X-35989708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989708
    reference: chr 0
allele count: 9
allele frequency: 7.42145625463841e-4
allele num: 12127
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.1976G>A
  hgvsp: ENSP00000297866.5:p.Arg659His
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.1976G>A
  hgvsp: ENSP00000433564.1:p.Arg659His
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg659His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-35989714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989714
    reference: chr 0
allele count: 3
allele frequency: 1.882293888819174e-4
allele num: 15938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.1982A>G
  hgvsp: ENSP00000433564.1:p.Tyr661Cys
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.1982A>G
  hgvsp: ENSP00000297866.5:p.Tyr661Cys
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr661Cys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-35989720-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989720
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989720
    reference: chr 0
allele count: 1
allele frequency: 5.159692482328053e-5
allele num: 19381
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.1988A>T
  hgvsp: ENSP00000433564.1:p.Tyr663Phe
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.1988A>T
  hgvsp: ENSP00000297866.5:p.Tyr663Phe
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Tyr663Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-35989733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989733
    reference: chr 0
allele count: 1
allele frequency: 3.342804613070366e-5
allele num: 29915
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2001C>T
  hgvsp: ENST00000297866.5:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2001C>T
  hgvsp: ENST00000493930.1:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2761
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genotype depth: GenotypeDepth
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hgvs: p.Asp667Asp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-35989747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989747
    reference: chr 0
allele count: 6
allele frequency: 1.355380862022228e-4
allele num: 44268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2015C>T
  hgvsp: ENSP00000433564.1:p.Pro672Leu
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2015C>T
  hgvsp: ENSP00000297866.5:p.Pro672Leu
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro672Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

X-35989748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989748
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989748
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45622
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2016A>G
  hgvsp: ENST00000297866.5:c.2016A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2016A>G
  hgvsp: ENST00000493930.1:c.2016A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro672Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

X-35989755-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989755
    reference: chr 0
allele count: 1
allele frequency: 1.934797329979685e-5
allele num: 51685
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2023G>C
  hgvsp: ENSP00000297866.5:p.Gly675Arg
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2023G>C
  hgvsp: ENSP00000433564.1:p.Gly675Arg
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly675Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-35989763-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989763
    reference: chr 0
allele count: 1
allele frequency: 1.745749100939213e-5
allele num: 57282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2031G>C
  hgvsp: ENSP00000297866.5:p.Lys677Asn
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2031G>C
  hgvsp: ENSP00000433564.1:p.Lys677Asn
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Lys677Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
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site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
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site quality: ReadPosRankSum

X-35989781-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989781
    reference: chr 0
allele count: 1
allele frequency: 1.463122009744393e-5
allele num: 68347
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2049A>G
  hgvsp: ENST00000297866.5:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2049A>G
  hgvsp: ENST00000493930.1:c.2049A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu683Glu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-35989781-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989781
    reference: chr 0
allele count: 2
allele frequency: 2.926244019488785e-5
allele num: 68347
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2049A>T
  hgvsp: ENSP00000433564.1:p.Glu683Asp
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2049A>T
  hgvsp: ENSP00000297866.5:p.Glu683Asp
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu683Asp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

X-35989784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989784
    reference: chr 0
allele count: 2
allele frequency: 2.830335536277826e-5
allele num: 70663
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2052G>A
  hgvsp: ENST00000297866.5:c.2052G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2052G>A
  hgvsp: ENST00000493930.1:c.2052G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala684Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-35989788-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989788
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989788
    reference: chr 0
allele count: 83
allele frequency: 1.136363636363636e-3
allele num: 73040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2056A>G
  hgvsp: ENSP00000433564.1:p.Ile686Val
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2056A>G
  hgvsp: ENSP00000297866.5:p.Ile686Val
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ile686Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
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site quality: VQSLOD
site quality: QD

X-35989798-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989798
    reference: chr 0
allele count: 1
allele frequency: 1.291338989398107e-5
allele num: 77439
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2066A>T
  hgvsp: ENSP00000297866.5:p.Glu689Val
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2066A>T
  hgvsp: ENSP00000433564.1:p.Glu689Val
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu689Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-35989808-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989808
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989808
    reference: chr 0
allele count: 1
allele frequency: 1.24180409298629e-5
allele num: 80528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2076A>G
  hgvsp: ENST00000493930.1:c.2076A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2076A>G
  hgvsp: ENST00000297866.5:c.2076A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 308
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genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6687
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser692Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

X-35989824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989824
    reference: chr 0
allele count: 1
allele frequency: 1.199472232217824e-5
allele num: 83370
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2092A>G
  hgvsp: ENSP00000297866.5:p.Arg698Gly
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2092A>G
  hgvsp: ENSP00000433564.1:p.Arg698Gly
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 428
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg698Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

X-35989829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989829
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989829
    reference: chr 0
allele count: 3
allele frequency: 3.574194317031036e-5
allele num: 83935
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2097G>A
  hgvsp: ENST00000493930.1:c.2097G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2097G>A
  hgvsp: ENST00000297866.5:c.2097G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala699Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-35989834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989834
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989834
    reference: chr 0
allele count: 1
allele frequency: 1.185100911342601e-5
allele num: 84381
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2102G>A
  hgvsp: ENSP00000297866.5:p.Arg701Gln
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2102G>A
  hgvsp: ENSP00000433564.1:p.Arg701Gln
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 2718
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg701Gln
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-35989848-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989848
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989848
    reference: chr 0
allele count: 1
allele frequency: 1.175378177928749e-5
allele num: 85079
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2116A>T
  hgvsp: ENSP00000433564.1:p.Arg706Trp
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2116A>T
  hgvsp: ENSP00000297866.5:p.Arg706Trp
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 51564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg706Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-35989871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989871
    reference: chr 0
allele count: 1
allele frequency: 1.176415227518705e-5
allele num: 85004
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2139A>G
  hgvsp: ENST00000297866.5:c.2139A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2139A>G
  hgvsp: ENST00000493930.1:c.2139A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu713Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-35989881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989881
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989881
    reference: chr 0
allele count: 6
allele frequency: 7.070219058953843e-5
allele num: 84863
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2149A>G
  hgvsp: ENSP00000297866.5:p.Arg717Gly
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2149A>G
  hgvsp: ENSP00000433564.1:p.Arg717Gly
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg717Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-35989893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989893
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989893
    reference: chr 0
allele count: 1
allele frequency: 1.190589579959996e-5
allele num: 83992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+4C>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+4C>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: c.2157+4C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-35989894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989894
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989894
    reference: chr 0
allele count: 1
allele frequency: 1.191142663156766e-5
allele num: 83953
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+5G>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+5G>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.2157+5G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

X-35989899-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989899
    reference: chr 0
allele count: 2
allele frequency: 2.397794029492867e-5
allele num: 83410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+10A>G
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+10A>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8995
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
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site quality: DP

X-35989906-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989906
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989906
    reference: chr 0
allele count: 11
allele frequency: 1.333430310083157e-4
allele num: 82494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+17A>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+17A>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 1.741884402216944e-3
  allele num: 6315
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-35989907-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989907
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989906
    reference: chr 0
allele count: 2
allele frequency: 2.425477212641587e-5
allele num: 82458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+19delA
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+19delA
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4423
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: CA
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
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site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

X-35989912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989912
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989912
    reference: chr 0
allele count: 1
allele frequency: 1.225415109368299e-5
allele num: 81605
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+23G>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+23G>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.240243738518751e-5
  allele num: 44638
  num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-35989914-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989914
    reference: chr 0
allele count: 1
allele frequency: 1.234080363313259e-5
allele num: 81032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+25T>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+25T>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 6201
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
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site quality: VQSLOD
site quality: InbreedingCoeff
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site quality: QD
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X-35989914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989914
    reference: chr 0
allele count: 1
allele frequency: 1.234080363313259e-5
allele num: 81032
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+25T>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+25T>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-35989916-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989916
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989916
    reference: chr 0
allele count: 1
allele frequency: 1.244167962674961e-5
allele num: 80375
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+27A>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+27A>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
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site quality: InbreedingCoeff
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site quality: DP

X-35989922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989922
    reference: chr 0
allele count: 7
allele frequency: 8.885391147611733e-5
allele num: 78781
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+33C>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+33C>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7715
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

X-35989923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989923
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989923
    reference: chr 0
allele count: 34
allele frequency: 4.333031720341035e-4
allele num: 78467
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2157+34G>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2157+34G>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 386
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 265
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 133
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 236
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
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  variant carriers: 2
num of homozygotes: 0
population: African
  type: Population
  allele count: 30
  allele frequency: 3.905233012236397e-3
  allele num: 7682
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

X-35989940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989940
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989940
    reference: chr 0
allele count: 1
allele frequency: 1.383125864453665e-5
allele num: 72300
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-46C>G
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-46C>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 260
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 39034
  num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-35989941-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989941
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989941
    reference: chr 0
allele count: 8
allele frequency: 1.110432513463994e-4
allele num: 72044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-45T>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-45T>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 8
  allele frequency: 1.042345276872964e-3
  allele num: 7675
  num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-35989946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989946
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989946
    reference: chr 0
allele count: 1
allele frequency: 1.429020549315499e-5
allele num: 69978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-40C>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-40C>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8195
  num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-35989950-TAATG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989950
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989946
    reference: chr 0
allele count: 1
allele frequency: 1.464879513660001e-5
allele num: 68265
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-32_2158-29delGAAT
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-32_2158-29delGAAT
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6976
  num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: TAATG
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-35989956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989956
    reference: chr 0
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-30A>G
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-30A>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4977
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

X-35989964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989964
    reference: chr 0
allele count: 31
allele frequency: 4.907159704304054e-4
allele num: 63173
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-22G>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-22G>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 2.115059221658206e-4
  allele num: 4728
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

X-35989973-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989973
    reference: chr 0
allele count: 14
allele frequency: 2.290313609370655e-4
allele num: 61127
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-13T>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-13T>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7417
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-35989975-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989975
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989976
    reference: chr 0
allele count: 1
allele frequency: 1.654150263009892e-5
allele num: 60454
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-5dupT
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-5dupT
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 19275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 6499
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
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X-35989977-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989977
    reference: chr 0
allele count: 1
allele frequency: 1.683076664142052e-5
allele num: 59415
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158-9T>G
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158-9T>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
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  allele num: 462
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population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
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site quality: FS
site quality: MQ
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X-35989986-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989986
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989986
    reference: chr 0
allele count: 1
allele frequency: 1.736683975616957e-5
allele num: 57581
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2158G>T
  hgvsp: ENSP00000297866.5:p.Val720Phe
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2158G>T
  hgvsp: ENSP00000433564.1:p.Val720Phe
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val720Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
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X-35989989-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989989
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989989
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 57148
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2161C>G
  hgvsp: ENSP00000297866.5:p.Leu721Val
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2161C>G
  hgvsp: ENSP00000433564.1:p.Leu721Val
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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hgvs: p.Leu721Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
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site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
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X-35989990-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035989990
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035989990
    reference: chr 0
allele count: 2
allele frequency: 3.507418189470731e-5
allele num: 57022
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2162T>C
  hgvsp: ENSP00000297866.5:p.Leu721Pro
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2162T>C
  hgvsp: ENSP00000433564.1:p.Leu721Pro
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu721Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-35990016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990016
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990016
    reference: chr 0
allele count: 2
allele frequency: 3.712021381243156e-5
allele num: 53879
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2188A>G
  hgvsp: ENSP00000433564.1:p.Thr730Ala
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2188A>G
  hgvsp: ENSP00000297866.5:p.Thr730Ala
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr730Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-35990031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990031
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990031
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 52105
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2203C>T
  hgvsp: ENSP00000297866.5:p.His735Tyr
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2203C>T
  hgvsp: ENSP00000433564.1:p.His735Tyr
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His735Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

X-35990059-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990059
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990059
    reference: chr 0
allele count: 1
allele frequency: 2.163752812878657e-5
allele num: 46216
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2231A>C
  hgvsp: ENSP00000297866.5:p.Lys744Thr
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2231A>C
  hgvsp: ENSP00000433564.1:p.Lys744Thr
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys744Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-35990080-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990080
    reference: chr 0
allele count: 1
allele frequency: 2.43261652233142e-5
allele num: 41108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2252T>C
  hgvsp: ENSP00000433564.1:p.Val751Ala
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2252T>C
  hgvsp: ENSP00000297866.5:p.Val751Ala
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1311
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  variant carriers: 0
hgvs: p.Val751Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-35990094-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990094
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 35187
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2254+12C>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2254+12C>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 614
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20595
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 283
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-35990095-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990095
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990095
    reference: chr 0
allele count: 1
allele frequency: 2.827254735651682e-5
allele num: 35370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2254+13A>G
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2254+13A>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6752
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  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4857
  num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-35990123-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990123
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990123
    reference: chr 0
allele count: 3
allele frequency: 3.036744609778318e-4
allele num: 9879
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2254+41A>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2254+41A>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23773
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 211
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-35990124-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990124
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990123
    reference: chr 0
allele count: 2451
allele frequency: 2.153021784961349e-1
allele num: 11384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2254+50delA
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2254+50delA
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 1437
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  variant carriers: 290
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1805
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 25395
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 64
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
  all individuals: 130
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1741
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  variant carriers: 946
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1305
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  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 9.75e1
  variant carriers: 1000
num of homozygotes: 357
population: European (Non-Finnish)
  type: Population
  allele count: 421
  allele frequency: 8.071319018404909e-2
  allele num: 5216
  num of homozygotes: 20
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: TA
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-35990124-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035990124
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035990125
    reference: chr 0
allele count: 5
allele frequency: 4.392129304286718e-4
allele num: 11384
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2254+50dupA
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2254+50dupA
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.75e1
  variant carriers: 2
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population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
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site quality: VQSLOD
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X-35990133-G-T
type: Variant
location: Region
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allele count: 0
allele frequency: 0.0e0
allele num: 10787
alternate allele: T
annotation: Annotation
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  gene symbol: CXorf22
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annotation: Annotation
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  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2254+51G>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
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population: Latino
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population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
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X-35993213-A-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 0
allele frequency: 0.0e0
allele num: 74932
alternate allele: T
annotation: Annotation
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  gene symbol: CXorf22
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  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000165164
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  gene symbol: CXorf22
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  variant of: http://identifiers.org/hgnc/28546
canonical: true
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population: European (Finnish)
population: African
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population: South Asian
reference allele: A
site quality: MQ
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X-35993226-T-A
type: Variant
location: Region
  begin: Position
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    position: 24035993226
    reference: chr 0
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allele count: 1
allele frequency: 1.326189592064082e-5
allele num: 75404
alternate allele: A
annotation: Annotation
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  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2255-38T>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-136T>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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X-35993239-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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allele count: 1
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allele num: 77060
alternate allele: A
annotation: Annotation
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  gene symbol: CXorf22
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  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
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  gene symbol: CXorf22
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  variant of: http://identifiers.org/hgnc/28546
canonical: true
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6207
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
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site quality: QD

X-35993239-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993239
    reference: chr 0
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    type: ExactPosition
    position: 24035993239
    reference: chr 0
allele count: 139
allele frequency: 1.803789255125876e-3
allele num: 77060
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2255-25C>G
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-123C>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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  allele count: 5
  allele frequency: 5.56049822064057e-4
  allele num: 8992
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population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
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site quality: DP
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X-35993244-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993244
    reference: chr 0
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    type: ExactPosition
    position: 24035993244
    reference: chr 0
allele count: 2
allele frequency: 2.552680953171068e-5
allele num: 78349
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
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  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-118T>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2255-20T>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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  allele num: 6424
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
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site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
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X-35993250-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993250
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993250
    reference: chr 0
allele count: 1
allele frequency: 1.255555834567963e-5
allele num: 79646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-112T>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2255-14T>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
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site quality: FS
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X-35993252-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993252
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993253
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 79484
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-102dupT
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2255-4dupT
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6611
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
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site quality: BaseQRankSum

X-35993261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993261
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993261
    reference: chr 0
allele count: 1
allele frequency: 1.204050425631826e-5
allele num: 83053
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-101C>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2255-3C>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.2255-3C>T
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6532
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
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site quality: FS

X-35993285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993285
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993285
    reference: chr 0
allele count: 1
allele frequency: 1.163805644457376e-5
allele num: 85925
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-77G>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2276G>A
  hgvsp: ENSP00000297866.5:p.Gly759Asp
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly759Asp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47401
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-35993292-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993292
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993292
    reference: chr 0
allele count: 1
allele frequency: 1.158064179916851e-5
allele num: 86351
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2283T>C
  hgvsp: ENST00000297866.5:c.2283T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-70T>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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hgvs: p.Ile761Ile
num of homozygotes: 0
population: European (Finnish)
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  allele frequency: 0.0e0
  allele num: 4513
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
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site quality: VQSLOD
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X-35993294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993294
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993294
    reference: chr 0
allele count: 2
allele frequency: 2.313663338847564e-5
allele num: 86443
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-68G>A
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2285G>A
  hgvsp: ENSP00000297866.5:p.Cys762Tyr
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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  allele num: 8450
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population: Other
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population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-35993294-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993294
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993294
    reference: chr 0
allele count: 1
allele frequency: 1.156831669423782e-5
allele num: 86443
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-68G>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2285G>C
  hgvsp: ENSP00000297866.5:p.Cys762Ser
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1896
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genotype quality: GenotypeQuality
  all individuals: 17
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys762Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9299
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-35993311-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993311
    reference: chr 0
allele count: 118
allele frequency: 1.354764638346728e-3
allele num: 87100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2302A>T
  hgvsp: ENSP00000297866.5:p.Thr768Ser
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-51A>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 655
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  variant carriers: 49
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 225
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genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 7
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1372
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Thr768Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.015022330491271e-4
  allele num: 9852
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-35993312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993312
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993312
    reference: chr 0
allele count: 1
allele frequency: 1.147644459746371e-5
allele num: 87135
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-50C>T
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2303C>T
  hgvsp: ENSP00000297866.5:p.Thr768Ile
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1910
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  variant carriers: 0
hgvs: p.Thr768Ile
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 625
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-35993341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993341
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993341
    reference: chr 0
allele count: 1
allele frequency: 1.144492131616595e-5
allele num: 87375
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2332C>T
  hgvsp: ENSP00000297866.5:p.Pro778Ser
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-21C>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 138
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genotype quality: GenotypeQuality
  all individuals: 93
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 133
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  variant carriers: 0
hgvs: p.Pro778Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 626
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

X-35993344-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993344
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993344
    reference: chr 0
allele count: 164
allele frequency: 1.876666399661285e-3
allele num: 87389
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-18A>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2335A>C
  hgvsp: ENSP00000297866.5:p.Met779Leu
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Met779Leu
num of homozygotes: 2
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.994415636218588e-4
  allele num: 10028
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

X-35993345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993345
    reference: chr 0
allele count: 1
allele frequency: 1.144243311897842e-5
allele num: 87394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-17T>C
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2336T>C
  hgvsp: ENSP00000297866.5:p.Met779Thr
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Met779Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47812
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-35993349-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993349
    reference: chr 0
allele count: 1
allele frequency: 1.144046951686897e-5
allele num: 87409
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2340T>A
  hgvsp: ENSP00000297866.5:p.His780Gln
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2255-13T>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His780Gln
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6610
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-35993366-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993366
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993366
    reference: chr 0
allele count: 1
allele frequency: 1.144020775417282e-5
allele num: 87411
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2357A>G
  hgvsp: ENSP00000297866.5:p.Asp786Gly
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.2259A>G
  hgvsp: ENST00000493930.1:c.2259A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp786Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-35993391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993391
    reference: chr 0
allele count: 1
allele frequency: 1.144505230388903e-5
allele num: 87374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2382G>A
  hgvsp: ENST00000297866.5:c.2382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 5566
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 5409
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys794Lys
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6603
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-35993395-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993395
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993395
    reference: chr 0
allele count: 1
allele frequency: 1.144518329461046e-5
allele num: 87373
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2386A>C
  hgvsp: ENSP00000297866.5:p.Asn796His
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.*23A>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 800
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 185
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genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1359
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 78
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genotype quality: GenotypeQuality
  all individuals: 42207
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  variant carriers: 0
hgvs: p.Asn796His
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4521
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

X-35993406-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993406
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993406
    reference: chr 0
allele count: 1
allele frequency: 1.14544913060411e-5
allele num: 87302
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2397A>G
  hgvsp: ENST00000297866.5:c.2397A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.*34A>G
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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genotype depth: GenotypeDepth
  all individuals: 2548
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 91
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 5566
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5388
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser799Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8488
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-35993409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993409
    reference: chr 0
allele count: 189
allele frequency: 2.166064981949458e-3
allele num: 87255
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2400C>T
  hgvsp: ENST00000297866.5:c.2400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 230
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
  all individuals: 5351
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 116
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  variant carriers: 1
hgvs: p.Tyr800Tyr
num of homozygotes: 1
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10000
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-35993410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993410
    reference: chr 0
allele count: 1
allele frequency: 1.145947928126146e-5
allele num: 87264
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2401G>A
  hgvsp: ENSP00000297866.5:p.Val801Met
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 662
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5567
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val801Met
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6598
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-35993410-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24035993410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24035993410
    reference: chr 0
allele count: 5
allele frequency: 5.72973964063073e-5
allele num: 87264
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000297866
  ensembl transcript: ENST00000297866
  gene symbol: CXorf22
  hgvsc: ENST00000297866.5:c.2401G>C
  hgvsp: ENSP00000297866.5:p.Val801Leu
  variant of: http://identifiers.org/hgnc/28546
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165164
  ensembl protein: ENSP00000433564
  ensembl transcript: ENST00000493930
  gene symbol: CXorf22
  hgvsc: ENST00000493930.1:c.*38G>C
  variant of: http://identifiers.org/hgnc/28546
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val801Leu
num of homozygotes: 0
reference allele: G

South Asian
type: Population
allele count: 7
allele frequency: 4.169148302561048e-3
allele num: 1679
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.25e-3
allele num: 160
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.459948320413437e-4
allele num: 1548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

DP
type: SiteQuality
SIO_000300: 3.81386e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.946e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 187
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 693
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1687
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.589804953930837e-4
allele num: 8357
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 809
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2139
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.024e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.512e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 4.39471e5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 865
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.675858732462506e-5
allele num: 10335
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.796e1

DP
type: SiteQuality
SIO_000300: 4.89725e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.872e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2685
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2357
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3447
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.270378730875344e-5
allele num: 15948
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 6.14098e5

VQSLOD
type: SiteQuality
SIO_000300: -1.373e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5303
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.030502885408079e-3
allele num: 4852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.29553264604811e-5
allele num: 23280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 367
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.466e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 2.252e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 7.69406e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23989
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 379
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.139e1

VQSLOD
type: SiteQuality
SIO_000300: -5.557e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 7.82721e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

African
type: Population
allele count: 1
allele frequency: 1.759014951627089e-4
allele num: 5685
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27233
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 8.49735e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

QD
type: SiteQuality
SIO_000300: 6.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30253
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.656042496679947e-4
allele num: 3765
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7191
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 453
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.14679e5

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.382934587194026e-4
allele num: 7231
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8227
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3831
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
type: SiteQuality
SIO_000300: 4.784e0

VQSLOD
type: SiteQuality
SIO_000300: -1.293e0

QD
type: SiteQuality
SIO_000300: 1.802e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.148e0

DP
type: SiteQuality
SIO_000300: 1.061536e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

South Asian
type: Population
allele count: 2
allele frequency: 2.765869174388052e-4
allele num: 7231
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8227
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3831
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.784e0

VQSLOD
type: SiteQuality
SIO_000300: -1.293e0

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

DP
type: SiteQuality
SIO_000300: 1.061536e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

QD
type: SiteQuality
SIO_000300: 1.802e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.148e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7487
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3929
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.270092226613966e-5
allele num: 37950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.172e0

DP
type: SiteQuality
SIO_000300: 1.098166e6

QD
type: SiteQuality
SIO_000300: 2.472e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.323e0

VQSLOD
type: SiteQuality
SIO_000300: -1.894e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

Latino
type: Population
allele count: 1
allele frequency: 1.157273463719477e-4
allele num: 8641
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7727
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39341
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 82
allele frequency: 1.118385160938352e-2
allele num: 7332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
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DP
type: SiteQuality
SIO_000300: 1.130234e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.115e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

VQSLOD
type: SiteQuality
SIO_000300: 5.99e0

QD
type: SiteQuality
SIO_000300: 1.93e1

European (Non-Finnish)
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allele count: 1
allele frequency: 2.380215647537667e-5
allele num: 42013
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 8913
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4225
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South Asian
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East Asian
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Other
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QD
type: SiteQuality
SIO_000300: 1.648e1

VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 3.561e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4355
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7864
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Latino
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allele frequency: 1.099505222649808e-4
allele num: 9095
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43798
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East Asian
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South Asian
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Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.132e0

MQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.250335e6

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9205
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East Asian
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allele frequency: 0.0e0
allele num: 6356
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45380
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South Asian
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allele count: 1
allele frequency: 1.08201687946332e-4
allele num: 9242
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4455
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.7065e1

DP
type: SiteQuality
SIO_000300: 1.299979e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -4.322e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

MQRankSum
type: SiteQuality
SIO_000300: -2.768e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.784e0

QD
type: SiteQuality
SIO_000300: 1.386e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.377229651353658e-5
allele num: 45691
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 610
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East Asian
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allele frequency: 0.0e0
allele num: 6402
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9218
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African
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allele count: 0
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South Asian
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allele count: 1
allele frequency: 1.067577666275221e-4
allele num: 9367
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4470
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 9.308e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

DP
type: SiteQuality
SIO_000300: 1.311114e6

VQSLOD
type: SiteQuality
SIO_000300: -2.833e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 3.294e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
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Other
type: Population
allele count: 0
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allele num: 613
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6448
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4479
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African
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allele count: 0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9443
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.1767522855899e-5
allele num: 45940
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VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.318037e6

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

QD
type: SiteQuality
SIO_000300: 1.76e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46371
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8281
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6493
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Latino
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allele count: 1
allele frequency: 1.079447322970639e-4
allele num: 9264
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South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 1.003e1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e0

FS
type: SiteQuality
SIO_000300: 5.498e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.325393e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.154336679736309e-5
allele num: 46418
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
type: Population
allele count: 0
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allele num: 618
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African
type: Population
allele count: 0
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allele num: 8283
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VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 1.615e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.048e1

DP
type: SiteQuality
SIO_000300: 1.315839e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

South Asian
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allele frequency: 0.0e0
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East Asian
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allele num: 6488
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4495
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8275
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.294163323411415e-4
allele num: 46362
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VQSLOD
type: SiteQuality
SIO_000300: -5.986e-1

DP
type: SiteQuality
SIO_000300: 1.31168e6

FS
type: SiteQuality
SIO_000300: 5.923e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.580000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.271e1

East Asian
type: Population
allele count: 0
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allele num: 6435
num of homozygotes: 0

Latino
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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allele num: 615
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.175095160413268e-5
allele num: 45975
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8191
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
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South Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.29488e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9095
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.177178811695805e-5
allele num: 45931
num of homozygotes: 0

East Asian
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allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4471
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.454e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.191204505116462e-5
allele num: 45637
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
type: Population
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Other
type: Population
allele count: 0
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allele num: 605
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East Asian
type: Population
allele count: 1
allele frequency: 1.564945226917058e-4
allele num: 6390
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4457
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

QD
type: SiteQuality
SIO_000300: 1.759e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 1.278007e6

Latino
type: Population
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.096e-1

FS
type: SiteQuality
SIO_000300: 6.0e-1

DP
type: SiteQuality
SIO_000300: 1.257065e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.564e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

European (Non-Finnish)
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allele count: 0
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East Asian
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allele frequency: 3.168065895770632e-4
allele num: 6313
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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allele num: 601
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South Asian
type: Population
allele count: 0
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allele num: 8791
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DP
type: SiteQuality
SIO_000300: 1.257547e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.93e-1

MQ
type: SiteQuality
SIO_000300: 6.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.162e0

QD
type: SiteQuality
SIO_000300: 1.429e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 593
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4389
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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South Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.698e0

DP
type: SiteQuality
SIO_000300: 1.234939e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.374e1

MQRankSum
type: SiteQuality
SIO_000300: -1.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.256674113691242e-5
allele num: 44313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4363
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7889
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

FS
type: SiteQuality
SIO_000300: 3.333e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.364e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.144e1

DP
type: SiteQuality
SIO_000300: 1.219923e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4363
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.612643122077084e-4
allele num: 6201
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.333e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.364e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 2.144e1

DP
type: SiteQuality
SIO_000300: 1.219923e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4339
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.624695369618196e-4
allele num: 6155
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.12e1

FS
type: SiteQuality
SIO_000300: 7.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

DP
type: SiteQuality
SIO_000300: 1.203663e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4267
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.30448941614329e-5
allele num: 42990
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.63460140537921e-4
allele num: 8254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6045
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
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MQRankSum
type: SiteQuality
SIO_000300: -1.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

DP
type: SiteQuality
SIO_000300: 1.172203e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.611e0

VQSLOD
type: SiteQuality
SIO_000300: -2.084e0

QD
type: SiteQuality
SIO_000300: 2.339e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.121201928467317e-4
allele num: 8919
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.984216647283602e-4
allele num: 6019
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.992e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.165028e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.606e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7219
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.819174094960888e-4
allele num: 5497
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7657
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3943
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 5.006e0

QD
type: SiteQuality
SIO_000300: 1.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.325e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.183e0

DP
type: SiteQuality
SIO_000300: 1.032824e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8395
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.841e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

QD
type: SiteQuality
SIO_000300: 2.58e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.024319e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.382e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7081
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.662123309551698e-5
allele num: 37564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.592e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.335e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.3551e1

QD
type: SiteQuality
SIO_000300: 9.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 9.88052e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8069
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.359434475258292e-4
allele num: 7356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.60439e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

MQ
type: SiteQuality
SIO_000300: 5.679e1

FS
type: SiteQuality
SIO_000300: 3.187e0

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.515e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7847
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7189
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
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African
type: Population
allele count: 1
allele frequency: 1.466060694912769e-4
allele num: 6821
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35036
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.52e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.908e1

DP
type: SiteQuality
SIO_000300: 9.26681e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33293
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 4.126351735913489e-3
allele num: 7028
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.08768267223382e-3
allele num: 479
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.01305e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.919e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

FS
type: SiteQuality
SIO_000300: 3.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.063e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.888086642599278e-4
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num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 2.622950819672131e-3
allele num: 4575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31958
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.77556e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 3.91e-1

QD
type: SiteQuality
SIO_000300: 1.559e1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3223
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.45475705557172e-4
allele num: 6874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7371
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.322e0

FS
type: SiteQuality
SIO_000300: 1.906e0

MQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQ
type: SiteQuality
SIO_000300: 6.033e1

QD
type: SiteQuality
SIO_000300: 1.597e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 8.7288e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.004e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4467
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.241911430979706e-5
allele num: 30846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3131
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.62881e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -1.087e0

FS
type: SiteQuality
SIO_000300: 5.008e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

QD
type: SiteQuality
SIO_000300: 5.87e0

VQSLOD
type: SiteQuality
SIO_000300: -2.656e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29627
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.571338780641106e-4
allele num: 6364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 447
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6765
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2968
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.54269e5

QD
type: SiteQuality
SIO_000300: 1.171e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29359
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2923
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6747
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 8.50614e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.182e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29269
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.148118998898158e-4
allele num: 6353
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6992
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.49397e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.643e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 1.019e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2651
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.65537156851994e-5
allele num: 27357
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.599232368463138e-4
allele num: 6253
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

QD
type: SiteQuality
SIO_000300: 1.802e1

DP
type: SiteQuality
SIO_000300: 8.3347e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.068e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3921
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6317
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

QD
type: SiteQuality
SIO_000300: 1.575e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 8.19541e5

South Asian
type: Population
allele count: 1
allele frequency: 1.640419947506562e-4
allele num: 6096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2192
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.07e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.406e0

QD
type: SiteQuality
SIO_000300: 1.322e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 7.24334e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1927
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19917
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.73370319001387e-4
allele num: 5768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5455
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4687
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.1578e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 1.422e0

QD
type: SiteQuality
SIO_000300: 1.452e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3925
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2403
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.32354e5

QD
type: SiteQuality
SIO_000300: 1.493e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 281
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3941
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5433
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.963740458015267e-5
allele num: 16768
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.31257e5

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.56e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.177e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 9.00360144057623e-4
allele num: 3332
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 303
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.969999999999999e-2

QD
type: SiteQuality
SIO_000300: 3.065e1

DP
type: SiteQuality
SIO_000300: 2.94432e5

South Asian
type: Population
allele count: 940
allele frequency: 2.42643262777491e-1
allele num: 3874
num of homozygotes: 56

Latino
type: Population
allele count: 100
allele frequency: 2.8328611898017e-1
allele num: 353
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 36
allele frequency: 1.469387755102041e-1
allele num: 245
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African
type: Population
allele count: 782
allele frequency: 6.957295373665481e-1
allele num: 1124
num of homozygotes: 242

Other
type: Population
allele count: 27
allele frequency: 2.25e-1
allele num: 120
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East Asian
type: Population
allele count: 145
allele frequency: 3.207964601769911e-1
allele num: 452
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.034e1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 2.82661e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.386e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 245
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South Asian
type: Population
allele count: 1
allele frequency: 2.581311306143521e-4
allele num: 3874
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African
type: Population
allele count: 1
allele frequency: 8.896797153024911e-4
allele num: 1124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 353
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QD
type: SiteQuality
SIO_000300: 2.034e1

VQSLOD
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SIO_000300: 6.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.386e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 2.82661e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 423
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1090
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4877
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.74814e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 3.131e1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4373
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African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41512
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.801e-1

DP
type: SiteQuality
SIO_000300: 1.31988e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.293995859213251e-4
allele num: 7728
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41789
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

FS
type: SiteQuality
SIO_000300: 3.768e0

MQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.043e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.833e1

DP
type: SiteQuality
SIO_000300: 1.370331e6

Latino
type: Population
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allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7843
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.334921079667507e-5
allele num: 42828
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

DP
type: SiteQuality
SIO_000300: 1.468674e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

QD
type: SiteQuality
SIO_000300: 1.9e1

African
type: Population
allele count: 132
allele frequency: 1.683029453015428e-2
allele num: 7843
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.669842159335015e-5
allele num: 42828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6207
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.9e1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

DP
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SIO_000300: 1.468674e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.581481651165987e-5
allele num: 43654
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4429
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7917
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9041
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 3.136e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

VQSLOD
type: SiteQuality
SIO_000300: -2.857e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

DP
type: SiteQuality
SIO_000300: 1.503885e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
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East Asian
type: Population
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allele num: 6405
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
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European (Non-Finnish)
type: Population
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allele frequency: 2.249516353983894e-5
allele num: 44454
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 6.817e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.62e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 1.535168e6

European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 4445
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East Asian
type: Population
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allele frequency: 0.0e0
allele num: 6399
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44402
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9089
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
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African
type: Population
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allele frequency: 0.0e0
allele num: 7977
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DP
type: SiteQuality
SIO_000300: 1.571992e6

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2183e1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.89e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
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South Asian
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allele frequency: 0.0e0
allele num: 7705
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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African
type: Population
allele count: 0
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allele num: 8160
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Other
type: Population
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allele num: 589
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

DP
type: SiteQuality
SIO_000300: 1.611496e6

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.112e0

FS
type: SiteQuality
SIO_000300: 0.0e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
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Other
type: Population
allele count: 0
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allele num: 614
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South Asian
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allele count: 1
allele frequency: 1.098538943205537e-4
allele num: 9103
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8418
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European (Finnish)
type: Population
allele count: 0
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allele num: 4510
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.983e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.206e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.144e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.807e0

DP
type: SiteQuality
SIO_000300: 1.660191e6

South Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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allele num: 622
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.104554255408704e-5
allele num: 47516
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Latino
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East Asian
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African
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allele num: 8442
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.063e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 3.069e1

DP
type: SiteQuality
SIO_000300: 1.667898e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
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Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.207072088180231e-5
allele num: 47539
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4513
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South Asian
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East Asian
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allele num: 6594
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VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.61e-2

FS
type: SiteQuality
SIO_000300: 4.782e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e0

DP
type: SiteQuality
SIO_000300: 1.670173e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47539
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4513
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African
type: Population
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allele num: 8450
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East Asian
type: Population
allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 622
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DP
type: SiteQuality
SIO_000300: 1.670173e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 4.782e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.61e-2

QD
type: SiteQuality
SIO_000300: 1.426e1

Latino
type: Population
allele count: 3
allele frequency: 3.221303554171588e-4
allele num: 9313
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.6e-3
allele num: 625
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European (Non-Finnish)
type: Population
allele count: 108
allele frequency: 2.26334430077331e-3
allele num: 47717
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African
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allele count: 1
allele frequency: 1.180916391119509e-4
allele num: 8468
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East Asian
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allele count: 0
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European (Finnish)
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allele count: 4
allele frequency: 8.849557522123894e-4
allele num: 4520
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VQSLOD
type: SiteQuality
SIO_000300: 2.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.119e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.592e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.691198e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
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allele count: 0
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Latino
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allele count: 1
allele frequency: 1.073767851390529e-4
allele num: 9313
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East Asian
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allele count: 0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9862
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European (Non-Finnish)
type: Population
allele count: 0
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allele num: 47733
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MQ
type: SiteQuality
SIO_000300: 5.831e1

DP
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QD
type: SiteQuality
SIO_000300: 3.167e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.04e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.103e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47803
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Latino
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allele count: 0
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allele num: 9310
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South Asian
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allele count: 1
allele frequency: 9.979044007584074e-5
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East Asian
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allele count: 0
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African
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allele count: 0
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allele num: 8489
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QD
type: SiteQuality
SIO_000300: 4.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.752e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.447e0

VQSLOD
type: SiteQuality
SIO_000300: -2.679e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: -1.072e0

DP
type: SiteQuality
SIO_000300: 1.688974e6

African
type: Population
allele count: 158
allele frequency: 1.861012956419317e-2
allele num: 8490
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Other
type: Population
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East Asian
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allele count: 0
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Latino
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allele count: 4
allele frequency: 4.296455424274973e-4
allele num: 9310
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47810
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MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.471e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 1.701405e6

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e0

VQSLOD
type: SiteQuality
SIO_000300: 1.706e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

South Asian
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East Asian
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allele count: 0
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Latino
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allele num: 9310
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African
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allele count: 1
allele frequency: 1.177440244907571e-4
allele num: 8493
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 626
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VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 6.503e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

Other
type: Population
allele count: 0
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South Asian
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allele count: 0
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Latino
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allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4519
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47815
num of homozygotes: 0

African
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DP
type: SiteQuality
SIO_000300: 1.695874e6

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47814
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
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FS
type: SiteQuality
SIO_000300: 3.683e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.92e0

QD
type: SiteQuality
SIO_000300: 1.516e1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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allele count: 0
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Other
type: Population
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.092312842616228e-5
allele num: 47794
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VQSLOD
type: SiteQuality
SIO_000300: -4.728e-1

DP
type: SiteQuality
SIO_000300: 1.696078e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 8.645e0

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.502e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.611e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47791
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.962143853357243e-5
allele num: 10038
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.115e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.695662e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

East Asian
type: Population
allele count: 1
allele frequency: 1.514463122822959e-4
allele num: 6603
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47755
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10015
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.824e0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.076e1

DP
type: SiteQuality
SIO_000300: 1.693526e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.23e-1

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.466644317800872e-4
allele num: 47728
num of homozygotes: 0

African
type: Population
allele count: 176
allele frequency: 2.073271292260572e-2
allele num: 8489
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.455083378160301e-4
allele num: 9295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.211e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.703217e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10005
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09507447989776e-5
allele num: 47731
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.533e1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.694364e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1