Y-5369131-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369131
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369131
    reference: chr 0
allele count: 1
allele frequency: 3.003814844852963e-5
allele num: 33291
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3163G>C
  hgvsp: ENSP00000215473.6:p.Gly1055Arg
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3098G>C
  hgvsp: ENSP00000383306.2:p.Gly1034Arg
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 613
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1034Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1870
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff

Y-5369146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369146
    reference: chr 0
allele count: 1
allele frequency: 2.996164908916587e-5
allele num: 33376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3178A>G
  hgvsp: ENSP00000215473.6:p.Ser1060Gly
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3113A>G
  hgvsp: ENSP00000383306.2:p.Ser1039Gly
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser1039Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 272
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

Y-5369160-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369160
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369160
    reference: chr 0
allele count: 1
allele frequency: 2.985609362870962e-5
allele num: 33494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3192A>C
  hgvsp: ENST00000215473.6:c.3192A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3127A>C
  hgvsp: ENST00000400457.2:c.3127A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 321
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  variant carriers: 0
hgvs: p.Gly1043Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

Y-5369188-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369188
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369188
    reference: chr 0
allele count: 2
allele frequency: 5.960363582178513e-5
allele num: 33555
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3155A>G
  hgvsp: ENSP00000383306.2:p.Thr1053Ala
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3220A>G
  hgvsp: ENSP00000215473.6:p.Thr1074Ala
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 319
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  variant carriers: 0
hgvs: p.Thr1053Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2079
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

Y-5369197-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369197
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369197
    reference: chr 0
allele count: 1
allele frequency: 2.980181791089256e-5
allele num: 33555
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3164T>A
  hgvsp: ENSP00000383306.2:p.Ser1056Thr
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3229T>A
  hgvsp: ENSP00000215473.6:p.Ser1077Thr
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27652
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser1056Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 4.482294935006724e-4
  allele num: 2231
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

Y-5369214-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369214
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369213
    reference: chr 0
allele count: 1
allele frequency: 2.984005729291e-5
allele num: 33512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3248delG
  hgvsp: ENSP00000215473.6:p.Gly1083AlafsTer33
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3183delG
  hgvsp: ENSP00000383306.2:p.Gly1062AlafsTer33
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
hgvs: p.Gly1062AlafsTer33
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 4.496402877697842e-4
  allele num: 2224
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: TG
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff

Y-5369215-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369215
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369215
    reference: chr 0
allele count: 1
allele frequency: 2.985074626865672e-5
allele num: 33500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3247G>C
  hgvsp: ENSP00000215473.6:p.Gly1083Arg
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3182G>C
  hgvsp: ENSP00000383306.2:p.Gly1062Arg
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly1062Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2012
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

Y-5369229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369229
    reference: chr 0
allele count: 6
allele frequency: 1.803589142393363e-4
allele num: 33267
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3196G>A
  hgvsp: ENST00000400457.2:c.3196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3261G>A
  hgvsp: ENST00000215473.6:c.3261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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hgvs: p.Glu1066Glu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2001
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

Y-5369259-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369259
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369259
    reference: chr 0
allele count: 4
allele frequency: 1.834021091242549e-4
allele num: 21810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3226T>A
  hgvsp: ENSP00000383306.2:p.Asn1076Lys
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3291T>A
  hgvsp: ENSP00000215473.6:p.Asn1097Lys
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn1076Lys
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1283
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

Y-5369260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369260
    reference: chr 0
allele count: 1
allele frequency: 4.772586264496731e-5
allele num: 20953
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3227C>T
  hgvsp: ENSP00000383306.2:p.Arg1077Cys
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3292C>T
  hgvsp: ENSP00000215473.6:p.Arg1098Cys
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg1077Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1248
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

Y-5369263-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369263
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369263
    reference: chr 0
allele count: 1
allele frequency: 5.636978579481398e-5
allele num: 17740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3230A>G
  hgvsp: ENSP00000383306.2:p.Thr1078Ala
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3295A>G
  hgvsp: ENSP00000215473.6:p.Thr1099Ala
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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hgvs: p.Thr1078Ala
num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 1057
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

Y-5369272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369272
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 14713
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3239G>A
  hgvsp: ENSP00000383306.2:p.Asp1081Asn
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3304G>A
  hgvsp: ENSP00000215473.6:p.Asp1102Asn
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Asp1081Asn
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7397
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

Y-5369275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369275
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13731
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3242G>A
  hgvsp: ENSP00000383306.2:p.Gly1082Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3307G>A
  hgvsp: ENSP00000215473.6:p.Gly1103Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1082Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 673
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS

Y-5369283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369283
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369283
    reference: chr 0
allele count: 9
allele frequency: 7.217900392974577e-4
allele num: 12469
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3250C>T
  hgvsp: ENST00000400457.2:c.3250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3315C>T
  hgvsp: ENST00000215473.6:c.3315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser1084Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 823
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

Y-5369314-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369314
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3328+18G>T
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3263+18G>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 543
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

Y-5369321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369321
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7923
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3328+25C>T
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3263+25C>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 347
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

Y-5369332-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369332
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369332
    reference: chr 0
allele count: 3
allele frequency: 3.970880211780278e-4
allele num: 7555
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3328+36G>T
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3263+36G>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 400
  num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

Y-5369339-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369339
    reference: chr 0
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    type: ExactPosition
    position: 25005369339
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7599
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3328+43T>G
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3263+43T>G
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 225
  num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

Y-5369340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005369340
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005369340
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3328+44G>A
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3263+44G>A
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
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  allele num: 463
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

Y-5449799-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005449799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005449799
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1969
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3264-17T>G
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3329-33509T>G
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 63
  num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

Y-5449868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005449868
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005449868
    reference: chr 0
allele count: 1
allele frequency: 1.536806516059628e-4
allele num: 6507
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3329-33440C>T
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+29C>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 561
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

Y-5483301-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005483301
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005483301
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3329-7A>G
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+33462A>G
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.3329-7A>G
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 593
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

Y-5491090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005491090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005491090
    reference: chr 0
allele count: 1
allele frequency: 2.676659528907923e-4
allele num: 3736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+41251G>A
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3338-41G>A
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

Y-5491093-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005491093
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005491093
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3628
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3338-38A>G
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+41254A>G
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
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  allele num: 2456
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

Y-5491122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005491122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005491122
    reference: chr 0
allele count: 3
allele frequency: 8.9632506722438e-4
allele num: 3347
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3338-9G>A
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+41283G>A
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 606
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
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site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

Y-5491139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005491139
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005491139
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3003
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+41300A>G
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3346A>G
  hgvsp: ENSP00000215473.6:p.Arg1116Gly
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1116Gly
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 333
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

Y-5491165-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005491165
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005491165
    reference: chr 0
allele count: 3
allele frequency: 1.509813789632612e-3
allele num: 1987
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+41326A>C
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3352+20A>C
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.642036124794745e-3
  allele num: 1218
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

Y-5491186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005491186
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005491186
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3287+41347C>T
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3352+41C>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 32
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

Y-5605293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605293
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605293
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 5575
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3353-20C>T
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3288-20C>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 296
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

Y-5605358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605358
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605358
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10935
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3398C>T
  hgvsp: ENSP00000215473.6:p.Thr1133Ile
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3333C>T
  hgvsp: ENSP00000383306.2:p.Thr1112Ile
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 408
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  variant carriers: 0
hgvs: p.Thr1112Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4830
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

Y-5605368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605368
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605368
    reference: chr 0
allele count: 1
allele frequency: 7.707129094412332e-5
allele num: 12975
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3343T>C
  hgvsp: ENST00000400457.2:c.3343T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3408T>C
  hgvsp: ENST00000215473.6:c.3408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
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  variant carriers: 0
hgvs: p.Cys1115Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 873
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

Y-5605390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605390
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605390
    reference: chr 0
allele count: 1
allele frequency: 4.05137138921525e-5
allele num: 24683
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3365G>A
  hgvsp: ENSP00000383306.2:p.Ala1123Thr
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3430G>A
  hgvsp: ENSP00000215473.6:p.Ala1144Thr
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 576
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  variant carriers: 0
hgvs: p.Ala1123Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1384
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

Y-5605403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605403
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605403
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 30874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3443C>T
  hgvsp: ENSP00000215473.6:p.Pro1148Leu
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3378C>T
  hgvsp: ENSP00000383306.2:p.Pro1127Leu
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro1127Leu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1699
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

Y-5605417-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605417
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605417
    reference: chr 0
allele count: 1
allele frequency: 3.028834504482675e-5
allele num: 33016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3392C>A
  hgvsp: ENSP00000383306.2:p.His1132Asn
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3457C>A
  hgvsp: ENSP00000215473.6:p.His1153Asn
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 417
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  variant carriers: 0
hgvs: p.His1132Asn
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2054
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

Y-5605442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605442
    reference: chr 0
allele count: 2
allele frequency: 5.973715651135006e-5
allele num: 33480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3482C>T
  hgvsp: ENSP00000215473.6:p.Ala1161Val
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3417C>T
  hgvsp: ENSP00000383306.2:p.Ala1140Val
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala1140Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1881
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

Y-5605447-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605447
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605447
    reference: chr 0
allele count: 6
allele frequency: 1.791205182553661e-4
allele num: 33497
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3487G>T
  hgvsp: ENSP00000215473.6:p.Ala1163Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3422G>T
  hgvsp: ENSP00000383306.2:p.Ala1142Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala1142Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18651
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

Y-5605463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605463
    reference: chr 0
allele count: 1
allele frequency: 2.98053709278412e-5
allele num: 33551
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3438C>T
  hgvsp: ENSP00000383306.2:p.Pro1147Leu
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3503C>T
  hgvsp: ENSP00000215473.6:p.Pro1168Leu
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro1147Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
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  allele num: 6386
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

Y-5605498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605498
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605498
    reference: chr 0
allele count: 1
allele frequency: 2.97645623121112e-5
allele num: 33597
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3538C>T
  hgvsp: ENSP00000215473.6:p.Pro1180Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3473C>T
  hgvsp: ENSP00000383306.2:p.Pro1159Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro1159Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
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  allele num: 6386
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

Y-5605514-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605514
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605514
    reference: chr 0
allele count: 1
allele frequency: 2.975570565655965e-5
allele num: 33607
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3489C>G
  hgvsp: ENSP00000383306.2:p.Thr1164Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3554C>G
  hgvsp: ENSP00000215473.6:p.Thr1185Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1164Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2083
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

Y-5605530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605530
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605530
    reference: chr 0
allele count: 1
allele frequency: 2.975216446996519e-5
allele num: 33611
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3570C>T
  hgvsp: ENST00000215473.6:c.3570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3505C>T
  hgvsp: ENST00000400457.2:c.3505C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His1169His
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2008
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

Y-5605535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605535
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605535
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 33610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3575C>T
  hgvsp: ENSP00000215473.6:p.Pro1192Leu
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3510C>T
  hgvsp: ENSP00000383306.2:p.Pro1171Leu
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro1171Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18718
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

Y-5605544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605544
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605544
    reference: chr 0
allele count: 6
allele frequency: 1.785236097473891e-4
allele num: 33609
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3519C>T
  hgvsp: ENSP00000383306.2:p.Thr1174Ile
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3584C>T
  hgvsp: ENSP00000215473.6:p.Thr1195Ile
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr1174Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6385
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

Y-5605555-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605555
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605555
    reference: chr 0
allele count: 1
allele frequency: 2.975659108492531e-5
allele num: 33606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3595G>T
  hgvsp: ENSP00000215473.6:p.Ala1199Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3530G>T
  hgvsp: ENSP00000383306.2:p.Ala1178Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1178Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 5.299417064122947e-4
  allele num: 1887
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

Y-5605577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605577
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605577
    reference: chr 0
allele count: 1
allele frequency: 2.975659108492531e-5
allele num: 33606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3617C>T
  hgvsp: ENSP00000215473.6:p.Pro1206Leu
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3552C>T
  hgvsp: ENSP00000383306.2:p.Pro1185Leu
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1185Leu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1887
  num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

Y-5605578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605578
    reference: chr 0
allele count: 4
allele frequency: 1.190157398315927e-4
allele num: 33609
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3553G>A
  hgvsp: ENST00000400457.2:c.3553G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3618G>A
  hgvsp: ENST00000215473.6:c.3618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 27
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 419
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 424
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genotype quality: GenotypeQuality
  all individuals: 1572
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
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  variant carriers: 0
hgvs: p.Pro1185Pro
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.566170712607674e-4
  allele num: 6385
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

Y-5605599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605599
    reference: chr 0
allele count: 1
allele frequency: 2.974862412613417e-5
allele num: 33615
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3639C>T
  hgvsp: ENST00000215473.6:c.3639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3574C>T
  hgvsp: ENST00000400457.2:c.3574C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His1192His
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2253
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

Y-5605612-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605612
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605612
    reference: chr 0
allele count: 1
allele frequency: 2.97495091330993e-5
allele num: 33614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3587C>G
  hgvsp: ENSP00000383306.2:p.Leu1197Val
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3652C>G
  hgvsp: ENSP00000215473.6:p.Leu1218Val
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 464
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu1197Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
  num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

Y-5605613-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605613
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605613
    reference: chr 0
allele count: 1
allele frequency: 2.974773917182294e-5
allele num: 33616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3653T>C
  hgvsp: ENSP00000215473.6:p.Leu1218Pro
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3588T>C
  hgvsp: ENSP00000383306.2:p.Leu1197Pro
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22381
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 28030
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genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 424
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu1197Pro
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

Y-5605617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605617
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605617
    reference: chr 0
allele count: 1
allele frequency: 2.974596942114343e-5
allele num: 33618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3592G>C
  hgvsp: ENST00000400457.2:c.3592G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3657G>C
  hgvsp: ENST00000215473.6:c.3657G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 802
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 217
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 329
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 185
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genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
hgvs: p.Val1198Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

Y-5605625-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605625
    reference: chr 0
allele count: 1
allele frequency: 2.974596942114343e-5
allele num: 33618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3600C>G
  hgvsp: ENSP00000383306.2:p.Thr1201Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3665C>G
  hgvsp: ENSP00000215473.6:p.Thr1222Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2961
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
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  variant carriers: 0
hgvs: p.Thr1201Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1888
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

Y-5605649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605649
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605649
    reference: chr 0
allele count: 7
allele frequency: 2.082403688829392e-4
allele num: 33615
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3624C>T
  hgvsp: ENSP00000383306.2:p.Ser1209Leu
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3689C>T
  hgvsp: ENSP00000215473.6:p.Ser1230Leu
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser1209Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2251
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

Y-5605654-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605654
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605654
    reference: chr 0
allele count: 1
allele frequency: 2.975039419272305e-5
allele num: 33613
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3694C>G
  hgvsp: ENSP00000215473.6:p.Gln1232Glu
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3629C>G
  hgvsp: ENSP00000383306.2:p.Gln1211Glu
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 446
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genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 8
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 462
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 424
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28018
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln1211Glu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

Y-5605727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605727
    reference: chr 0
allele count: 1
allele frequency: 2.973712382538361e-5
allele num: 33628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3767A>G
  hgvsp: ENSP00000215473.6:p.Gln1256Arg
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3702A>G
  hgvsp: ENSP00000383306.2:p.Gln1235Arg
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 532
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  variant carriers: 0
hgvs: p.Gln1235Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1888
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

Y-5605728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605728
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605728
    reference: chr 0
allele count: 1
allele frequency: 2.973535533749628e-5
allele num: 33630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3768G>A
  hgvsp: ENST00000215473.6:c.3768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3703G>A
  hgvsp: ENST00000400457.2:c.3703G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gln1235Gln
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 5.338743259836634e-5
  allele num: 18731
  num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

Y-5605732-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605732
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605732
    reference: chr 0
allele count: 6
allele frequency: 1.784121320249777e-4
allele num: 33630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3707A>G
  hgvsp: ENSP00000383306.2:p.Ile1237Val
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3772A>G
  hgvsp: ENSP00000215473.6:p.Ile1258Val
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 466
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  variant carriers: 0
hgvs: p.Ile1237Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2084
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

Y-5605736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605736
    reference: chr 0
allele count: 1
allele frequency: 2.973535533749628e-5
allele num: 33630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3776C>T
  hgvsp: ENSP00000215473.6:p.Ala1259Val
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3711C>T
  hgvsp: ENSP00000383306.2:p.Ala1238Val
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala1238Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6386
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

Y-5605745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605745
    reference: chr 0
allele count: 8
allele frequency: 2.378686964795433e-4
allele num: 33632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3720G>A
  hgvsp: ENSP00000383306.2:p.Arg1241His
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3785G>A
  hgvsp: ENSP00000215473.6:p.Arg1262His
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28179
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  variant carriers: 0
hgvs: p.Arg1241His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6386
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

Y-5605780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605780
    reference: chr 0
allele count: 5
allele frequency: 1.48672355862151e-4
allele num: 33631
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3755G>A
  hgvsp: ENSP00000383306.2:p.Gly1253Ser
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3820G>A
  hgvsp: ENSP00000215473.6:p.Gly1274Ser
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 534
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hgvs: p.Gly1253Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2011
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

Y-5605781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605781
    reference: chr 0
allele count: 1
allele frequency: 2.973358705994291e-5
allele num: 33632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3821G>T
  hgvsp: ENSP00000215473.6:p.Gly1274Val
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3756G>T
  hgvsp: ENSP00000383306.2:p.Gly1253Val
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly1253Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2254
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

Y-5605826-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605826
    reference: chr 0
allele count: 1
allele frequency: 2.97344711724302e-5
allele num: 33631
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3801T>G
  hgvsp: ENSP00000383306.2:p.Val1268Gly
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3866T>G
  hgvsp: ENSP00000215473.6:p.Val1289Gly
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 420
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val1268Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1888
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

Y-5605832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605832
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 33630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3807G>A
  hgvsp: ENSP00000383306.2:p.Gly1270Asp
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3872G>A
  hgvsp: ENSP00000215473.6:p.Gly1291Asp
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly1270Asp
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6385
  num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

Y-5605864-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605864
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605864
    reference: chr 0
allele count: 1
allele frequency: 2.973977695167286e-5
allele num: 33625
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3904G>A
  hgvsp: ENSP00000215473.6:p.Glu1302Lys
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3839G>A
  hgvsp: ENSP00000383306.2:p.Glu1281Lys
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 215
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  variant carriers: 0
hgvs: p.Glu1281Lys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2084
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

Y-5605883-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605883
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605883
    reference: chr 0
allele count: 2
allele frequency: 5.949016924953151e-5
allele num: 33619
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3923A>G
  hgvsp: ENSP00000215473.6:p.Asp1308Gly
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3858A>G
  hgvsp: ENSP00000383306.2:p.Asp1287Gly
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp1287Gly
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.566170712607674e-4
  allele num: 6385
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

Y-5605919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605919
    reference: chr 0
allele count: 1
allele frequency: 2.975393495789818e-5
allele num: 33609
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3959C>T
  hgvsp: ENSP00000215473.6:p.Ala1320Val
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3894C>T
  hgvsp: ENSP00000383306.2:p.Ala1299Val
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1299Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 275
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

Y-5605924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605924
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605924
    reference: chr 0
allele count: 410
allele frequency: 1.220056539205475e-2
allele num: 33605
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3964C>T
  hgvsp: ENSP00000215473.6:p.Arg1322Cys
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3899C>T
  hgvsp: ENSP00000383306.2:p.Arg1301Cys
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3299
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genotype depth: GenotypeDepth
  all individuals: 226
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  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 457
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  variant carriers: 10
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
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  variant carriers: 36
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 35
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  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 32
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genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 27760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 392
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 9.75e1
  variant carriers: 406
genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1301Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 11
  allele frequency: 5.832449628844115e-3
  allele num: 1886
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

Y-5605926-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605926
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605926
    reference: chr 0
allele count: 1
allele frequency: 2.975836209975003e-5
allele num: 33604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3901C>G
  hgvsp: ENST00000400457.2:c.3901C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.3966C>G
  hgvsp: ENST00000215473.6:c.3966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22064
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 520
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 412
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg1301Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2253
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

Y-5605971-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605971
    reference: chr 0
allele count: 1
allele frequency: 2.985074626865672e-5
allele num: 33500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3946A>G
  hgvsp: ENST00000400457.2:c.3946A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.4011A>G
  hgvsp: ENST00000215473.6:c.4011A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 25
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
hgvs: p.Thr1316Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6378
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

Y-5605972-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605972
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605972
    reference: chr 0
allele count: 1
allele frequency: 2.986501015410345e-5
allele num: 33484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3947C>T
  hgvsp: ENSP00000383306.2:p.His1317Tyr
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.4012C>T
  hgvsp: ENSP00000215473.6:p.His1338Tyr
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 799
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genotype quality: GenotypeQuality
  all individuals: 1641
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.His1317Tyr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
  num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

Y-5605977-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605977
    reference: chr 0
allele count: 1
allele frequency: 2.997601918465228e-5
allele num: 33360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3952C>G
  hgvsp: ENST00000400457.2:c.3952C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.4017C>G
  hgvsp: ENST00000215473.6:c.4017C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro1318Pro
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1865
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

Y-5605977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605977
    reference: chr 0
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    type: ExactPosition
    position: 25005605977
    reference: chr 0
allele count: 1
allele frequency: 2.997601918465228e-5
allele num: 33360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.3952C>T
  hgvsp: ENST00000400457.2:c.3952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000215473
  ensembl transcript: ENST00000215473
  gene symbol: PCDH11Y
  hgvsc: ENST00000215473.6:c.4017C>T
  hgvsp: ENST00000215473.6:c.4017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro1318Pro
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2236
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

Y-5605992-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005605992
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005605992
    reference: chr 0
allele count: 1
allele frequency: 3.076733739462187e-5
allele num: 32502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.*9T>C
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  allele num: 1923
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population: European (Finnish)
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  allele num: 2068
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population: Other
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  allele frequency: 0.0e0
  allele num: 269
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

Y-5606019-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005606019
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005606019
    reference: chr 0
allele count: 11
allele frequency: 3.809128055959554e-4
allele num: 28878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.*36G>T
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13269
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  num of homozygotes: 0
population: Latino
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population: South Asian
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  allele num: 5857
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

Y-5606024-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005606024
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005606024
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 27111
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.*41T>G
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 55
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5659
  num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 1440
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population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14604
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

Y-5606030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25005606030
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25005606030
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 25134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000099715
  ensembl protein: ENSP00000383306
  ensembl transcript: ENST00000400457
  gene symbol: PCDH11Y
  hgvsc: ENST00000400457.2:c.*47A>G
  variant of: http://identifiers.org/hgnc/15813
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
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  allele num: 5405
  num of homozygotes: 0
population: African
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  allele num: 1348
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population: East Asian
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  allele num: 1361
  num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

Y-6114265-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25006114265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25006114264
    reference: chr 0
allele count: 1
allele frequency: 2.393489707994256e-4
allele num: 4178
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168757
  ensembl protein: ENSP00000314077
  ensembl transcript: ENST00000320701
  gene symbol: TSPY2
  hgvsc: ENST00000320701.4:c.-44delC
  variant of: http://identifiers.org/hgnc/23924
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
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  allele count: 0
  allele frequency: 0.0e0
  allele num: 26
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population: European (Finnish)
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  allele num: 88
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population: East Asian
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  allele frequency: 0.0e0
  allele num: 244
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: GC
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

Y-6114284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25006114284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25006114284
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3377
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168757
  ensembl protein: ENSP00000314077
  ensembl transcript: ENST00000320701
  gene symbol: TSPY2
  hgvsc: ENST00000320701.4:c.-26T>C
  variant of: http://identifiers.org/hgnc/23924
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 206
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population: Other
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  allele num: 24
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population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 1782
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

Y-6114286-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25006114286
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25006114287
    reference: chr 0
allele count: 1
allele frequency: 2.977076510866329e-4
allele num: 3359
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168757
  ensembl protein: ENSP00000314077
  ensembl transcript: ENST00000320701
  gene symbol: TSPY2
  hgvsc: ENST00000320701.4:c.-19dupG
  variant of: http://identifiers.org/hgnc/23924
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10063
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 205
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.225490196078431e-3
  allele num: 816
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 51
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

Y-6114293-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25006114293
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25006114293
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168757
  ensembl protein: ENSP00000314077
  ensembl transcript: ENST00000320701
  gene symbol: TSPY2
  hgvsc: ENST00000320701.4:c.-17G>C
  variant of: http://identifiers.org/hgnc/23924
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15868
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10003
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 813
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 202
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1753
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

Y-6114301-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25006114301
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25006114301
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3496
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168757
  ensembl protein: ENSP00000314077
  ensembl transcript: ENST00000320701
  gene symbol: TSPY2
  hgvsc: ENST00000320701.4:c.-9G>C
  variant of: http://identifiers.org/hgnc/23924
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16926
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 855
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 208
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 217
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

Y-6114302-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25006114302
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 25006114302
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3544
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168757
  ensembl protein: ENSP00000314077
  ensembl transcript: ENST00000320701
  gene symbol: TSPY2
  hgvsc: ENST00000320701.4:c.-8C>A
  variant of: http://identifiers.org/hgnc/23924
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9525
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 220
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 279
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 57
  num of homozygotes: 0
reference allele: C

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2063
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.575795776867318e-4
allele num: 6346
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.87e1

VQSLOD
type: SiteQuality
SIO_000300: -4.582e0

QD
type: SiteQuality
SIO_000300: 2.383e1

DP
type: SiteQuality
SIO_000300: 9.48987e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2213
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.571585730001572e-4
allele num: 6363
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1873
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2011
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.743e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.37e0

DP
type: SiteQuality
SIO_000300: 9.66741e5

MQ
type: SiteQuality
SIO_000300: 3.298e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1881
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2075
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6375
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.361642807356174e-5
allele num: 18651
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.107e1

DP
type: SiteQuality
SIO_000300: 9.75114e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.856e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.791e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2233
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 9.930486593843098e-4
allele num: 2014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6383
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.755e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 9.79677e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.453e0

MQ
type: SiteQuality
SIO_000300: 3.316e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2079
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6383
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.214e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.391e0

VQSLOD
type: SiteQuality
SIO_000300: -3.876e0

DP
type: SiteQuality
SIO_000300: 9.79125e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 4.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 2.59e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18665
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2079
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 1884
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 6374
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MQ
type: SiteQuality
SIO_000300: 3.164e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 3.473e1

DP
type: SiteQuality
SIO_000300: 9.77173e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.359056806002143e-5
allele num: 18660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1883
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6371
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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DP
type: SiteQuality
SIO_000300: 9.76683e5

MQ
type: SiteQuality
SIO_000300: 2.98e1

QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

African
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allele count: 1
allele frequency: 5.353319057815846e-4
allele num: 1868
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2064
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Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
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European (Non-Finnish)
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allele count: 5
allele frequency: 2.699784017278618e-4
allele num: 18520
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South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 2.79e-2

MQ
type: SiteQuality
SIO_000300: 3.101e1

ClippingRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 1298
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1360
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1301
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.457515774915723e-4
allele num: 11569
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.992e0

MQ
type: SiteQuality
SIO_000300: 2.797e1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

South Asian
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allele frequency: 2.123593119558293e-4
allele num: 4709
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1299
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1235
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1205
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 179
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 2.999e1

DP
type: SiteQuality
SIO_000300: 5.52045e5

QD
type: SiteQuality
SIO_000300: 2.826e1

VQSLOD
type: SiteQuality
SIO_000300: -4.192e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.091226538629419e-4
allele num: 9164
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.291e1

VQSLOD
type: SiteQuality
SIO_000300: -3.683e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

DP
type: SiteQuality
SIO_000300: 4.67673e5

QD
type: SiteQuality
SIO_000300: 2.228e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3758
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 926
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 125
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 853
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.311e1

VQSLOD
type: SiteQuality
SIO_000300: -6.282e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.12542e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 117
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6818
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3618
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6045
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.736111111111111e-3
allele num: 576
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 745
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 2.290950744558992e-3
allele num: 3492
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DP
type: SiteQuality
SIO_000300: 3.74553e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 73
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3545
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 285
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 374
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

DP
type: SiteQuality
SIO_000300: 3.09064e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.2e1

VQSLOD
type: SiteQuality
SIO_000300: -6.375e0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 499
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3095
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3231
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.78e-2

DP
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MQ
type: SiteQuality
SIO_000300: 2.313e1

VQSLOD
type: SiteQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 465
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East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 71
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 231
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 9.711880867594691e-4
allele num: 3089
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

DP
type: SiteQuality
SIO_000300: 3.11109e5

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.556e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.582e0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2993
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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VQSLOD
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DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.48e-2

Latino
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allele frequency: 0.0e0
allele num: 227
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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DP
type: SiteQuality
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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VQSLOD
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 275
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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QD
type: SiteQuality
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European (Non-Finnish)
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allele frequency: 3.21853878339234e-4
allele num: 3107
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 373
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 466
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Other
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allele frequency: 0.0e0
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South Asian
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allele num: 1595
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

DP
type: SiteQuality
SIO_000300: 2.89354e5

East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 227
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 355
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 3.957261574990107e-4
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Other
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African
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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DP
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QD
type: SiteQuality
SIO_000300: 2.584e1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 55
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.113e0

DP
type: SiteQuality
SIO_000300: 1.23915e5

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

FS
type: SiteQuality
SIO_000300: 5.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.833e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

East Asian
type: Population
allele count: 3
allele frequency: 8.333333333333333e-2
allele num: 36
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2221
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.22e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

MQ
type: SiteQuality
SIO_000300: 3.111e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 2.208e1

DP
type: SiteQuality
SIO_000300: 1.14189e5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 541
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -5.089e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.01994e5

MQ
type: SiteQuality
SIO_000300: 2.251e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.359999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.227e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.985074626865672e-3
allele num: 335
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.462e0

MQ
type: SiteQuality
SIO_000300: 3.097e1

DP
type: SiteQuality
SIO_000300: 6.9265e4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 201
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 267
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.003e2

DP
type: SiteQuality
SIO_000300: 6.227e4

QD
type: SiteQuality
SIO_000300: 1.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

FS
type: SiteQuality
SIO_000300: 1.43675e2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

MQ
type: SiteQuality
SIO_000300: 2.806e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1487
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3149
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VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 3.0457e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.92e-2

MQ
type: SiteQuality
SIO_000300: 5.04e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 687
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 377
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3763
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.603e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

DP
type: SiteQuality
SIO_000300: 4.44711e5

VQSLOD
type: SiteQuality
SIO_000300: -2.961e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.027e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627869119322806e-4
allele num: 6143
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 556
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 791
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 117
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.772e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.76586e5

QD
type: SiteQuality
SIO_000300: 2.723e1

VQSLOD
type: SiteQuality
SIO_000300: -2.532e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1553
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.438262421898245e-5
allele num: 13444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1371
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1493
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.77178e5

MQ
type: SiteQuality
SIO_000300: 4.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.961e1

VQSLOD
type: SiteQuality
SIO_000300: -2.073e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 257
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2027
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1825
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6019
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17123
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.306e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.838e0

MQ
type: SiteQuality
SIO_000300: 4.425e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 7.95457e5

VQSLOD
type: SiteQuality
SIO_000300: -2.36e0

QD
type: SiteQuality
SIO_000300: 1.41e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1965
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2202
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Other
type: Population
allele count: 1
allele frequency: 3.703703703703704e-3
allele num: 270
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1847
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DP
type: SiteQuality
SIO_000300: 8.41303e5

MQ
type: SiteQuality
SIO_000300: 4.454e1

QD
type: SiteQuality
SIO_000300: 2.826e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2077
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18640
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East Asian
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allele count: 2
allele frequency: 1.006036217303823e-3
allele num: 1988
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2244
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MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.727000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.55225e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.131e1

QD
type: SiteQuality
SIO_000300: 2.569e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

Latino
type: Population
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allele frequency: 2.676181980374665e-3
allele num: 2242
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1991
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2076
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African
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 273
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QD
type: SiteQuality
SIO_000300: 3.134e1

MQ
type: SiteQuality
SIO_000300: 4.973e1

DP
type: SiteQuality
SIO_000300: 8.56353e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

FS
type: SiteQuality
SIO_000300: 6.307e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.073e0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2079
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1997
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18682
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1885
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 273
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.58767e5

MQ
type: SiteQuality
SIO_000300: 4.797e1

QD
type: SiteQuality
SIO_000300: 2.949e1

Latino
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allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2002
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1886
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2083
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.356e1

DP
type: SiteQuality
SIO_000300: 8.60978e5

QD
type: SiteQuality
SIO_000300: 3.387e1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1887
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2006
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.342165713980447e-5
allele num: 18719
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.686e0

DP
type: SiteQuality
SIO_000300: 8.61324e5

VQSLOD
type: SiteQuality
SIO_000300: -1.371e0

QD
type: SiteQuality
SIO_000300: 2.824e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.221e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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European (Non-Finnish)
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allele count: 1
allele frequency: 5.342165713980447e-5
allele num: 18719
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 1887
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2253
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.059e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 8.61358e5

QD
type: SiteQuality
SIO_000300: 2.999e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1887
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.313e0

FS
type: SiteQuality
SIO_000300: 3.333e0

MQ
type: SiteQuality
SIO_000300: 4.893e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.626e0

DP
type: SiteQuality
SIO_000300: 8.61374e5

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.909e0

QD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1887
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2253
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.205128205128205e-4
allele num: 18720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

QD
type: SiteQuality
SIO_000300: 3.116e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

DP
type: SiteQuality
SIO_000300: 8.61362e5

MQ
type: SiteQuality
SIO_000300: 4.754e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2005
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2253
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18718
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.252e1

MQ
type: SiteQuality
SIO_000300: 4.814e1

DP
type: SiteQuality
SIO_000300: 8.61185e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.571e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.44247001332741e-4
allele num: 2251
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18721
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.024e0

QD
type: SiteQuality
SIO_000300: 3.34e1

MQ
type: SiteQuality
SIO_000300: 4.507e1

DP
type: SiteQuality
SIO_000300: 8.61487e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.299417064122947e-4
allele num: 1887
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.068261937827155e-4
allele num: 18722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2005
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.629e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 3.126e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.599e0

DP
type: SiteQuality
SIO_000300: 8.61731e5

MQ
type: SiteQuality
SIO_000300: 4.206e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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East Asian
type: Population
allele count: 1
allele frequency: 4.987531172069825e-4
allele num: 2005
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1887
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18727
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.277e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.112e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.79e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 8.61971e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18728
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.438526409232135e-4
allele num: 2253
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2002
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.415e1

VQSLOD
type: SiteQuality
SIO_000300: -1.148e0

DP
type: SiteQuality
SIO_000300: 8.62806e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 3.323e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2005
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.339883590537726e-5
allele num: 18727
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2253
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.232e-1

MQ
type: SiteQuality
SIO_000300: 4.736e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.62698e5

QD
type: SiteQuality
SIO_000300: 3.054e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.339883590537726e-5
allele num: 18727
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2253
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2007
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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FS
type: SiteQuality
SIO_000300: 4.707e0

DP
type: SiteQuality
SIO_000300: 8.62627e5

MQ
type: SiteQuality
SIO_000300: 4.551e1

QD
type: SiteQuality
SIO_000300: 3.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.547e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.339883590537726e-5
allele num: 18727
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2007
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
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Other
type: Population
allele count: 0
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allele num: 274
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.75e-1

DP
type: SiteQuality
SIO_000300: 8.62771e5

QD
type: SiteQuality
SIO_000300: 3.336e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 4.494e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2005
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18728
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African
type: Population
allele count: 7
allele frequency: 3.709591944886063e-3
allele num: 1887
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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South Asian
type: Population
allele count: 0
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allele num: 6386
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -9.052e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.224e1

MQ
type: SiteQuality
SIO_000300: 4.389e1

DP
type: SiteQuality
SIO_000300: 8.63009e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.412e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18726
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2004
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South Asian
type: Population
allele count: 1
allele frequency: 1.565925461948011e-4
allele num: 6386
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2251
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DP
type: SiteQuality
SIO_000300: 8.62601e5

MQ
type: SiteQuality
SIO_000300: 4.536e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.27e1

VQSLOD
type: SiteQuality
SIO_000300: -1.288e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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South Asian
type: Population
allele count: 1
allele frequency: 1.565925461948011e-4
allele num: 6386
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18731
num of homozygotes: 0

Latino
type: Population
allele count: 0
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allele num: 2252
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.829e-1

DP
type: SiteQuality
SIO_000300: 8.70041e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQ
type: SiteQuality
SIO_000300: 4.679e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.139e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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Latino
type: Population
allele count: 0
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allele num: 2254
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African
type: Population
allele count: 0
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allele num: 1888
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QD
type: SiteQuality
SIO_000300: 1.548e1

FS
type: SiteQuality
SIO_000300: 4.78e0

VQSLOD
type: SiteQuality
SIO_000300: -2.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.934e0

MQRankSum
type: SiteQuality
SIO_000300: -8.4e-1

MQ
type: SiteQuality
SIO_000300: 4.472e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

DP
type: SiteQuality
SIO_000300: 8.7014e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

Other
type: Population
allele count: 0
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allele num: 275
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South Asian
type: Population
allele count: 4
allele frequency: 6.263701847792045e-4
allele num: 6386
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2253
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.067691650651292e-4
allele num: 18732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
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African
type: Population
allele count: 0
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allele num: 1888
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.255e-1

MQ
type: SiteQuality
SIO_000300: 4.689e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 3.259e1

DP
type: SiteQuality
SIO_000300: 8.70885e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1888
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.338173277104575e-5
allele num: 18733
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.472e-1

DP
type: SiteQuality
SIO_000300: 8.70768e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

QD
type: SiteQuality
SIO_000300: 3.121e1

MQ
type: SiteQuality
SIO_000300: 4.733e1

Latino
type: Population
allele count: 4
allele frequency: 1.774622892635315e-3
allele num: 2254
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.601451983131373e-4
allele num: 18733
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.970178926441351e-4
allele num: 2012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

MQ
type: SiteQuality
SIO_000300: 4.977e1

FS
type: SiteQuality
SIO_000300: 2.148e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

DP
type: SiteQuality
SIO_000300: 8.73222e5

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 3.305e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
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Other
type: Population
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.13526931084183e-4
allele num: 18733
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African
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allele count: 1
allele frequency: 5.296610169491525e-4
allele num: 1888
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Latino
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: -2.063e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 8.77667e5

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.202e1

QD
type: SiteQuality
SIO_000300: 3.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

African
type: Population
allele count: 1
allele frequency: 5.296610169491525e-4
allele num: 1888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18733
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.176e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.7705e5

VQSLOD
type: SiteQuality
SIO_000300: -6.321e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 3.303e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.338173277104575e-5
allele num: 18733
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.12e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.391e-1

DP
type: SiteQuality
SIO_000300: 8.74775e5

QD
type: SiteQuality
SIO_000300: 3.202e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.171e0

QD
type: SiteQuality
SIO_000300: 2.17e0

FS
type: SiteQuality
SIO_000300: 2.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 8.74744e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

MQ
type: SiteQuality
SIO_000300: 5.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.004e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1887
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6385
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2011
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.339313364301351e-5
allele num: 18729
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.67858e5

QD
type: SiteQuality
SIO_000300: 2.979e1

VQSLOD
type: SiteQuality
SIO_000300: -2.489e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQ
type: SiteQuality
SIO_000300: 3.886e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.299417064122947e-4
allele num: 1887
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.65715e5

QD
type: SiteQuality
SIO_000300: 3.349e1

MQ
type: SiteQuality
SIO_000300: 5.17e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.311e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.341880341880342e-5
allele num: 18720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.648e1

DP
type: SiteQuality
SIO_000300: 8.63458e5

MQ
type: SiteQuality
SIO_000300: 5.151e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.229e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Finnish)
type: Population
allele count: 5
allele frequency: 2.399232245681382e-3
allele num: 2084
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.636363636363636e-3
allele num: 275
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 386
allele frequency: 2.062296308169044e-2
allele num: 18717
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2005
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 2.218278615794144e-3
allele num: 2254
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.132832080200501e-4
allele num: 6384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.211e1

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 1.651e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 3.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.515e1

DP
type: SiteQuality
SIO_000300: 8.93815e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.342451116572284e-5
allele num: 18718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQ
type: SiteQuality
SIO_000300: 5.31e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.945e1

VQSLOD
type: SiteQuality
SIO_000300: -2.141e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

DP
type: SiteQuality
SIO_000300: 8.64693e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2245
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1989
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1875
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.359344016292406e-5
allele num: 18659
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.567e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.56008e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.872e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

QD
type: SiteQuality
SIO_000300: 3.121e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2243
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.567889620570712e-4
allele num: 6378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2079
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18647
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1875
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.327e1

DP
type: SiteQuality
SIO_000300: 8.5527e5

QD
type: SiteQuality
SIO_000300: 2.855e1

VQSLOD
type: SiteQuality
SIO_000300: -3.055e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.388802069299995e-5
allele num: 18557
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.312e1

VQSLOD
type: SiteQuality
SIO_000300: -4.534e-1

MQ
type: SiteQuality
SIO_000300: 5.309e1

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

FS
type: SiteQuality
SIO_000300: 4.53e0

DP
type: SiteQuality
SIO_000300: 8.50785e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.419e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1865
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.388802069299995e-5
allele num: 18557
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.312e1

FS
type: SiteQuality
SIO_000300: 4.53e0

MQ
type: SiteQuality
SIO_000300: 5.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.534e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.419e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

DP
type: SiteQuality
SIO_000300: 8.50785e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18015
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.598721023181455e-4
allele num: 6255
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.13792e5

MQ
type: SiteQuality
SIO_000300: 5.307e1

VQSLOD
type: SiteQuality
SIO_000300: -1.099e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.42e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 247
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1549
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1971
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15682
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 5.93485e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

QD
type: SiteQuality
SIO_000300: 3.111e1

VQSLOD
type: SiteQuality
SIO_000300: -1.15e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 243
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1739
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.72217e5

VQSLOD
type: SiteQuality
SIO_000300: -6.495e-1

QD
type: SiteQuality
SIO_000300: 2.851e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.761e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1829
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.62562e5

MQ
type: SiteQuality
SIO_000300: 5.395e1

QD
type: SiteQuality
SIO_000300: 2.513e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.611e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1077
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.164556962025316e-3
allele num: 316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 229
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

MQ
type: SiteQuality
SIO_000300: 3.048e1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.023e1

DP
type: SiteQuality
SIO_000300: 2.02427e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 825
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 207
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.639e0

MQ
type: SiteQuality
SIO_000300: 2.893e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.85702e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

QD
type: SiteQuality
SIO_000300: 1.794e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

QD
type: SiteQuality
SIO_000300: 2.305e1

DP
type: SiteQuality
SIO_000300: 1.85497e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.747e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 273
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 2.739e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.131e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.98e-2

DP
type: SiteQuality
SIO_000300: 1.89972e5

VQSLOD
type: SiteQuality
SIO_000300: -5.295e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.878e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.68e-2

QD
type: SiteQuality
SIO_000300: 2.049e1

MQ
type: SiteQuality
SIO_000300: 2.767e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.01685e5