http://identifiers.org/exac.variant/19-46811935-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811935
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811935
    reference: chr 19
allele count: 8
allele frequency: 1.301405517959396e-4
allele num: 61472
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.257A>C
  hgvsp: ENSP00000434653.2:p.Lys86Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*72A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.296A>C
  hgvsp: ENSP00000341877.2:p.Lys99Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435200
  ensembl transcript: ENST00000533145
  gene symbol: HIF3A
  hgvsc: ENST00000533145.1:c.440A>C
  hgvsp: ENSP00000435200.1:p.Lys147Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.495A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.495A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*193A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.257A>C
  hgvsp: ENSP00000244303.6:p.Lys86Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.341A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.311A>C
  hgvsp: ENSP00000407771.2:p.Lys104Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.464A>C
  hgvsp: ENSP00000366898.3:p.Lys155Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.458A>C
  hgvsp: ENSP00000300862.3:p.Lys153Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*193A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.257A>C
  hgvsp: ENSP00000471560.1:p.Lys86Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.495A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.406A>C
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18807
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys155Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

19-46811935-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811935
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811935
    reference: chr 19
allele count: 14
allele frequency: 2.277459656428943e-4
allele num: 61472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*193A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.311A>T
  hgvsp: ENSP00000407771.2:p.Lys104Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.495A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.464A>T
  hgvsp: ENSP00000366898.3:p.Lys155Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.257A>T
  hgvsp: ENSP00000471560.1:p.Lys86Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.341A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*193A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435200
  ensembl transcript: ENST00000533145
  gene symbol: HIF3A
  hgvsc: ENST00000533145.1:c.440A>T
  hgvsp: ENSP00000435200.1:p.Lys147Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.458A>T
  hgvsp: ENSP00000300862.3:p.Lys153Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*72A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.257A>T
  hgvsp: ENSP00000434653.2:p.Lys86Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.296A>T
  hgvsp: ENSP00000341877.2:p.Lys99Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.495A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.257A>T
  hgvsp: ENSP00000244303.6:p.Lys86Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.406A>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.495A>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27099
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18807
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys155Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

19-46811937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811937
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811937
    reference: chr 19
allele count: 1
allele frequency: 1.589269253997012e-5
allele num: 62922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*74G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*195G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.298G>A
  hgvsp: ENSP00000341877.2:p.Val100Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435200
  ensembl transcript: ENST00000533145
  gene symbol: HIF3A
  hgvsc: ENST00000533145.1:c.442G>A
  hgvsp: ENSP00000435200.1:p.Val148Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.313G>A
  hgvsp: ENSP00000407771.2:p.Val105Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.259G>A
  hgvsp: ENSP00000434653.2:p.Val87Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*195G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.466G>A
  hgvsp: ENSP00000366898.3:p.Val156Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.408G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.259G>A
  hgvsp: ENSP00000471560.1:p.Val87Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.259G>A
  hgvsp: ENSP00000244303.6:p.Val87Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.497G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.497G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.343G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.460G>A
  hgvsp: ENSP00000300862.3:p.Val154Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.497G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val156Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

19-46811947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811947
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811947
    reference: chr 19
allele count: 1
allele frequency: 1.391284990817519e-5
allele num: 71876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.476C>T
  hgvsp: ENSP00000366898.3:p.Pro159Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*84C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.308C>T
  hgvsp: ENSP00000341877.2:p.Pro103Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.323C>T
  hgvsp: ENSP00000407771.2:p.Pro108Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.507C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.269C>T
  hgvsp: ENSP00000244303.6:p.Pro90Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.470C>T
  hgvsp: ENSP00000300862.3:p.Pro157Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.507C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.269C>T
  hgvsp: ENSP00000434653.2:p.Pro90Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.269C>T
  hgvsp: ENSP00000471560.1:p.Pro90Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.353C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.418C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.507C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro159Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

19-46811950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811950
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811950
    reference: chr 19
allele count: 5
allele frequency: 6.741633632661866e-5
allele num: 74166
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.479C>T
  hgvsp: ENSP00000366898.3:p.Thr160Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.473C>T
  hgvsp: ENSP00000300862.3:p.Thr158Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.272C>T
  hgvsp: ENSP00000244303.6:p.Thr91Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.311C>T
  hgvsp: ENSP00000341877.2:p.Thr104Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.326C>T
  hgvsp: ENSP00000407771.2:p.Thr109Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.272C>T
  hgvsp: ENSP00000471560.1:p.Thr91Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.510C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.356C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.272C>T
  hgvsp: ENSP00000434653.2:p.Thr91Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.510C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.421C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.510C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21628
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23884
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr160Met
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-46811951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811951
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811951
    reference: chr 19
allele count: 12
allele frequency: 1.590162196544047e-4
allele num: 75464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.474G>A
  hgvsp: ENST00000300862.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.327G>A
  hgvsp: ENST00000420102.2:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.480G>A
  hgvsp: ENST00000377670.4:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.273G>A
  hgvsp: ENST00000600383.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.312G>A
  hgvsp: ENST00000339613.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.273G>A
  hgvsp: ENST00000472815.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.511G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.422G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.357G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.273G>A
  hgvsp: ENST00000244303.6:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.511G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.511G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5702
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr160Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-46811955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811955
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811955
    reference: chr 19
allele count: 3
allele frequency: 3.826042596607576e-5
allele num: 78410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.515C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.277C>T
  hgvsp: ENSP00000244303.6:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*213C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.478C>T
  hgvsp: ENSP00000300862.3:p.Arg160Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.426C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.515C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.277C>T
  hgvsp: ENSP00000434653.2:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.277C>T
  hgvsp: ENSP00000471560.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.331C>T
  hgvsp: ENSP00000407771.2:p.Arg111Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.361C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.316C>T
  hgvsp: ENSP00000341877.2:p.Arg106Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*213C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.484C>T
  hgvsp: ENSP00000366898.3:p.Arg162Trp
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.515C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25614
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg162Trp
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum

19-46811956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811956
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811956
    reference: chr 19
allele count: 1
allele frequency: 1.256849831582123e-5
allele num: 79564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.278G>A
  hgvsp: ENSP00000244303.6:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.278G>A
  hgvsp: ENSP00000434653.2:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.516G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.317G>A
  hgvsp: ENSP00000341877.2:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.479G>A
  hgvsp: ENSP00000300862.3:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.516G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.362G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.516G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.278G>A
  hgvsp: ENSP00000471560.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.485G>A
  hgvsp: ENSP00000366898.3:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.427G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.332G>A
  hgvsp: ENSP00000407771.2:p.Arg111Gln
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg162Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

19-46811959-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811959
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811959
    reference: chr 19
allele count: 6
allele frequency: 7.32493407559332e-5
allele num: 81912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.335G>C
  hgvsp: ENSP00000407771.2:p.Cys112Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.430G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.281G>C
  hgvsp: ENSP00000434653.2:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.281G>C
  hgvsp: ENSP00000471560.1:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.281G>C
  hgvsp: ENSP00000244303.6:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.482G>C
  hgvsp: ENSP00000300862.3:p.Cys161Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.519G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.488G>C
  hgvsp: ENSP00000366898.3:p.Cys163Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*96G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.519G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*217G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.365G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*217G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.320G>C
  hgvsp: ENSP00000341877.2:p.Cys107Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.519G>C
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26725
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys163Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

19-46811965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811965
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811965
    reference: chr 19
allele count: 1
allele frequency: 1.162196085723583e-5
allele num: 86044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.287C>T
  hgvsp: ENSP00000471560.1:p.Ser96Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.494C>T
  hgvsp: ENSP00000366898.3:p.Ser165Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.525C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.287C>T
  hgvsp: ENSP00000434653.2:p.Ser96Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.287C>T
  hgvsp: ENSP00000244303.6:p.Ser96Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.371C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.326C>T
  hgvsp: ENSP00000341877.2:p.Ser109Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.525C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.341C>T
  hgvsp: ENSP00000407771.2:p.Ser114Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.525C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.488C>T
  hgvsp: ENSP00000300862.3:p.Ser163Phe
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.436C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser165Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-46811970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811970
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811970
    reference: chr 19
allele count: 2
allele frequency: 2.27040526734022e-5
allele num: 88090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.493C>T
  hgvsp: ENSP00000300862.3:p.Arg165Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.530C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.376C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.292C>T
  hgvsp: ENSP00000471560.1:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*107C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.499C>T
  hgvsp: ENSP00000366898.3:p.Arg167Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.530C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.292C>T
  hgvsp: ENSP00000434653.2:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.331C>T
  hgvsp: ENSP00000341877.2:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.292C>T
  hgvsp: ENSP00000244303.6:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.441C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.530C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.346C>T
  hgvsp: ENSP00000407771.2:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg167Cys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-46811971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811971
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811971
    reference: chr 19
allele count: 2
allele frequency: 2.256979709752409e-5
allele num: 88614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*229G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.531G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.500G>A
  hgvsp: ENSP00000366898.3:p.Arg167His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*229G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.531G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.293G>A
  hgvsp: ENSP00000471560.1:p.Arg98His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.377G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.531G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.347G>A
  hgvsp: ENSP00000407771.2:p.Arg116His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.494G>A
  hgvsp: ENSP00000300862.3:p.Arg165His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.293G>A
  hgvsp: ENSP00000434653.2:p.Arg98His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.332G>A
  hgvsp: ENSP00000341877.2:p.Arg111His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.442G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.293G>A
  hgvsp: ENSP00000244303.6:p.Arg98His
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg167His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

19-46811979-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811979
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811979
    reference: chr 19
allele count: 1
allele frequency: 1.107885932064435e-5
allele num: 90262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*237A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.301A>G
  hgvsp: ENSP00000244303.6:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*116A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.385A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.301A>G
  hgvsp: ENSP00000471560.1:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.355A>G
  hgvsp: ENSP00000407771.2:p.Ser119Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.539A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.539A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*237A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.340A>G
  hgvsp: ENSP00000341877.2:p.Ser114Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.539A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.502A>G
  hgvsp: ENSP00000300862.3:p.Ser168Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.508A>G
  hgvsp: ENSP00000366898.3:p.Ser170Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.301A>G
  hgvsp: ENSP00000434653.2:p.Ser101Gly
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.450A>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser170Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-46811983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811983
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811983
    reference: chr 19
allele count: 16
allele frequency: 1.771165426850868e-4
allele num: 90336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.305C>T
  hgvsp: ENSP00000244303.6:p.Thr102Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.359C>T
  hgvsp: ENSP00000407771.2:p.Thr120Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.506C>T
  hgvsp: ENSP00000300862.3:p.Thr169Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.305C>T
  hgvsp: ENSP00000434653.2:p.Thr102Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.543C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.344C>T
  hgvsp: ENSP00000341877.2:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.543C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*241C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.305C>T
  hgvsp: ENSP00000471560.1:p.Thr102Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.389C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*241C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.454C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.512C>T
  hgvsp: ENSP00000366898.3:p.Thr171Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*120C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.543C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26356
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr171Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-46811984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811984
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811984
    reference: chr 19
allele count: 89298
allele frequency: 8.176124814591001e-1
allele num: 109218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.507A>G
  hgvsp: ENST00000300862.3:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*242A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.306A>G
  hgvsp: ENST00000600383.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.544A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.360A>G
  hgvsp: ENST00000420102.2:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.455A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.544A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.513A>G
  hgvsp: ENST00000377670.4:c.513A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.306A>G
  hgvsp: ENST00000472815.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.306A>G
  hgvsp: ENST00000244303.6:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.345A>G
  hgvsp: ENST00000339613.2:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*121A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*242A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.390A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.544A>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 11600
  bin: 1.75e1
  variant carriers: 11428
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.25e1
  variant carriers: 1911
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 854
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 1.25e1
  variant carriers: 8060
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.25e1
  variant carriers: 5228
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 2.75e1
  variant carriers: 8316
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 408
genotype quality: GenotypeQuality
hgvs: p.Thr171Thr
num of homozygotes: 36441
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

19-46811987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811987
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811987
    reference: chr 19
allele count: 1
allele frequency: 1.103630945811721e-5
allele num: 90610
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.516C>T
  hgvsp: ENST00000377670.4:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.309C>T
  hgvsp: ENST00000600383.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.547C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.309C>T
  hgvsp: ENST00000472815.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.309C>T
  hgvsp: ENST00000244303.6:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.363C>T
  hgvsp: ENST00000420102.2:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.547C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.348C>T
  hgvsp: ENST00000339613.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.547C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*124C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.510C>T
  hgvsp: ENST00000300862.3:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.393C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.458C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu172Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-46811988-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811988
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811988
    reference: chr 19
allele count: 8
allele frequency: 9.19667080516853e-5
allele num: 86988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.548A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.310A>C
  hgvsp: ENSP00000244303.6:p.Thr104Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.310A>C
  hgvsp: ENSP00000471560.1:p.Thr104Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*246A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.511A>C
  hgvsp: ENSP00000300862.3:p.Thr171Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.459A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.394A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.548A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.517A>C
  hgvsp: ENSP00000366898.3:p.Thr173Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.364A>C
  hgvsp: ENSP00000407771.2:p.Thr122Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.349A>C
  hgvsp: ENSP00000341877.2:p.Thr117Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*125A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.310A>C
  hgvsp: ENSP00000434653.2:p.Thr104Pro
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.548A>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*246A>C
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13467
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr173Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

19-46811989-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811989
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811989
    reference: chr 19
allele count: 4
allele frequency: 4.467077637809345e-5
allele num: 89544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*247C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.395C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.311C>G
  hgvsp: ENSP00000471560.1:p.Thr104Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.549C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.311C>G
  hgvsp: ENSP00000434653.2:p.Thr104Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.350C>G
  hgvsp: ENSP00000341877.2:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.460C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*247C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.311C>G
  hgvsp: ENSP00000244303.6:p.Thr104Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.518C>G
  hgvsp: ENSP00000366898.3:p.Thr173Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.512C>G
  hgvsp: ENSP00000300862.3:p.Thr171Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.365C>G
  hgvsp: ENSP00000407771.2:p.Thr122Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.549C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.549C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*126C>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13586
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr173Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

19-46811994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811994
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811994
    reference: chr 19
allele count: 32
allele frequency: 3.667285521098352e-4
allele num: 87258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.554C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*252C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.554C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.316C>T
  hgvsp: ENSP00000434653.2:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.517C>T
  hgvsp: ENSP00000300862.3:p.Arg173Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.316C>T
  hgvsp: ENSP00000244303.6:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.316C>T
  hgvsp: ENSP00000471560.1:p.Arg106Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.370C>T
  hgvsp: ENSP00000407771.2:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.523C>T
  hgvsp: ENSP00000366898.3:p.Arg175Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.554C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.355C>T
  hgvsp: ENSP00000341877.2:p.Arg119Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*131C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.465C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.400C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*252C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

19-46811995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811995
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811995
    reference: chr 19
allele count: 5
allele frequency: 5.742506029631331e-5
allele num: 87070
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.524G>A
  hgvsp: ENSP00000366898.3:p.Arg175His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.466G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.317G>A
  hgvsp: ENSP00000471560.1:p.Arg106His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*253G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.317G>A
  hgvsp: ENSP00000244303.6:p.Arg106His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.371G>A
  hgvsp: ENSP00000407771.2:p.Arg124His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.356G>A
  hgvsp: ENSP00000341877.2:p.Arg119His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*253G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.518G>A
  hgvsp: ENSP00000300862.3:p.Arg173His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.317G>A
  hgvsp: ENSP00000434653.2:p.Arg106His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.555G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.555G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.401G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*132G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.555G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11475
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

19-46811996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811996
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811996
    reference: chr 19
allele count: 3
allele frequency: 3.470213996529786e-5
allele num: 86450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*133C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.556C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.318C>G
  hgvsp: ENST00000244303.6:c.318C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.318C>G
  hgvsp: ENST00000600383.1:c.318C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.519C>G
  hgvsp: ENST00000300862.3:c.519C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.556C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.318C>G
  hgvsp: ENST00000472815.1:c.318C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.372C>G
  hgvsp: ENST00000420102.2:c.372C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.357C>G
  hgvsp: ENST00000339613.2:c.357C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*254C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*254C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.556C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.525C>G
  hgvsp: ENST00000377670.4:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.467C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.402C>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13789
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-46811997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46811997
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46811997
    reference: chr 19
allele count: 2
allele frequency: 2.320993385168852e-5
allele num: 86170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.319G>A
  hgvsp: ENSP00000244303.6:p.Gly107Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.373G>A
  hgvsp: ENSP00000407771.2:p.Gly125Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.557G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.468G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.319G>A
  hgvsp: ENSP00000434653.2:p.Gly107Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.526G>A
  hgvsp: ENSP00000366898.3:p.Gly176Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.520G>A
  hgvsp: ENSP00000300862.3:p.Gly174Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.403G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.319G>A
  hgvsp: ENSP00000471560.1:p.Gly107Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.358G>A
  hgvsp: ENSP00000341877.2:p.Gly120Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.557G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.557G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly176Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

19-46812000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812000
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812000
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 84856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.560C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.560C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.406C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*258C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.471C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.322C>T
  hgvsp: ENSP00000244303.6:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.560C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.376C>T
  hgvsp: ENSP00000407771.2:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.322C>T
  hgvsp: ENSP00000434653.2:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.322C>T
  hgvsp: ENSP00000471560.1:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.529C>T
  hgvsp: ENSP00000366898.3:p.Arg177Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*258C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.523C>T
  hgvsp: ENSP00000300862.3:p.Arg175Cys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.361C>T
  hgvsp: ENSP00000341877.2:p.Arg121Cys
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15881
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12941
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg177Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

19-46812001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812001
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812001
    reference: chr 19
allele count: 7
allele frequency: 8.320654241156333e-5
allele num: 84128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.323G>A
  hgvsp: ENSP00000434653.2:p.Arg108His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.407G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.561G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.362G>A
  hgvsp: ENSP00000341877.2:p.Arg121His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.561G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.530G>A
  hgvsp: ENSP00000366898.3:p.Arg177His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.323G>A
  hgvsp: ENSP00000471560.1:p.Arg108His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.472G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.377G>A
  hgvsp: ENSP00000407771.2:p.Arg126His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.561G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.524G>A
  hgvsp: ENSP00000300862.3:p.Arg175His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.323G>A
  hgvsp: ENSP00000244303.6:p.Arg108His
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*259G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*259G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16047
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg177His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

19-46812003-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812003
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812003
    reference: chr 19
allele count: 3
allele frequency: 3.601959465949476e-5
allele num: 83288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.325A>G
  hgvsp: ENSP00000434653.2:p.Thr109Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.532A>G
  hgvsp: ENSP00000366898.3:p.Thr178Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.325A>G
  hgvsp: ENSP00000244303.6:p.Thr109Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.563A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.364A>G
  hgvsp: ENSP00000341877.2:p.Thr122Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.526A>G
  hgvsp: ENSP00000300862.3:p.Thr176Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.325A>G
  hgvsp: ENSP00000471560.1:p.Thr109Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*261A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*140A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.563A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*261A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.379A>G
  hgvsp: ENSP00000407771.2:p.Thr127Ala
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.409A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.474A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.563A>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr178Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-46812004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812004
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812004
    reference: chr 19
allele count: 8
allele frequency: 9.685230024213075e-5
allele num: 82600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.326C>T
  hgvsp: ENSP00000434653.2:p.Thr109Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.326C>T
  hgvsp: ENSP00000244303.6:p.Thr109Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.475C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.533C>T
  hgvsp: ENSP00000366898.3:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.564C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.564C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.326C>T
  hgvsp: ENSP00000471560.1:p.Thr109Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.527C>T
  hgvsp: ENSP00000300862.3:p.Thr176Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.564C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.365C>T
  hgvsp: ENSP00000341877.2:p.Thr122Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*141C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.380C>T
  hgvsp: ENSP00000407771.2:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*262C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.410C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*262C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr178Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-46812008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812008
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812008
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 80830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.330C>T
  hgvsp: ENST00000244303.6:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.568C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.330C>T
  hgvsp: ENST00000472815.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.568C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.369C>T
  hgvsp: ENST00000339613.2:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.479C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.537C>T
  hgvsp: ENST00000377670.4:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.414C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.330C>T
  hgvsp: ENST00000600383.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.384C>T
  hgvsp: ENST00000420102.2:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.531C>T
  hgvsp: ENST00000300862.3:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*145C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.568C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu179Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

19-46812019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812019
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812019
    reference: chr 19
allele count: 1
allele frequency: 1.362212232665849e-5
allele num: 73410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.490C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.380C>T
  hgvsp: ENSP00000341877.2:p.Ala127Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.395C>T
  hgvsp: ENSP00000407771.2:p.Ala132Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.341C>T
  hgvsp: ENSP00000471560.1:p.Ala114Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.579C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.425C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*156C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.548C>T
  hgvsp: ENSP00000366898.3:p.Ala183Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*277C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*277C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.341C>T
  hgvsp: ENSP00000434653.2:p.Ala114Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.579C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.579C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.341C>T
  hgvsp: ENSP00000244303.6:p.Ala114Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.542C>T
  hgvsp: ENSP00000300862.3:p.Ala181Val
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17465
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala183Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

19-46812020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812020
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812020
    reference: chr 19
allele count: 8
allele frequency: 1.101260943780629e-4
allele num: 72644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.342G>A
  hgvsp: ENST00000600383.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.543G>A
  hgvsp: ENST00000300862.3:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.580G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.580G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.491G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.342G>A
  hgvsp: ENST00000244303.6:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*157G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.426G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.381G>A
  hgvsp: ENST00000339613.2:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.396G>A
  hgvsp: ENST00000420102.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.342G>A
  hgvsp: ENST00000472815.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000469031
  ensembl transcript: ENST00000600879
  gene symbol: HIF3A
  hgvsc: ENST00000600879.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.580G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.549G>A
  hgvsp: ENST00000377670.4:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20223
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17758
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala183Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

19-46812036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812036
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812036
    reference: chr 19
allele count: 10
allele frequency: 1.796041524480046e-4
allele num: 55678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+4C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19438
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.561+4C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-46812037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812037
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812037
    reference: chr 19
allele count: 4
allele frequency: 7.446570854121677e-5
allele num: 53716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+5G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+5G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.561+5G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-46812044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812044
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812044
    reference: chr 19
allele count: 2
allele frequency: 4.160599126274184e-5
allele num: 48070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+12C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+12C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-46812045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812045
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812045
    reference: chr 19
allele count: 392
allele frequency: 8.330499829989799e-3
allele num: 47056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+13G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+13G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17577
  bin: 1.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 11577
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24346
  bin: 7.5e0
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 2
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

19-46812059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812059
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812059
    reference: chr 19
allele count: 3
allele frequency: 9.281603861147207e-5
allele num: 32322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+27C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+27C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13240
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-46812060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812060
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812060
    reference: chr 19
allele count: 4
allele frequency: 1.473947969636672e-4
allele num: 27138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+28G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+28G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-46812065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812065
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812065
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 25416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+33C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+33C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23435
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

19-46812066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812066
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812066
    reference: chr 19
allele count: 3
allele frequency: 1.328374070138151e-4
allele num: 22584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+34G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+34G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23910
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

19-46812076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812076
    reference: chr 19
allele count: 1
allele frequency: 5.530973451327434e-5
allele num: 18080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.555+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.354+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*290+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.354+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.592+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.561+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.438+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.354+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.592+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.393+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.592+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.503+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.408+44G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*169+44G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-46812359-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812359
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812359
    reference: chr 19
allele count: 1
allele frequency: 9.552375675830579e-6
allele num: 104686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-49T>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-49T>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

19-46812369-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812369
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812368
    reference: chr 19
allele count: 1157
allele frequency: 1.088408496547572e-2
allele num: 106302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-38delG
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-38delG
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 1.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19480
  bin: 2.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 14420
  bin: 1.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
num of homozygotes: 20
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: AG
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-46812372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812372
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812372
    reference: chr 19
allele count: 6
allele frequency: 5.624929688378895e-5
allele num: 106668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-36G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-36G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21383
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-46812378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812378
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812378
    reference: chr 19
allele count: 1
allele frequency: 9.276093651441505e-6
allele num: 107804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-30A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-30A>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-46812383-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812383
    reference: chr 19
allele count: 1
allele frequency: 9.175995595522114e-6
allele num: 108980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-25C>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-25C>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-46812384-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812384
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812384
    reference: chr 19
allele count: 15
allele frequency: 1.372570550126276e-4
allele num: 109284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-24T>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-24T>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29408
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

19-46812386-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812386
    reference: chr 19
allele count: 1
allele frequency: 9.113278046113186e-6
allele num: 109730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-22G>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-22G>C
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-46812389-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812389
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812389
    reference: chr 19
allele count: 13
allele frequency: 1.174960684007881e-4
allele num: 110642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-19C>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-19C>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

19-46812393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812393
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812393
    reference: chr 19
allele count: 6
allele frequency: 5.35503909178537e-5
allele num: 112044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-15C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-15C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12462
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

19-46812399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812399
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812399
    reference: chr 19
allele count: 3
allele frequency: 2.622836160167862e-5
allele num: 114380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-9G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-9G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

19-46812400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812400
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812400
    reference: chr 19
allele count: 1
allele frequency: 8.729964730942487e-6
allele num: 114548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-8G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-8G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.562-8G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

19-46812403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812403
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812403
    reference: chr 19
allele count: 1
allele frequency: 8.637965586345104e-6
allele num: 115768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-5C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-5C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.562-5C>T
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-46812404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812404
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812404
    reference: chr 19
allele count: 16
allele frequency: 1.379096347118551e-4
allele num: 116018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504-4C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355-4C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.562-4C>T
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-46812408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812408
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812408
    reference: chr 19
allele count: 1
allele frequency: 8.540147232138282e-6
allele num: 117094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556G>A
  hgvsp: ENSP00000300862.3:p.Val186Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394G>A
  hgvsp: ENSP00000341877.2:p.Val132Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562G>A
  hgvsp: ENSP00000366898.3:p.Val188Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355G>A
  hgvsp: ENSP00000471560.1:p.Val119Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409G>A
  hgvsp: ENSP00000407771.2:p.Val137Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355G>A
  hgvsp: ENSP00000434653.2:p.Val119Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355G>A
  hgvsp: ENSP00000244303.6:p.Val119Met
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val188Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-46812408-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812408
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812408
    reference: chr 19
allele count: 1
allele frequency: 8.540147232138282e-6
allele num: 117094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.355G>T
  hgvsp: ENSP00000471560.1:p.Val119Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.593G>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.593G>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.409G>T
  hgvsp: ENSP00000407771.2:p.Val137Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.556G>T
  hgvsp: ENSP00000300862.3:p.Val186Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*170G>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.562G>T
  hgvsp: ENSP00000366898.3:p.Val188Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.355G>T
  hgvsp: ENSP00000434653.2:p.Val119Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.394G>T
  hgvsp: ENSP00000341877.2:p.Val132Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.355G>T
  hgvsp: ENSP00000244303.6:p.Val119Leu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.593G>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.504G>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.439G>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*291G>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val188Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-46812427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812427
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812427
    reference: chr 19
allele count: 1
allele frequency: 8.360784576024614e-6
allele num: 119606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.612A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.523A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*189A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.581A>G
  hgvsp: ENSP00000366898.3:p.His194Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.575A>G
  hgvsp: ENSP00000300862.3:p.His192Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.374A>G
  hgvsp: ENSP00000471560.1:p.His125Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.428A>G
  hgvsp: ENSP00000407771.2:p.His143Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.374A>G
  hgvsp: ENSP00000434653.2:p.His125Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.413A>G
  hgvsp: ENSP00000341877.2:p.His138Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.458A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.374A>G
  hgvsp: ENSP00000244303.6:p.His125Arg
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.612A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.612A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*310A>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His194Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-46812430-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812430
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812430
    reference: chr 19
allele count: 2
allele frequency: 1.669839361453428e-5
allele num: 119772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.431T>C
  hgvsp: ENSP00000407771.2:p.Met144Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.377T>C
  hgvsp: ENSP00000434653.2:p.Met126Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.584T>C
  hgvsp: ENSP00000366898.3:p.Met195Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.615T>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.377T>C
  hgvsp: ENSP00000471560.1:p.Met126Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.377T>C
  hgvsp: ENSP00000244303.6:p.Met126Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.615T>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*313T>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.461T>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*192T>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.615T>C
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.416T>C
  hgvsp: ENSP00000341877.2:p.Met139Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.578T>C
  hgvsp: ENSP00000300862.3:p.Met193Thr
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.526T>C
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met195Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

19-46812433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812433
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812433
    reference: chr 19
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.380G>A
  hgvsp: ENSP00000434653.2:p.Arg127Lys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.419G>A
  hgvsp: ENSP00000341877.2:p.Arg140Lys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.380G>A
  hgvsp: ENSP00000244303.6:p.Arg127Lys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.581G>A
  hgvsp: ENSP00000300862.3:p.Arg194Lys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.529G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.434G>A
  hgvsp: ENSP00000407771.2:p.Arg145Lys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.618G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.618G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.380G>A
  hgvsp: ENSP00000471560.1:p.Arg127Lys
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*316G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*195G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.618G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.464G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.587G>A
  hgvsp: ENSP00000366898.3:p.Arg196Lys
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg196Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-46812440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812440
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812440
    reference: chr 19
allele count: 8
allele frequency: 6.655241834850174e-5
allele num: 120206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.625C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.387C>T
  hgvsp: ENST00000244303.6:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.471C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*202C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.536C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.387C>T
  hgvsp: ENST00000472815.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.426C>T
  hgvsp: ENST00000339613.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.594C>T
  hgvsp: ENST00000377670.4:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.387C>T
  hgvsp: ENST00000600383.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*323C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.588C>T
  hgvsp: ENST00000300862.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.441C>T
  hgvsp: ENST00000420102.2:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.625C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.625C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr198Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-46812451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812451
    reference: chr 19
allele count: 9489
allele frequency: 7.875734537365957e-2
allele num: 120484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*213C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.437C>T
  hgvsp: ENSP00000341877.2:p.Ala146Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.452C>T
  hgvsp: ENSP00000407771.2:p.Ala151Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.398C>T
  hgvsp: ENSP00000471560.1:p.Ala133Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.636C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.482C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.398C>T
  hgvsp: ENSP00000434653.2:p.Ala133Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.398C>T
  hgvsp: ENSP00000244303.6:p.Ala133Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.636C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*334C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.636C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.599C>T
  hgvsp: ENSP00000300862.3:p.Ala200Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.605C>T
  hgvsp: ENSP00000366898.3:p.Ala202Val
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.547C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 769
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 33548
  bin: 2.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 860
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 698
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 128
genotype quality: GenotypeQuality
hgvs: p.Ala202Val
num of homozygotes: 455
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

19-46812452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812452
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812452
    reference: chr 19
allele count: 5
allele frequency: 4.152410058798127e-5
allele num: 120412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.399G>A
  hgvsp: ENST00000472815.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*335G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.637G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.453G>A
  hgvsp: ENST00000420102.2:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.438G>A
  hgvsp: ENST00000339613.2:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.399G>A
  hgvsp: ENST00000600383.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.637G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.548G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.606G>A
  hgvsp: ENST00000377670.4:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.600G>A
  hgvsp: ENST00000300862.3:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.637G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.399G>A
  hgvsp: ENST00000244303.6:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.483G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala202Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-46812453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812453
    reference: chr 19
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*215C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.638C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.638C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000529205
  gene symbol: HIF3A
  hgvsc: ENST00000529205.1:n.549C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.400C>T
  hgvsp: ENSP00000471560.1:p.Gln134Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.439C>T
  hgvsp: ENSP00000341877.2:p.Gln147Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.400C>T
  hgvsp: ENSP00000244303.6:p.Gln134Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.638C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.400C>T
  hgvsp: ENSP00000434653.2:p.Gln134Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.454C>T
  hgvsp: ENSP00000407771.2:p.Gln152Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.607C>T
  hgvsp: ENSP00000366898.3:p.Gln203Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.601C>T
  hgvsp: ENSP00000300862.3:p.Gln201Ter
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.484C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*336C>T
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln203Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-46812462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812462
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812462
    reference: chr 19
allele count: 2
allele frequency: 1.662648599218555e-5
allele num: 120290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.448C>T
  hgvsp: ENSP00000341877.2:p.Pro150Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.409C>T
  hgvsp: ENSP00000434653.2:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.647C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*345C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.463C>T
  hgvsp: ENSP00000407771.2:p.Pro155Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.616C>T
  hgvsp: ENSP00000366898.3:p.Pro206Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.647C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.647C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.610C>T
  hgvsp: ENSP00000300862.3:p.Pro204Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.493C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.409C>T
  hgvsp: ENSP00000244303.6:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*224C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.409C>T
  hgvsp: ENSP00000471560.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro206Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

19-46812464-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812464
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812464
    reference: chr 19
allele count: 1
allele frequency: 8.315040244794785e-6
allele num: 120264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.618A>G
  hgvsp: ENST00000377670.4:c.618A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.495A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.411A>G
  hgvsp: ENST00000244303.6:c.411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.649A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.450A>G
  hgvsp: ENST00000339613.2:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.465A>G
  hgvsp: ENST00000420102.2:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.411A>G
  hgvsp: ENST00000472815.1:c.411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.612A>G
  hgvsp: ENST00000300862.3:c.612A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.649A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*347A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.411A>G
  hgvsp: ENST00000600383.1:c.411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.649A>G
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*226A>G
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro206Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-46812469-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812469
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812469
    reference: chr 19
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.623G>A
  hgvsp: ENSP00000366898.3:p.Gly208Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*352G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.500G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.455G>A
  hgvsp: ENSP00000341877.2:p.Gly152Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.416G>A
  hgvsp: ENSP00000434653.2:p.Gly139Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*231G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.470G>A
  hgvsp: ENSP00000407771.2:p.Gly157Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.654G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.617G>A
  hgvsp: ENSP00000300862.3:p.Gly206Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.416G>A
  hgvsp: ENSP00000471560.1:p.Gly139Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.416G>A
  hgvsp: ENSP00000244303.6:p.Gly139Glu
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.654G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.654G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly208Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

19-46812470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812470
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812470
    reference: chr 19
allele count: 1
allele frequency: 8.327642777435419e-6
allele num: 120082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.618G>A
  hgvsp: ENST00000300862.3:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.471G>A
  hgvsp: ENST00000420102.2:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.417G>A
  hgvsp: ENST00000472815.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.501G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.417G>A
  hgvsp: ENST00000244303.6:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.624G>A
  hgvsp: ENST00000377670.4:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.456G>A
  hgvsp: ENST00000339613.2:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.655G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.417G>A
  hgvsp: ENST00000600383.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.655G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*353G>A
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.655G>A
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly208Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-46812486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46812486
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 46812486
    reference: chr 19
allele count: 3
allele frequency: 2.517581108071365e-5
allele num: 119162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000291300
  gene symbol: HIF3A
  hgvsc: ENST00000291300.4:n.671C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000407771
  ensembl transcript: ENST00000420102
  gene symbol: HIF3A
  hgvsc: ENST00000420102.2:c.487C>T
  hgvsp: ENSP00000407771.2:p.Pro163Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434653
  ensembl transcript: ENST00000472815
  gene symbol: HIF3A
  hgvsc: ENST00000472815.1:c.433C>T
  hgvsp: ENSP00000434653.2:p.Pro145Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000435532
  ensembl transcript: ENST00000528563
  gene symbol: HIF3A
  hgvsc: ENST00000528563.1:c.*369C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000434700
  ensembl transcript: ENST00000531043
  gene symbol: HIF3A
  hgvsc: ENST00000531043.1:c.9C>T
  hgvsp: ENSP00000434700.1:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000244302
  gene symbol: HIF3A
  hgvsc: ENST00000244302.4:n.671C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000244303
  ensembl transcript: ENST00000244303
  gene symbol: HIF3A
  hgvsc: ENST00000244303.6:c.433C>T
  hgvsp: ENSP00000244303.6:p.Pro145Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000525854
  gene symbol: HIF3A
  hgvsc: ENST00000525854.1:n.517C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000432809
  ensembl transcript: ENST00000533789
  gene symbol: HIF3A
  hgvsc: ENST00000533789.1:c.*248C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000471560
  ensembl transcript: ENST00000600383
  gene symbol: HIF3A
  hgvsc: ENST00000600383.1:c.433C>T
  hgvsp: ENSP00000471560.1:p.Pro145Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000341877
  ensembl transcript: ENST00000339613
  gene symbol: HIF3A
  hgvsc: ENST00000339613.2:c.472C>T
  hgvsp: ENSP00000341877.2:p.Pro158Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000124440
  ensembl transcript: ENST00000475432
  gene symbol: HIF3A
  hgvsc: ENST00000475432.2:n.671C>T
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000300862
  ensembl transcript: ENST00000300862
  gene symbol: HIF3A
  hgvsc: ENST00000300862.3:c.634C>T
  hgvsp: ENSP00000300862.3:p.Pro212Ser
  variant of: http://identifiers.org/hgnc/15825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124440
  ensembl protein: ENSP00000366898
  ensembl transcript: ENST00000377670
  gene symbol: HIF3A
  hgvsc: ENST00000377670.4:c.640C>T
  hgvsp: ENSP00000366898.3:p.Pro214Ser
  variant of: http://identifiers.org/hgnc/15825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33780
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro214Ser
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 2113
bin: 1.75e1
variant carriers: 3

GenotypeDepth
all individuals: 717
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2648
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27099
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 6409
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 27702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2176
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.6604400166044e-3
allele num: 4818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 8.30806e5

QD
type: SiteQuality
SIO_000300: 1.002e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2525
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2113
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 62
bin: 4.25e1
variant carriers: 4

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 717
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2648
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27702
bin: 2.25e1
variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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South Asian
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African
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East Asian
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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QD
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MQ
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DP
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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African
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European (Finnish)
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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QD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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DP
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2668
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.272520679938188e-5
allele num: 44004
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ReadPosRankSum
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BaseQRankSum
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FS
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SIO_000300: 8.72e-1

QD
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SIO_000300: 8.43e0

InbreedingCoeff
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SIO_000300: -4.7e-3

MQRankSum
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SIO_000300: -5.02e-1

VQSLOD
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SIO_000300: -7.019e-1

MQ
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SIO_000300: 5.928e1

DP
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SIO_000300: 9.89669e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12406
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 8.754012255617158e-4
allele num: 6854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
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SIO_000300: -9.9e-2

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
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SIO_000300: -2.11e-1

DP
type: SiteQuality
SIO_000300: 1.008829e6

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 3.456e0

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094767271356152e-5
allele num: 47738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 1.046652e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.021e1

FS
type: SiteQuality
SIO_000300: 1.075e0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
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SIO_000300: -2.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.045742809214026e-5
allele num: 48882
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.671064743786438e-5
allele num: 13036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.065505e6

QD
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BaseQRankSum
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SIO_000300: -1.411e0

VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49172
num of homozygotes: 0

African
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allele frequency: 2.725538293813028e-4
allele num: 7338
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 614
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 7.530120481927712e-5
allele num: 13280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 50090
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.09e0

MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.197843881014174e-4
allele num: 50090
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13326
num of homozygotes: 0

African
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allele count: 8
allele frequency: 1.075557945684324e-3
allele num: 7438
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.34796900680911e-4
allele num: 8518
num of homozygotes: 0

DP
type: SiteQuality
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QD
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SIO_000300: 1.264e1

VQSLOD
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SIO_000300: 1.95e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
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SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 4.051e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeDepth
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variant carriers: 3175

GenotypeDepth
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variant carriers: 443

GenotypeDepth
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variant carriers: 11220

GenotypeDepth
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GenotypeDepth
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variant carriers: 669

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1265

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1939

GenotypeQuality
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GenotypeQuality
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variant carriers: 477

GenotypeQuality
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GenotypeQuality
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variant carriers: 3167

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1075

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1741

GenotypeQuality
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variant carriers: 3574

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3010

GenotypeQuality
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variant carriers: 1009

GenotypeQuality
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variant carriers: 2124

East Asian
type: Population
allele count: 6108
allele frequency: 7.598905200298581e-1
allele num: 8038
num of homozygotes: 2306

African
type: Population
allele count: 6246
allele frequency: 6.974095578383207e-1
allele num: 8956
num of homozygotes: 2157

South Asian
type: Population
allele count: 12832
allele frequency: 8.213005632360471e-1
allele num: 15624
num of homozygotes: 5274

Latino
type: Population
allele count: 8207
allele frequency: 7.762958758986001e-1
allele num: 10572
num of homozygotes: 3159

Other
type: Population
allele count: 612
allele frequency: 8.031496062992126e-1
allele num: 762
num of homozygotes: 240

European (Finnish)
type: Population
allele count: 3769
allele frequency: 7.931397306397306e-1
allele num: 4752
num of homozygotes: 1468

European (Non-Finnish)
type: Population
allele count: 51524
allele frequency: 8.514393363519186e-1
allele num: 60514
num of homozygotes: 21837

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

InbreedingCoeff
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SIO_000300: 5.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

QD
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SIO_000300: 2.443e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.446868e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1484
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.000800320128051e-5
allele num: 49980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13422
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.769e-1

FS
type: SiteQuality
SIO_000300: 4.875e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 1.068977e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

QD
type: SiteQuality
SIO_000300: 6.09e0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 698
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GenotypeQuality
all individuals: 78
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variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 2.827254735651682e-4
allele num: 7074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.544502617801048e-4
allele num: 3056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.350730688935282e-5
allele num: 47900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

DP
type: SiteQuality
SIO_000300: 1.060197e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

FS
type: SiteQuality
SIO_000300: 3.57283e2

QD
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.854e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.8e2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.00390507659958e-4
allele num: 13316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49422
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.72e0

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.282e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 1.060302e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1221
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GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 32

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 2.131222408281321e-3
allele num: 13138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.159906818087275e-5
allele num: 48078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
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Other
type: Population
allele count: 1
allele frequency: 1.633986928104575e-3
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

FS
type: SiteQuality
SIO_000300: 3.366e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.032361e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7278
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

East Asian
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allele frequency: 1.486325802615933e-4
allele num: 6728
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.289726759273393e-4
allele num: 13102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
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SIO_000300: -5.3e-3

ClippingRankSum
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QD
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BaseQRankSum
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MQ
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

ReadPosRankSum
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SIO_000300: -3.35e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.202210362650754e-5
allele num: 47594
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.243471773190749e-4
allele num: 8042
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VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
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SIO_000300: -1.59e-1

QD
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FS
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SIO_000300: 4.588e0

BaseQRankSum
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SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 1.021573e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.248439450686642e-4
allele num: 8010
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.107836937734497e-5
allele num: 47442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 602
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South Asian
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allele count: 0
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BaseQRankSum
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SIO_000300: -1.374e0

FS
type: SiteQuality
SIO_000300: 2.197e0

VQSLOD
type: SiteQuality
SIO_000300: -1.738e-1

DP
type: SiteQuality
SIO_000300: 1.02074e6

InbreedingCoeff
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SIO_000300: -5.6e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
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MQRankSum
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SIO_000300: -2.29e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46714
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12892
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3144
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Other
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allele count: 0
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DP
type: SiteQuality
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

East Asian
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Other
type: Population
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African
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allele count: 4
allele frequency: 5.686664771111743e-4
allele num: 7034
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European (Non-Finnish)
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allele count: 3
allele frequency: 6.480601399809903e-5
allele num: 46292
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 6.549932317366054e-5
allele num: 45802
num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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SIO_000300: 1.63e-1

InbreedingCoeff
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SIO_000300: -5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.917e-1

BaseQRankSum
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SIO_000300: 2.01e0

QD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 8
allele frequency: 1.05318588730911e-3
allele num: 7596
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12678
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.73192e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: -6.6e-2

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -1.58e-1

ClippingRankSum
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SIO_000300: -2.18e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 9.50804e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -2.005e0

QD
type: SiteQuality
SIO_000300: 2.831e1

MQRankSum
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.496e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.336e0

VQSLOD
type: SiteQuality
SIO_000300: -2.625e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

QD
type: SiteQuality
SIO_000300: 1.783e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

DP
type: SiteQuality
SIO_000300: 8.48739e5

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 3
allele frequency: 4.89077274209325e-4
allele num: 6134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.566967663824849e-5
allele num: 39646
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 7.874015748031496e-4
allele num: 2540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 490
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MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 4.04e-1

ClippingRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 8.374e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 1
allele frequency: 2.359603586597452e-4
allele num: 4238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.33377783704494e-5
allele num: 29996
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 8
allele frequency: 8.14000814000814e-4
allele num: 9828
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Other
type: Population
allele count: 0
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Latino
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FS
type: SiteQuality
SIO_000300: 2.673e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.463054187192118e-4
allele num: 4060
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 1
allele frequency: 2.808988764044944e-3
allele num: 356
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4336
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European (Non-Finnish)
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allele count: 2
allele frequency: 6.926646810279144e-5
allele num: 28874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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SIO_000300: 9.6e-1

DP
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SIO_000300: 6.30835e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
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SIO_000300: 1.134e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3684
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.111605157847932e-4
allele num: 8996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.897116134060795e-5
allele num: 25660
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

QD
type: SiteQuality
SIO_000300: 4.77e0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.744e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.519e0

InbreedingCoeff
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SIO_000300: -2.41e-2

BaseQRankSum
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SIO_000300: 2.5e0

DP
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SIO_000300: 5.87969e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 391

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1786
bin: 1.75e1
variant carriers: 6

African
type: Population
allele count: 9
allele frequency: 2.076603599446239e-3
allele num: 4334
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 2.217294900221729e-3
allele num: 3608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 288
allele frequency: 1.149700598802395e-2
allele num: 25050
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.5220700152207e-3
allele num: 1314
num of homozygotes: 0

South Asian
type: Population
allele count: 84
allele frequency: 9.45520036019811e-3
allele num: 8884
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.08641975308642e-3
allele num: 324
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQRankSum
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SIO_000300: 2.44e-1

VQSLOD
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SIO_000300: 5.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 5.8034e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2344
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.142506142506142e-4
allele num: 3256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7136
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.219206680584551e-4
allele num: 1916
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 3.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

DP
type: SiteQuality
SIO_000300: 4.59911e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 2
allele frequency: 1.410437235543018e-3
allele num: 1418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.523925632429137e-4
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.369196757553427e-5
allele num: 13570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

QD
type: SiteQuality
SIO_000300: 1.237e1

DP
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SIO_000300: 4.31905e5

VQSLOD
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MQRankSum
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 6.007e0

BaseQRankSum
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SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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ReadPosRankSum
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SIO_000300: 2.93e-1

FS
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -4.37e-2

VQSLOD
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DP
type: SiteQuality
SIO_000300: 4.15384e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 2.71591526344378e-4
allele num: 11046
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.784e-1

ClippingRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.59e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.0e5

FS
type: SiteQuality
SIO_000300: 6.152e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7845
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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Latino
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allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: -2.163e0

QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11862
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.261988894497728e-4
allele num: 7924
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -1.664e0

DP
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
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ClippingRankSum
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FS
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SIO_000300: 0.0e0

QD
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GenotypeDepth
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variant carriers: 178

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Other
type: Population
allele count: 14
allele frequency: 1.822916666666667e-2
allele num: 768
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.255650426921145e-4
allele num: 7964
num of homozygotes: 0

South Asian
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allele count: 79
allele frequency: 6.469046839174582e-3
allele num: 12212
num of homozygotes: 3

Latino
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allele count: 133
allele frequency: 1.309570697124852e-2
allele num: 10156
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 888
allele frequency: 1.471075475448943e-2
allele num: 60364
num of homozygotes: 14

African
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allele count: 25
allele frequency: 2.717982170036964e-3
allele num: 9198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 3.014184397163121e-3
allele num: 5640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

FS
type: SiteQuality
SIO_000300: 9.11e-1

MQ
type: SiteQuality
SIO_000300: 6.022e1

BaseQRankSum
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SIO_000300: 1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
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SIO_000300: 5.41e0

DP
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SIO_000300: 1.131063e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.723e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.807767752059631e-5
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.956220056170494e-5
allele num: 60530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.166377816291161e-4
allele num: 9232
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
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FS
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SIO_000300: 4.89e0

BaseQRankSum
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MQRankSum
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SIO_000300: -2.2e-2

DP
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SIO_000300: 1.142881e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12576
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.682416731216112e-5
allele num: 10328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
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East Asian
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allele count: 0
allele frequency: 0.0e0
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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SIO_000300: 1.93e-1

InbreedingCoeff
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BaseQRankSum
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VQSLOD
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SIO_000300: 1.43e0

DP
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SIO_000300: 1.190476e6

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5770
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East Asian
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allele count: 1
allele frequency: 1.228803145736053e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.909125620465827e-4
allele num: 10476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 9
allele frequency: 9.590792838874681e-4
allele num: 9384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.473958501926002e-5
allele num: 61786
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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QD
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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SIO_000300: -2.327e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.24e-1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.240138e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.613059328322096e-5
allele num: 61994
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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QD
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BaseQRankSum
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FS
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: 1.5e-3

ClippingRankSum
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SIO_000300: -7.66e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13132
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 2.08113213588192e-4
allele num: 62466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 1.28121e6

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -4.67e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
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SIO_000300: 2.33e-1

VQSLOD
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SIO_000300: 5.6e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.918408716584315e-5
allele num: 63144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.459346561241235e-5
allele num: 13406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.147e0

InbreedingCoeff
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DP
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QD
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ClippingRankSum
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SIO_000300: -5.41e-1

MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.598e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
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SIO_000300: 1.8e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14066
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.117498519188203e-5
allele num: 64154
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.030078285949732e-4
allele num: 9708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 64218
num of homozygotes: 0

Latino
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Other
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African
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European (Finnish)
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 64682
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European (Finnish)
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VQSLOD
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.02221616464495e-3
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African
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European (Non-Finnish)
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allele frequency: 1.544544668231805e-5
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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QD
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.633939233116624e-5
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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FS
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MQ
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MQRankSum
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8562
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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SIO_000300: 1.84e-1

DP
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SIO_000300: 1.401608e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Other
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East Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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ReadPosRankSum
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FS
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MQ
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DP
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 48935
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.29553264604811e-4
allele num: 16296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 1.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.488e0

QD
type: SiteQuality
SIO_000300: 1.174e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-3

DP
type: SiteQuality
SIO_000300: 1.453305e6

GenotypeDepth
all individuals: 14
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 15204
bin: 2.75e1
variant carriers: 578

GenotypeDepth
all individuals: 3145
bin: 3.25e1
variant carriers: 725

GenotypeDepth
all individuals: 316
bin: 9.75e1
variant carriers: 313

GenotypeDepth
all individuals: 961
bin: 5.25e1
variant carriers: 941

GenotypeDepth
all individuals: 1017
bin: 4.75e1
variant carriers: 977

GenotypeDepth
all individuals: 545
bin: 6.75e1
variant carriers: 534

GenotypeDepth
all individuals: 1067
bin: 4.25e1
variant carriers: 972

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 28

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8940
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variant carriers: 8806

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 43603
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variant carriers: 23

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 781
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variant carriers: 29

GenotypeQuality
all individuals: 572
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 4594
bin: 6.75e1
variant carriers: 24

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1058
bin: 7.25e1
variant carriers: 21

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 16

South Asian
type: Population
allele count: 1188
allele frequency: 7.247437774524158e-2
allele num: 16392
num of homozygotes: 51

Latino
type: Population
allele count: 374
allele frequency: 3.253871585174874e-2
allele num: 11494
num of homozygotes: 2

East Asian
type: Population
allele count: 350
allele frequency: 4.060324825986079e-2
allele num: 8620
num of homozygotes: 11

Other
type: Population
allele count: 87
allele frequency: 9.645232815964523e-2
allele num: 902
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 903
allele frequency: 1.389230769230769e-1
allele num: 6500
num of homozygotes: 64

African
type: Population
allele count: 1410
allele frequency: 1.3715953307393e-1
allele num: 10280
num of homozygotes: 93

European (Non-Finnish)
type: Population
allele count: 5177
allele frequency: 7.808917581754556e-2
allele num: 66296
num of homozygotes: 231

DP
type: SiteQuality
SIO_000300: 1.693299e6

FS
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeDepth
all individuals: 19416
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 14
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 163
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variant carriers: 0

GenotypeQuality
all individuals: 128
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GenotypeQuality
all individuals: 209
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variant carriers: 5

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
all individuals: 5997
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 49849
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variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
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variant carriers: 0

GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 1461
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GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018230109863576e-5
allele num: 66264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.35e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

FS
type: SiteQuality
SIO_000300: 4.773e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

DP
type: SiteQuality
SIO_000300: 1.46636e6

GenotypeDepth
all individuals: 35378
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 525
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variant carriers: 0

GenotypeDepth
all individuals: 19428
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variant carriers: 0

GenotypeDepth
all individuals: 157
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variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 46
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GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5984
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GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 203
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variant carriers: 1

GenotypeQuality
all individuals: 414
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variant carriers: 0

GenotypeQuality
all individuals: 734
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 49599
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 1464
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variant carriers: 0

GenotypeQuality
all individuals: 1087
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.728e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

QD
type: SiteQuality
SIO_000300: 7.29e0

DP
type: SiteQuality
SIO_000300: 1.465101e6

GenotypeDepth
all individuals: 25
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3821
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variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 2

GenotypeQuality
all individuals: 49674
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GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1454
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 134
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 1075
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.245e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 9.67e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

DP
type: SiteQuality
SIO_000300: 1.463202e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 323
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 5933
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GenotypeQuality
all individuals: 891
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 1452
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GenotypeQuality
all individuals: 49633
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GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 163
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GenotypeQuality
all individuals: 396
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 1072
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GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510847887834653e-5
allele num: 66188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 8.555e0

VQSLOD
type: SiteQuality
SIO_000300: -4.093e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 1.462176e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

GenotypeDepth
all individuals: 26
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variant carriers: 0

GenotypeDepth
all individuals: 1
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GenotypeDepth
all individuals: 2
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GenotypeDepth
all individuals: 8
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GenotypeDepth
all individuals: 47
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GenotypeQuality
all individuals: 190
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 386
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 128
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 1044
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 49450
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GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 1431
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GenotypeQuality
all individuals: 5867
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variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512813530604218e-5
allele num: 66102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.498e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.459418e6

QD
type: SiteQuality
SIO_000300: 1.779e1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 514
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513271390091099e-5
allele num: 66082
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 6.1e0

DP
type: SiteQuality
SIO_000300: 1.458473e6

FS
type: SiteQuality
SIO_000300: 3.802e0

VQSLOD
type: SiteQuality
SIO_000300: -7.838000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeDepth
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1458
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3717
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 7.25e1
variant carriers: 0