSP00000464876.1:p.Leu132Met
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+540C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.497C>A
  hgvsp: ENSP00000454678.1:p.Leu167Met
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.502C>A
  hgvsp: ENSP00000377075.3:p.Leu168Met
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.468C>A
  hgvsp: ENST00000567080.1:c.468C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.709C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.163C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.502C>A
  hgvsp: ENSP00000369823.3:p.Leu168Met
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.497C>A
  hgvsp: ENSP00000455922.1:p.Pro166His
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu168Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

19-11526752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526752
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526752
    reference: chr 19
allele count: 5
allele frequency: 4.147587762957064e-5
allele num: 120552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.464G>A
  hgvsp: ENSP00000456429.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.493G>A
  hgvsp: ENST00000562663.1:c.493G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.705G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.498G>A
  hgvsp: ENST00000393423.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.493G>A
  hgvsp: ENSP00000455922.1:p.Gly165Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+536G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.390G>A
  hgvsp: ENST00000567431.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.195G>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.498G>A
  hgvsp: ENST00000380456.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.159G>A
  variant of: http://identifiers.org/hgnc/30282
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg155Gln
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-11526753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526753
    reference: chr 19
allele count: 8
allele frequency: 6.639885793964344e-5
allele num: 120484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.158C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.704C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.194C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.389C>T
  hgvsp: ENSP00000464876.1:p.Ser130Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.463C>T
  hgvsp: ENSP00000456429.1:p.Arg155Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.492C>T
  hgvsp: ENST00000563726.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.497C>T
  hgvsp: ENSP00000369823.3:p.Ser166Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.492C>T
  hgvsp: ENSP00000454678.1:p.Ser165Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.497C>T
  hgvsp: ENSP00000377075.3:p.Ser166Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+535C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser166Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

19-11526753-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526753
    reference: chr 19
allele count: 13
allele frequency: 1.078981441519206e-4
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.492C>G
  hgvsp: ENSP00000454678.1:p.Ser165Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.389C>G
  hgvsp: ENSP00000464876.1:p.Ser130Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.704C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.492C>G
  hgvsp: ENSP00000455922.1:p.Phe164Leu
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.463C>G
  hgvsp: ENSP00000456429.1:p.Arg155Gly
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.497C>G
  hgvsp: ENSP00000369823.3:p.Ser166Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.497C>G
  hgvsp: ENSP00000377075.3:p.Ser166Trp
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+535C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.194C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.158C>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser166Trp
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

19-11526759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526759
    reference: chr 19
allele count: 73058
allele frequency: 6.066529378549839e-1
allele num: 120428
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.491C>T
  hgvsp: ENSP00000377075.3:p.Ala164Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.491C>T
  hgvsp: ENSP00000369823.3:p.Ala164Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.188C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.486C>T
  hgvsp: ENST00000563726.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+529C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.383C>T
  hgvsp: ENSP00000464876.1:p.Ala128Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.486C>T
  hgvsp: ENSP00000454678.1:p.Ala163Val
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.698C>T
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.457C>T
  hgvsp: ENSP00000456429.1:p.Pro153Ser
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.152C>T
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 7.25e1
  variant carriers: 3323
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.75e1
  variant carriers: 3106
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 4.25e1
  variant carriers: 3228
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 8.75e1
  variant carriers: 1774
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 2.25e1
  variant carriers: 2182
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 5.75e1
  variant carriers: 4832
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 7.75e1
  variant carriers: 2589
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.75e1
  variant carriers: 3907
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.75e1
  variant carriers: 1604
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.25e1
  variant carriers: 4725
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 2383
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 786
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 3.25e1
  variant carriers: 2173
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.75e1
  variant carriers: 2416
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 1287
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 6.75e1
  variant carriers: 3737
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 6.25e1
  variant carriers: 4388
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 8.25e1
  variant carriers: 2226
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.75e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.75e1
  variant carriers: 226
hgvs: p.Ala164Val
num of homozygotes: 22440
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-11526760-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526759
    reference: chr 19
allele count: 1
allele frequency: 8.392641332080031e-6
allele num: 119152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.484delT
  hgvsp: ENSP00000455922.1:p.Cys162AlafsTer66
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.150delT
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.489delT
  hgvsp: ENSP00000369823.3:p.Ala164ProfsTer92
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.484delT
  hgvsp: ENSP00000454678.1:p.Ala163ProfsTer55
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.696delT
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.186delT
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.455delT
  hgvsp: ENSP00000456429.1:p.Leu152ArgfsTer?
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.381delT
  hgvsp: ENSP00000464876.1:p.Ala128ProfsTer?
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.489delT
  hgvsp: ENSP00000377075.3:p.Ala164ProfsTer92
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+527delT
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26939
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala164ProfsTer92
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: CA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

19-11526760-CAGGGGGGTCTCGGAAATCCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526739
    reference: chr 19
allele count: 1
allele frequency: 8.392641332080031e-6
allele num: 119152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsp: ENSP00000464876.1:p.Gln121_Pro127del
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsp: ENSP00000456429.1:p.Arg146_Leu152del
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsp: ENSP00000454678.1:p.Gln156_Pro162del
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsp: ENSP00000455922.1:p.Ser155_Pro161del
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsp: ENSP00000377075.3:p.Gln157_Pro163del
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsp: ENSP00000369823.3:p.Gln157_Pro163del
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln157_Pro163del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: CAGGGGGGTCTCGGAAATCCTG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-11526761-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526761
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526762
    reference: chr 19
allele count: 2
allele frequency: 1.68044632654433e-5
allele num: 119016
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.488dupC
  hgvsp: ENSP00000377075.3:p.Ala164CysfsTer21
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.695dupC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.185dupC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.483dupC
  hgvsp: ENSP00000455922.1:p.Cys162LeufsTer62
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.483dupC
  hgvsp: ENSP00000454678.1:p.Ala163CysfsTer21
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.488dupC
  hgvsp: ENSP00000369823.3:p.Ala164CysfsTer21
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+526dupC
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.454dupC
  hgvsp: ENSP00000456429.1:p.Leu152ProfsTer?
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.380dupC
  hgvsp: ENSP00000464876.1:p.Ala128CysfsTer21
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.149dupC
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala164CysfsTer21
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-11526762-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526762
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526762
    reference: chr 19
allele count: 1
allele frequency: 8.426729586247577e-6
allele num: 118670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.488C>A
  hgvsp: ENSP00000369823.3:p.Pro163His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.488C>A
  hgvsp: ENSP00000377075.3:p.Pro163His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.483C>A
  hgvsp: ENSP00000454678.1:p.Pro162His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.483C>A
  hgvsp: ENST00000563726.1:c.483C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.695C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.380C>A
  hgvsp: ENSP00000464876.1:p.Pro127His
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.149C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+526C>A
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.454C>A
  hgvsp: ENSP00000456429.1:p.Leu152Met
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.185C>A
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro163His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-11526765-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11526765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11526765
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 118542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000464876
  ensembl transcript: ENST00000567431
  gene symbol: RGL3
  hgvsc: ENST00000567431.1:c.377C>G
  hgvsp: ENSP00000464876.1:p.Pro126Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000455922
  ensembl transcript: ENST00000563726
  gene symbol: RGL3
  hgvsc: ENST00000563726.1:c.480C>G
  hgvsp: ENST00000563726.1:c.480C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000369823
  ensembl transcript: ENST00000380456
  gene symbol: RGL3
  hgvsc: ENST00000380456.3:c.485C>G
  hgvsp: ENSP00000369823.3:p.Pro162Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000377075
  ensembl transcript: ENST00000393423
  gene symbol: RGL3
  hgvsc: ENST00000393423.3:c.485C>G
  hgvsp: ENSP00000377075.3:p.Pro162Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000456429
  ensembl transcript: ENST00000567080
  gene symbol: RGL3
  hgvsc: ENST00000567080.1:c.451C>G
  hgvsp: ENSP00000456429.1:p.Pro151Ala
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000563436
  gene symbol: RGL3
  hgvsc: ENST00000563436.1:n.182C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205517
  ensembl protein: ENSP00000454678
  ensembl transcript: ENST00000562663
  gene symbol: RGL3
  hgvsc: ENST00000562663.1:c.480C>G
  hgvsp: ENSP00000454678.1:p.Pro161Arg
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000569439
  gene symbol: RGL3
  hgvsc: ENST00000569439.1:n.692C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000453604
  gene symbol: RGL3
  hgvsc: ENST00000453604.2:n.461+523C>G
  variant of: http://identifiers.org/hgnc/30282
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205517
  ensembl transcript: ENST00000561687
  gene symbol: RGL3
  hgvsc: ENST00000561687.1:n.146C>G
  variant of: http://identifiers.org/hgnc/30282
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40686
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro162Arg
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.115e0

DP
type: SiteQuality
SIO_000300: 3.571078e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.546e1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.704e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 576
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544449249397665e-5
allele num: 64748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1112e1

VQSLOD
type: SiteQuality
SIO_000300: -9.788e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 1.422799e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524436720631727e-5
allele num: 65598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 2.622e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

VQSLOD
type: SiteQuality
SIO_000300: -4.143e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.064e0

DP
type: SiteQuality
SIO_000300: 1.421706e6

QD
type: SiteQuality
SIO_000300: 1.658e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 1085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.940357852882704e-5
allele num: 10060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.313e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.420944e6

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.251e0

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.417119e6

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.611e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

GenotypeQuality
all individuals: 262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.972078181092939e-5
allele num: 10028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.412218e6

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: -5.198e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.364e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.997602876548142e-4
allele num: 10012
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

FS
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.49e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

DP
type: SiteQuality
SIO_000300: 1.406945e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53003457878148e-5
allele num: 65358
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.406945e6

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.49e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.24687656171914e-5
allele num: 16008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.392e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.394931e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548467017652524e-5
allele num: 64580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.358859e6

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.619e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.558117793705204e-5
allele num: 64180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

DP
type: SiteQuality
SIO_000300: 1.324689e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571832756994656e-5
allele num: 63620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.519e0

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.258115e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63646
num of homozygotes: 0

East Asian
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African
type: Population
allele count: 1
allele frequency: 1.032844453625284e-4
allele num: 9682
num of homozygotes: 0

Other
type: Population
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572821642025794e-5
allele num: 63580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 850
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.257e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 1.248007e6

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 6.75e1
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GenotypeQuality
all individuals: 491
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.901185770750989e-4
allele num: 63250
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.03777501037775e-4
allele num: 9636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14366
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.777145903678692e-4
allele num: 11254
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.764e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.422e1

DP
type: SiteQuality
SIO_000300: 1.224583e6

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 153
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1252
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1119
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variant carriers: 0

GenotypeQuality
all individuals: 4034
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.048657718120805e-4
allele num: 9536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.214237e6

QD
type: SiteQuality
SIO_000300: 1.364e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 794
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
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variant carriers: 0

GenotypeQuality
all individuals: 206
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GenotypeQuality
all individuals: 42084
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1752
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variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.08842150776738e-5
allele num: 64758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.712e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

DP
type: SiteQuality
SIO_000300: 3.510907e6

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

FS
type: SiteQuality
SIO_000300: 1.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
all individuals: 1760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
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GenotypeQuality
all individuals: 2194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4003
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variant carriers: 0

GenotypeQuality
all individuals: 795
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GenotypeQuality
all individuals: 899
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 408
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variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.718669918799593e-5
allele num: 64778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.604e1

DP
type: SiteQuality
SIO_000300: 3.511269e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 2681
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variant carriers: 0

GenotypeQuality
all individuals: 42085
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GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 1913
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GenotypeQuality
all individuals: 163
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variant carriers: 0

GenotypeQuality
all individuals: 4270
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variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.702e0

MQ
type: SiteQuality
SIO_000300: 5.562e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 4.757e0

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.514974e6

MQRankSum
type: SiteQuality
SIO_000300: -2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 642
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GenotypeQuality
all individuals: 902
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GenotypeQuality
all individuals: 1913
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GenotypeQuality
all individuals: 1330
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 1462
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11934
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.521574e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.499e0

FS
type: SiteQuality
SIO_000300: 4.157e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.317e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 785
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GenotypeQuality
all individuals: 42091
bin: 9.75e1
variant carriers: 37

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738223535546671e-4
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321262766945218e-4
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.109815354713314e-3
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539788125153979e-5
allele num: 64944
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.709e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 3.525846e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 1819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 788
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.567066163191594e-4
allele num: 12182
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.845756298643369e-4
allele num: 65014
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.313e1

DP
type: SiteQuality
SIO_000300: 3.526815e6

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
all individuals: 2933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
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variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.25e1
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GenotypeQuality
all individuals: 42081
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4785
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.691081920817055e-4
allele num: 65014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12182
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.526815e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42070
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12266
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.612262468482873e-5
allele num: 65044
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.319e1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.994e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 3.520602e6

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42106
bin: 9.75e1
variant carriers: 176

GenotypeQuality
all individuals: 901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 169
allele frequency: 1.639821463225306e-2
allele num: 10306
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12614
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.820646506777894e-4
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.508e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 3.538928e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

GenotypeQuality
all individuals: 2532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42036
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65354
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737921445950643e-4
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

DP
type: SiteQuality
SIO_000300: 3.51811e6

QD
type: SiteQuality
SIO_000300: 1.37e1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 5735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
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variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 567
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variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529987760097919e-5
allele num: 65360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.519733e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.039e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.965e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 4.777e0

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42037
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.476447071093343e-4
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

FS
type: SiteQuality
SIO_000300: 4.777e0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 3.519733e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.965e0

QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2309
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variant carriers: 0

GenotypeQuality
all individuals: 1949
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variant carriers: 0

GenotypeQuality
all individuals: 1486
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variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.188259709457457e-4
allele num: 13492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 3.523018e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42035
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.578614816397546e-5
allele num: 65522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.042390548992356e-3
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.160092807424594e-3
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.164e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.399e0

DP
type: SiteQuality
SIO_000300: 3.525758e6

GenotypeQuality
all individuals: 42030
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047572608417395e-5
allele num: 65626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.528728e6

FS
type: SiteQuality
SIO_000300: 1.0009e1

QD
type: SiteQuality
SIO_000300: 1.079e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.679e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 1922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 6722
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variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42029
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040992579978105e-5
allele num: 65768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.607e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 3.534464e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.099e0

VQSLOD
type: SiteQuality
SIO_000300: -5.326e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.324e0

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
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variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
all individuals: 7488
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GenotypeQuality
all individuals: 1514
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
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SIO_000300: 1.203e1

BaseQRankSum
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SIO_000300: -4.753e0

VQSLOD
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SIO_000300: -9.24e-2

MQ
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SIO_000300: 5.902e1

FS
type: SiteQuality
SIO_000300: 3.911e0

ClippingRankSum
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SIO_000300: -1.94e0

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 3.549428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.040836051709557e-5
allele num: 66216
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.280245807194981e-4
allele num: 15622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.18e-1

FS
type: SiteQuality
SIO_000300: 1.739e0

ClippingRankSum
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SIO_000300: -1.201e0

VQSLOD
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SIO_000300: 1.42e0

MQRankSum
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SIO_000300: 8.19e-1

MQ
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SIO_000300: 5.955e1

DP
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QD
type: SiteQuality
SIO_000300: 1.197e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 3.571835e6

ReadPosRankSum
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SIO_000300: 1.02e0

MQ
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QD
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FS
type: SiteQuality
SIO_000300: 1.912e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.199e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.572247e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.944e0

VQSLOD
type: SiteQuality
SIO_000300: -8.604000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 3.573823e6

QD
type: SiteQuality
SIO_000300: 1.426e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
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SIO_000300: 3.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.73e0

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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DP
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.003724618526973e-5
allele num: 66584
num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
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DP
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Other
type: Population
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African
type: Population
allele count: 12
allele frequency: 1.154956689124158e-3
allele num: 10390
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Latino
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.878e0

VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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SIO_000300: 1.268e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.14e-1

DP
type: SiteQuality
SIO_000300: 3.572989e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 10
allele frequency: 1.156336725254394e-3
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 2.25e-1

ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

DP
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SIO_000300: 3.573329e6

ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -1.39e-1

MQ
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SIO_000300: 5.968e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.32e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 3.571445e6

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

East Asian
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allele num: 8646
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.521e0

QD
type: SiteQuality
SIO_000300: 1.308e1

BaseQRankSum
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SIO_000300: -5.803e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66592
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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FS
type: SiteQuality
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

African
type: Population
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allele frequency: 1.944768572539868e-4
allele num: 10284
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.004536850644473e-5
allele num: 66566
num of homozygotes: 0

South Asian
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East Asian
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allele count: 7
allele frequency: 8.099976857208979e-4
allele num: 8642
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European (Finnish)
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num of homozygotes: 0

DP
type: SiteQuality
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FS
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MQ
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66568
num of homozygotes: 0

Other
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FS
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
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Latino
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allele frequency: 0.0e0
allele num: 11560
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South Asian
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allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Finnish)
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VQSLOD
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FS
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 16492
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Other
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.81e-1

MQ
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SIO_000300: 5.954e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

DP
type: SiteQuality
SIO_000300: 3.555111e6

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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QD
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ClippingRankSum
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SIO_000300: 7.81e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.012506012506013e-5
allele num: 66528
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Other
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allele num: 908
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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African
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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FS
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 3.550087e6

QD
type: SiteQuality
SIO_000300: 1.118e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007971123477215e-5
allele num: 66490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.649e1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 3.547091e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5647
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508113651444773e-5
allele num: 66308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.507e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.531937e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

GenotypeQuality
all individuals: 520
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508113651444773e-5
allele num: 66308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.507e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.643e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

DP
type: SiteQuality
SIO_000300: 3.531937e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 67
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 938
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.785697755149271e-4
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.359e1

MQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

DP
type: SiteQuality
SIO_000300: 3.529457e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

GenotypeQuality
all individuals: 1502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
all individuals: 925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.873294346978557e-4
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

QD
type: SiteQuality
SIO_000300: 1.773e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

DP
type: SiteQuality
SIO_000300: 3.527579e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 4885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 854
bin: 4.75e1
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GenotypeQuality
all individuals: 42002
bin: 9.75e1
variant carriers: 13

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.660377358490566e-4
allele num: 66250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 3.527579e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.773e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 99

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 293

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 114

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 415

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 263

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 18

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 74

GenotypeQuality
all individuals: 241
bin: 5.75e1
variant carriers: 204

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 65
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variant carriers: 43

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 67

GenotypeQuality
all individuals: 84
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variant carriers: 20

GenotypeQuality
all individuals: 792
bin: 6.75e1
variant carriers: 395

GenotypeQuality
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variant carriers: 46968

GenotypeQuality
all individuals: 411
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variant carriers: 245

GenotypeQuality
all individuals: 729
bin: 7.75e1
variant carriers: 448

GenotypeQuality
all individuals: 1358
bin: 6.25e1
variant carriers: 369

GenotypeQuality
all individuals: 729
bin: 8.25e1
variant carriers: 453

Latino
type: Population
allele count: 8602
allele frequency: 7.442464094133934e-1
allele num: 11558
num of homozygotes: 3212

African
type: Population
allele count: 6870
allele frequency: 6.74852652259332e-1
allele num: 10180
num of homozygotes: 2310

South Asian
type: Population
allele count: 8815
allele frequency: 5.384850335980452e-1
allele num: 16370
num of homozygotes: 2409

Other
type: Population
allele count: 537
allele frequency: 5.953436807095344e-1
allele num: 902
num of homozygotes: 165

European (Non-Finnish)
type: Population
allele count: 38264
allele frequency: 5.779885804054258e-1
allele num: 66202
num of homozygotes: 11087

East Asian
type: Population
allele count: 5726
allele frequency: 6.651951672862454e-1
allele num: 8608
num of homozygotes: 1879

European (Finnish)
type: Population
allele count: 4244
allele frequency: 6.422518159806295e-1
allele num: 6608
num of homozygotes: 1378

BaseQRankSum
type: SiteQuality
SIO_000300: -4.425e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

FS
type: SiteQuality
SIO_000300: 1.179e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 3.427131e6

QD
type: SiteQuality
SIO_000300: 2.39e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525646111128063e-5
allele num: 65546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -7.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.766e1

DP
type: SiteQuality
SIO_000300: 2.735406e6

GenotypeQuality
all individuals: 2224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525646111128063e-5
allele num: 65546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

QD
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 2.735406e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.731308e6

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 9.375e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531862745098039e-5
allele num: 65280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

DP
type: SiteQuality
SIO_000300: 2.724222e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
all individuals: 456
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variant carriers: 0

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 99
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 93
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0