X-155239720-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239720
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239720
    reference: chr 0
allele count: 1
allele frequency: 1.037839633019906e-5
allele num: 96354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*203G>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2448G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*203G>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1212G>C
  hgvsp: ENST00000244174.5:c.1212G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1149G>C
  hgvsp: ENST00000424344.3:c.1149G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1255
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr404Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

X-155239730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239730
    reference: chr 0
allele count: 2
allele frequency: 2.088903743315508e-5
allele num: 95744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*213C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1222C>T
  hgvsp: ENST00000244174.5:c.1222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2458C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*213C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1159C>T
  hgvsp: ENST00000424344.3:c.1159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 188
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  variant carriers: 0
hgvs: p.Leu408Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-155239731-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239731
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239731
    reference: chr 0
allele count: 1
allele frequency: 1.041384624997397e-5
allele num: 96026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*214T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*214T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1223T>C
  hgvsp: ENSP00000244174.5:p.Leu408Pro
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1160T>C
  hgvsp: ENSP00000388918.3:p.Leu387Pro
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2459T>C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu408Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-155239735-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239735
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239735
    reference: chr 0
allele count: 1
allele frequency: 1.037064692095493e-5
allele num: 96426
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1227A>G
  hgvsp: ENST00000244174.5:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1164A>G
  hgvsp: ENST00000424344.3:c.1164A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2463A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*218A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*218A>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro409Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-155239738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239738
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239738
    reference: chr 0
allele count: 1
allele frequency: 1.030864070263695e-5
allele num: 97006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1230G>A
  hgvsp: ENST00000244174.5:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*221G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*221G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2466G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1167G>A
  hgvsp: ENST00000424344.3:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4106
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln410Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-155239747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239747
    reference: chr 0
allele count: 1
allele frequency: 1.010693133350852e-5
allele num: 98942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2475G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*230G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1176G>A
  hgvsp: ENSP00000388918.3:p.Trp392Ter
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1239G>A
  hgvsp: ENSP00000244174.5:p.Trp413Ter
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*230G>A
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2029
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 640
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29968
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4745
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp413Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

X-155239749-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239749
    reference: chr 0
allele count: 2
allele frequency: 2.014260967650969e-5
allele num: 99292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*232C>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1178C>A
  hgvsp: ENSP00000388918.3:p.Ala393Asp
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*232C>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1241C>A
  hgvsp: ENSP00000244174.5:p.Ala414Asp
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2477C>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 207
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  variant carriers: 0
hgvs: p.Ala414Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

X-155239751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239751
    reference: chr 0
allele count: 1
allele frequency: 1.002807862013638e-5
allele num: 99720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1180C>T
  hgvsp: ENSP00000388918.3:p.Pro394Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*234C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2479C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1243C>T
  hgvsp: ENSP00000244174.5:p.Pro415Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*234C>T
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31027
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro415Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-155239754-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239755
    reference: chr 0
allele count: 1
allele frequency: 1.000080006400512e-5
allele num: 99992
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*237_*238insT
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1183_1184insT
  hgvsp: ENSP00000388918.3:p.Thr395IlefsTer5
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*237_*238insT
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1246_1247insT
  hgvsp: ENSP00000244174.5:p.Thr416IlefsTer5
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2482_433+2483insT
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr416IlefsTer5
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

X-155239755-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239756
    reference: chr 0
allele count: 1
allele frequency: 9.967108541812021e-6
allele num: 100330
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1184_1185insT
  hgvsp: ENSP00000388918.3:p.Ser396ValfsTer4
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*238_*239insT
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*238_*239insT
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2483_433+2484insT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1247_1248insT
  hgvsp: ENSP00000244174.5:p.Ser417ValfsTer4
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser417ValfsTer4
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

X-155239755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239755
    reference: chr 0
allele count: 23
allele frequency: 2.292434964616765e-4
allele num: 100330
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1247C>T
  hgvsp: ENSP00000244174.5:p.Thr416Met
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*238C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*238C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1184C>T
  hgvsp: ENSP00000388918.3:p.Thr395Met
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2483C>T
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11673
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr416Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-155239756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239756
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239756
    reference: chr 0
allele count: 4
allele frequency: 3.976459360585335e-5
allele num: 100592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*239G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2484G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1185G>A
  hgvsp: ENST00000424344.3:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*239G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1248G>A
  hgvsp: ENST00000244174.5:c.1248G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr416Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-155239757-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239757
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239757
    reference: chr 0
allele count: 1
allele frequency: 9.926149448106091e-6
allele num: 100744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*240T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2485T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*240T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1249T>C
  hgvsp: ENSP00000244174.5:p.Ser417Pro
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1186T>C
  hgvsp: ENSP00000388918.3:p.Ser396Pro
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser417Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-155239757-T-TGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239757
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239759
    reference: chr 0
allele count: 19
allele frequency: 1.885968395140157e-4
allele num: 100744
alternate allele: TGC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*240_*241insGC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2485_433+2486insGC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*240_*241insGC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1186_1187insGC
  hgvsp: ENSP00000388918.3:p.Ser396CysfsTer3
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1249_1250insGC
  hgvsp: ENSP00000244174.5:p.Ser417CysfsTer3
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11726
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Ser417CysfsTer3
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

X-155239760-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239760
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239758
    reference: chr 0
allele count: 20
allele frequency: 1.980158808736461e-4
allele num: 101002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*244_*245delTG
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1190_1191delTG
  hgvsp: ENSP00000388918.3:p.Leu397HisfsTer2
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*244_*245delTG
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1253_1254delTG
  hgvsp: ENSP00000244174.5:p.Leu418HisfsTer2
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2489_433+2490delTG
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu418HisfsTer2
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: CTG
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

X-155239763-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239762
    reference: chr 0
allele count: 2
allele frequency: 1.971725456947375e-5
allele num: 101434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2492delC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1256delC
  hgvsp: ENSP00000244174.5:p.Thr419IlefsTer120
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*247delC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*247delC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1193delC
  hgvsp: ENSP00000388918.3:p.Thr398IlefsTer120
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr419IlefsTer120
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AC
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-155239765-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239765
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239765
    reference: chr 0
allele count: 20
allele frequency: 1.967496950379727e-4
allele num: 101652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2493T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*248T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1194T>C
  hgvsp: ENST00000424344.3:c.1194T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1257T>C
  hgvsp: ENST00000244174.5:c.1257T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*248T>C
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr419Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-155239769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239769
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239769
    reference: chr 0
allele count: 2
allele frequency: 1.960284633328759e-5
allele num: 102026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*252C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1261C>T
  hgvsp: ENSP00000244174.5:p.Pro421Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*252C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1198C>T
  hgvsp: ENSP00000388918.3:p.Pro400Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2497C>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 621
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genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro421Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-155239770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239770
    reference: chr 0
allele count: 29
allele frequency: 2.836907184222883e-4
allele num: 102224
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1262C>T
  hgvsp: ENSP00000244174.5:p.Pro421Leu
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1199C>T
  hgvsp: ENSP00000388918.3:p.Pro400Leu
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2498C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*253C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*253C>T
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30833
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro421Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-155239771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239771
    reference: chr 0
allele count: 84
allele frequency: 8.197201241290473e-4
allele num: 102474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1200G>A
  hgvsp: ENST00000424344.3:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1263G>A
  hgvsp: ENST00000244174.5:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*254G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2499G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*254G>A
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12289
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 16
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 11
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10536
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.75e1
  variant carriers: 4
hgvs: p.Pro421Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-155239771-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239771
    reference: chr 0
allele count: 2
allele frequency: 1.951714581259637e-5
allele num: 102474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2499G>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1263G>C
  hgvsp: ENST00000244174.5:c.1263G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1200G>C
  hgvsp: ENST00000424344.3:c.1200G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*254G>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*254G>C
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 399
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro421Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

X-155239778-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239778
    reference: chr 0
allele count: 1
allele frequency: 9.607993850883936e-6
allele num: 104080
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1270C>G
  hgvsp: ENSP00000244174.5:p.Pro424Ala
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2506C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*261C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1207C>G
  hgvsp: ENSP00000388918.3:p.Pro403Ala
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*261C>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9944
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6098
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro424Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

X-155239785-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239785
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239785
    reference: chr 0
allele count: 4
allele frequency: 3.811992528494644e-5
allele num: 104932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1214C>G
  hgvsp: ENSP00000388918.3:p.Ser405Ter
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2513C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*268C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*268C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1277C>G
  hgvsp: ENSP00000244174.5:p.Ser426Ter
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26819
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser426Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

X-155239787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239787
    reference: chr 0
allele count: 1
allele frequency: 9.500646043930987e-6
allele num: 105256
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1279G>A
  hgvsp: ENSP00000244174.5:p.Glu427Lys
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2515G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*270G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*270G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1216G>A
  hgvsp: ENSP00000388918.3:p.Glu406Lys
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu427Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-155239788-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239788
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239787
    reference: chr 0
allele count: 1
allele frequency: 9.490907710413424e-6
allele num: 105364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*274delG
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1220delG
  hgvsp: ENSP00000388918.3:p.Gly407AlafsTer111
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2519delG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*274delG
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1283delG
  hgvsp: ENSP00000244174.5:p.Gly428AlafsTer111
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly428AlafsTer111
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: AG
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS

X-155239795-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239795
    reference: chr 0
allele count: 1
allele frequency: 9.499924000607994e-6
allele num: 105264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1287C>G
  hgvsp: ENSP00000244174.5:p.Ser429Arg
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*278C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1224C>G
  hgvsp: ENSP00000388918.3:p.Ser408Arg
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2523C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*278C>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser429Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-155239798-G-GAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239801
    reference: chr 0
allele count: 163
allele frequency: 1.707700366684128e-3
allele num: 95450
alternate allele: GAGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1250_1252dupGCA
  hgvsp: ENSP00000388918.3:p.Ser417dup
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*304_*306dupGCA
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1313_1315dupGCA
  hgvsp: ENSP00000244174.5:p.Ser438dup
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2549_433+2551dupGCA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*304_*306dupGCA
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 7.5e0
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 1.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 19682
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 2.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.75e1
  variant carriers: 5
hgvs: p.Ser438dup
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-155239798-G-GAGCAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239804
    reference: chr 0
allele count: 9
allele frequency: 9.429020429544264e-5
allele num: 95450
alternate allele: GAGCAGC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*301_*306dupGCAGCA
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1247_1252dupGCAGCA
  hgvsp: ENSP00000388918.3:p.Ser416_Ser417dup
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1310_1315dupGCAGCA
  hgvsp: ENSP00000244174.5:p.Ser437_Ser438dup
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*301_*306dupGCAGCA
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 7.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19682
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 6
hgvs: p.Ser437_Ser438dup
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-155239798-GAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239795
    reference: chr 0
allele count: 958
allele frequency: 1.003666841278156e-2
allele num: 95450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1250_1252delGCA
  hgvsp: ENSP00000388918.3:p.Ser417del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1313_1315delGCA
  hgvsp: ENSP00000244174.5:p.Ser438del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*304_*306delGCA
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*304_*306delGCA
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2549_433+2551delGCA
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 7.5e0
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 1.25e1
  variant carriers: 376
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 19682
  bin: 6.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 5.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 5.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 576
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 2.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 63
hgvs: p.Ser438del
num of homozygotes: 56
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: GAGC
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

X-155239798-GAGCAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239792
    reference: chr 0
allele count: 32
allele frequency: 3.352540597171294e-4
allele num: 95450
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1310_1315delGCAGCA
  hgvsp: ENSP00000244174.5:p.Ser437_Ser438del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1247_1252delGCAGCA
  hgvsp: ENSP00000388918.3:p.Ser416_Ser417del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*301_*306delGCAGCA
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*301_*306delGCAGCA
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19682
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser437_Ser438del
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: GAGCAGC
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

X-155239798-GAGCAGCAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239789
    reference: chr 0
allele count: 8
allele frequency: 8.381351492928235e-5
allele num: 95450
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4252
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9118
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 7.095217823187172e-5
  allele num: 14094
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 5.444250871080139e-5
  allele num: 55104
  num of homozygotes: 0
population: African
population: East Asian
population: Other
reference allele: GAGCAGCAGC
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

X-155239798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239798
    reference: chr 0
allele count: 1
allele frequency: 1.047668936616029e-5
allele num: 95450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2526G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1290G>A
  hgvsp: ENST00000244174.5:c.1290G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1227G>A
  hgvsp: ENST00000424344.3:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*281G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*281G>A
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 391
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg430Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-155239799-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239799
    reference: chr 0
allele count: 1
allele frequency: 1.31637837980149e-5
allele num: 75966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2527A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*282A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1291A>G
  hgvsp: ENSP00000244174.5:p.Ser431Gly
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1228A>G
  hgvsp: ENSP00000388918.3:p.Ser410Gly
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*282A>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12216
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2908
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
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genotype quality: GenotypeQuality
  all individuals: 1175
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2205
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genotype quality: GenotypeQuality
  all individuals: 166
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser431Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-155239804-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239804
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239804
    reference: chr 0
allele count: 9
allele frequency: 1.10777411254985e-4
allele num: 81244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1233C>G
  hgvsp: ENSP00000388918.3:p.Ser411Arg
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1296C>G
  hgvsp: ENSP00000244174.5:p.Ser432Arg
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*287C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*287C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2532C>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13491
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9744
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7386
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
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genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 126
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genotype quality: GenotypeQuality
  all individuals: 1083
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genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
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genotype quality: GenotypeQuality
  all individuals: 1781
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genotype quality: GenotypeQuality
  all individuals: 1507
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genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Ser432Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-155239818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239818
    reference: chr 0
allele count: 4
allele frequency: 5.016554630279924e-5
allele num: 79736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1247G>A
  hgvsp: ENSP00000388918.3:p.Ser416Asn
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1310G>A
  hgvsp: ENSP00000244174.5:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*301G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*301G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2546G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
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genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1223
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10298
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genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser437Asn
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

X-155239819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239819
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239819
    reference: chr 0
allele count: 25
allele frequency: 3.199549503429917e-4
allele num: 78136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2547C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*302C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1248C>T
  hgvsp: ENST00000424344.3:c.1248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1311C>T
  hgvsp: ENST00000244174.5:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*302C>T
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14454
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8972
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9388
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Ser437Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-155239820-AGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239818
    reference: chr 0
allele count: 1
allele frequency: 1.286901912336242e-5
allele num: 77706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*304_*305delGC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1250_1251delGC
  hgvsp: ENSP00000388918.3:p.Ser417LysfsTer39
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2549_433+2550delGC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*304_*305delGC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1313_1314delGC
  hgvsp: ENSP00000244174.5:p.Ser438LysfsTer39
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser438LysfsTer39
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AGC
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

X-155239821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239821
    reference: chr 0
allele count: 126
allele frequency: 1.822442072376985e-3
allele num: 69138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1250G>A
  hgvsp: ENSP00000388918.3:p.Ser417Asn
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1313G>A
  hgvsp: ENSP00000244174.5:p.Ser438Asn
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2549G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*304G>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*304G>A
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 2.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 1.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 7.5e0
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 9.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8957
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 17173
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 4.25e1
  variant carriers: 5
hgvs: p.Ser438Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

X-155239821-G-GCAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239824
    reference: chr 0
allele count: 3
allele frequency: 4.339147791373774e-5
allele num: 69138
alternate allele: GCAA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*315_*317dupAAC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1324_1326dupAAC
  hgvsp: ENSP00000244174.5:p.Asn442dup
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*315_*317dupAAC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1261_1263dupAAC
  hgvsp: ENSP00000388918.3:p.Asn421dup
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2560_433+2562dupAAC
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8957
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn442dup
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

X-155239821-GCAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239818
    reference: chr 0
allele count: 119
allele frequency: 1.721195290578264e-3
allele num: 69138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2560_433+2562delAAC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*315_*317delAAC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*315_*317delAAC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1324_1326delAAC
  hgvsp: ENSP00000244174.5:p.Asn442del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1261_1263delAAC
  hgvsp: ENSP00000388918.3:p.Asn421del
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 7.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 8957
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 17173
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 9.75e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 4
hgvs: p.Asn442del
num of homozygotes: 2
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GCAA
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-155239821-GCAACAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239815
    reference: chr 0
allele count: 52
allele frequency: 7.521189505047875e-4
allele num: 69138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*312_*317delAACAAC
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1258_1263delAACAAC
  hgvsp: ENSP00000388918.3:p.Asn420_Asn421del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1321_1326delAACAAC
  hgvsp: ENSP00000244174.5:p.Asn441_Asn442del
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*312_*317delAACAAC
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 1.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 7.5e0
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 2.5e0
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 4.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 17173
  bin: 2.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8957
  bin: 7.5e0
  variant carriers: 55
hgvs: p.Asn441_Asn442del
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: GCAACAA
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

X-155239824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239824
    reference: chr 0
allele count: 12175
allele frequency: 2.058674332093338e-1
allele num: 59140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1253A>G
  hgvsp: ENSP00000388918.3:p.Asn418Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*307A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*307A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1316A>G
  hgvsp: ENSP00000244174.5:p.Asn439Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2552A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 2.5e0
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.75e1
  variant carriers: 663
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 1.75e1
  variant carriers: 2985
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 7.5e0
  variant carriers: 2268
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 2.25e1
  variant carriers: 1628
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 15819
  bin: 1.25e1
  variant carriers: 3541
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.75e1
  variant carriers: 360
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 206
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 16131
  bin: 2.25e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 8872
  bin: 7.5e0
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 173
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 6.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 7419
  bin: 2.5e0
  variant carriers: 32
hgvs: p.Asn439Ser
num of homozygotes: 413
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

X-155239827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239827
    reference: chr 0
allele count: 12034
allele frequency: 1.895536023690262e-1
allele num: 63486
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1319A>G
  hgvsp: ENSP00000244174.5:p.Asn440Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1256A>G
  hgvsp: ENSP00000388918.3:p.Asn419Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2555A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*310A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*310A>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 13753
  bin: 7.5e0
  variant carriers: 2398
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 16413
  bin: 1.25e1
  variant carriers: 3714
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 3.25e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 558
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 1478
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 10444
  bin: 2.5e0
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 1.75e1
  variant carriers: 2954
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 19828
  bin: 2.25e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 6.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 1.75e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 11625
  bin: 9.75e1
  variant carriers: 11619
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 178
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 2.75e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.5e0
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 11053
  bin: 7.5e0
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 3.25e1
  variant carriers: 187
hgvs: p.Asn440Ser
num of homozygotes: 434
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-155239830-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239830
    reference: chr 0
allele count: 2
allele frequency: 3.337004037774885e-5
allele num: 59934
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1322A>G
  hgvsp: ENSP00000244174.5:p.Asn441Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*313A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1259A>G
  hgvsp: ENSP00000388918.3:p.Asn420Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*313A>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2558A>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn441Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-155239835-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239835
    reference: chr 0
allele count: 1
allele frequency: 1.896094046264695e-5
allele num: 52740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*318T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2563T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*318T>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
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  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1264T>C
  hgvsp: ENSP00000388918.3:p.Tyr422His
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1327T>C
  hgvsp: ENSP00000244174.5:p.Tyr443His
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr443His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-155239839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239839
    reference: chr 0
allele count: 1
allele frequency: 2.075636182489933e-5
allele num: 48178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2567G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*322G>C
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1268G>C
  hgvsp: ENSP00000388918.3:p.Cys423Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1331G>C
  hgvsp: ENSP00000244174.5:p.Cys444Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*322G>C
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Cys444Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-155239854-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239854
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239854
    reference: chr 0
allele count: 1
allele frequency: 4.460303300624443e-5
allele num: 22420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1346A>T
  hgvsp: ENSP00000244174.5:p.Tyr449Phe
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1283A>T
  hgvsp: ENSP00000388918.3:p.Tyr428Phe
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*337A>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*337A>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2582A>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Tyr449Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-155239856-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239856
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239856
    reference: chr 0
allele count: 3
allele frequency: 1.412163434381472e-4
allele num: 21244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2584G>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*339G>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*339G>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1285G>T
  hgvsp: ENSP00000388918.3:p.Gly429Trp
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1348G>T
  hgvsp: ENSP00000244174.5:p.Gly450Trp
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly450Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-155239857-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239857
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239857
    reference: chr 0
allele count: 2
allele frequency: 9.871668311944718e-5
allele num: 20260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1286G>T
  hgvsp: ENSP00000388918.3:p.Gly429Val
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*340G>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*340G>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2585G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1349G>T
  hgvsp: ENSP00000244174.5:p.Gly450Val
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1344
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly450Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-155239868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239868
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239868
    reference: chr 0
allele count: 1
allele frequency: 1.272912423625254e-4
allele num: 7856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1297C>T
  hgvsp: ENSP00000388918.3:p.Leu433Phe
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*351C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1360C>T
  hgvsp: ENSP00000244174.5:p.Leu454Phe
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2596C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*351C>T
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21979
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu454Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-155239879-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239879
    reference: chr 0
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*362C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1371C>G
  hgvsp: ENST00000244174.5:c.1371C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2607C>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1308C>G
  hgvsp: ENST00000424344.3:c.1308C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*362C>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20968
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu457Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-155239899-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239899
    reference: chr 0
allele count: 1
allele frequency: 1.860119047619048e-4
allele num: 5376
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1391C>A
  hgvsp: ENSP00000244174.5:p.Ser464Tyr
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1328C>A
  hgvsp: ENSP00000388918.3:p.Ser443Tyr
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*382C>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2627C>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*382C>A
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser464Tyr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-155239904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239904
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239904
    reference: chr 0
allele count: 1
allele frequency: 1.950078003120125e-4
allele num: 5128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2632C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1333C>T
  hgvsp: ENSP00000388918.3:p.Pro445Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1396C>T
  hgvsp: ENSP00000244174.5:p.Pro466Ser
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*387C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*387C>T
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro466Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

X-155239932-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239932
    reference: chr 0
allele count: 1
allele frequency: 2.284148012791229e-4
allele num: 4378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1361C>G
  hgvsp: ENSP00000388918.3:p.Ser454Cys
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2660C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1424C>G
  hgvsp: ENSP00000244174.5:p.Ser475Cys
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*415C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*415C>G
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser475Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-155239971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155239971
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155239971
    reference: chr 0
allele count: 2
allele frequency: 8.620689655172414e-4
allele num: 2320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*454C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1400C>T
  hgvsp: ENSP00000388918.3:p.Ala467Val
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*454C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1463C>T
  hgvsp: ENSP00000244174.5:p.Ala488Val
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2699C>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala488Val
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

X-155240011-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155240011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155240011
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*494T>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1503T>A
  hgvsp: ENSP00000244174.5:p.His501Gln
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*494T>A
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2739T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1440T>A
  hgvsp: ENSP00000388918.3:p.His480Gln
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6548
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His501Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-155240055-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155240055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155240055
    reference: chr 0
allele count: 2
allele frequency: 5.952380952380952e-3
allele num: 336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2783C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*538C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*538C>G
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1484C>G
  hgvsp: ENSP00000388918.3:p.Ala495Gly
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1547C>G
  hgvsp: ENSP00000244174.5:p.Ala516Gly
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5819
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala516Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

X-155240057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155240057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155240057
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.433+2785C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000358431
  ensembl transcript: ENST00000369423
  gene symbol: IL9R
  hgvsc: ENST00000369423.2:c.*540C>T
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000388918
  ensembl transcript: ENST00000424344
  gene symbol: IL9R
  hgvsc: ENST00000424344.3:c.1486C>T
  hgvsp: ENSP00000388918.3:p.Arg496Trp
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000244174
  ensembl transcript: ENST00000244174
  gene symbol: IL9R
  hgvsc: ENST00000244174.5:c.1549C>T
  hgvsp: ENSP00000244174.5:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/6030
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000124334
  ensembl protein: ENSP00000438112
  ensembl transcript: ENST00000540897
  gene symbol: IL9R
  hgvsc: ENST00000540897.1:c.*540C>T
  variant of: http://identifiers.org/hgnc/6030
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg517Trp
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

X-155250594-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155250594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155250594
    reference: chr 0
allele count: 33
allele frequency: 1.966626936829559e-2
allele num: 1678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.104A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-762A>G
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 85
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 510
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 5.357142857142857e-2
  allele num: 56
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-155250604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155250604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155250604
    reference: chr 0
allele count: 2
allele frequency: 1.15473441108545e-3
allele num: 1732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-752C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.114C>T
  variant of: http://identifiers.org/hgnc/31685
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 100
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-155250605-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155250605
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155250605
    reference: chr 0
allele count: 1
allele frequency: 5.780346820809249e-4
allele num: 1730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.115G>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-751G>A
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 98
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

X-155250656-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155250656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155250656
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.31G>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-700G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.166G>C
  variant of: http://identifiers.org/hgnc/31685
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-155250722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155250722
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155250722
    reference: chr 0
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.232T>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.97T>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-634T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.17T>C
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-155251303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251303
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251303
    reference: chr 0
allele count: 1
allele frequency: 3.810975609756098e-4
allele num: 2624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.62G>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.194G>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-56G>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.311G>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.189-43G>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-56G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-53G>A
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-155251306-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251306
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251306
    reference: chr 0
allele count: 1
allele frequency: 3.734129947722181e-4
allele num: 2678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.197G>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.314G>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.65G>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-53G>C
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-50G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-53G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.189-40G>C
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-155251314-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251314
    reference: chr 0
allele count: 2
allele frequency: 7.077140835102619e-4
allele num: 2826
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.322C>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.73C>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-42C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-45C>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-45C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.189-32C>A
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.205C>A
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-155251322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251322
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251322
    reference: chr 0
allele count: 8
allele frequency: 2.616088947024199e-3
allele num: 3058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.213C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-34C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-37C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.189-24C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.330C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.81C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-37C>T
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-155251338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251338
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251338
    reference: chr 0
allele count: 24
allele frequency: 6.451612903225806e-3
allele num: 3720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-18C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-21C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.189-8C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.346C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.229C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-21C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.97C>T
  variant of: http://identifiers.org/hgnc/31685
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 2
hgvs: n.189-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-155251351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251351
    reference: chr 0
allele count: 188
allele frequency: 4.621435594886922e-2
allele num: 4068
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-8C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000479401
  gene symbol: WASH6P
  hgvsc: ENST00000479401.1:n.10C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-8C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.110C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.359C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.194C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.434-5C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.242C>T
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 16
hgvs: n.109-8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

X-155251357-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251357
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251357
    reference: chr 0
allele count: 1
allele frequency: 1.815541031227306e-4
allele num: 5508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000479401
  gene symbol: WASH6P
  hgvsc: ENST00000479401.1:n.16A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.200A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.382-2A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000492963
  gene symbol: WASH6P
  hgvsc: ENST00000492963.1:n.5A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.435A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.365A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.109-2A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000340131
  gene symbol: WASH6P
  hgvsc: ENST00000340131.7:n.5A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000460206
  gene symbol: WASH6P
  hgvsc: ENST00000460206.1:n.5A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.248A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.116A>G
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
hgvs: n.109-2A>G
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-155251363-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251363
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251363
    reference: chr 0
allele count: 12
allele frequency: 2.059732234809475e-3
allele num: 5826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000492963
  gene symbol: WASH6P
  hgvsc: ENST00000492963.1:n.11A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.386A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.113A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000460206
  gene symbol: WASH6P
  hgvsc: ENST00000460206.1:n.11A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000340131
  gene symbol: WASH6P
  hgvsc: ENST00000340131.7:n.11A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.206A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.122A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.371A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000479401
  gene symbol: WASH6P
  hgvsc: ENST00000479401.1:n.22A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.254A>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.441A>T
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-155251371-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251371
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251371
    reference: chr 0
allele count: 7
allele frequency: 1.127214170692432e-3
allele num: 6210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.214C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.394C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.262C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.379C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000460206
  gene symbol: WASH6P
  hgvsc: ENST00000460206.1:n.19C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000340131
  gene symbol: WASH6P
  hgvsc: ENST00000340131.7:n.19C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000479401
  gene symbol: WASH6P
  hgvsc: ENST00000479401.1:n.30C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.130C>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.449C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.121C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000492963
  gene symbol: WASH6P
  hgvsc: ENST00000492963.1:n.19C>G
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-155251371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251371
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251371
    reference: chr 0
allele count: 54
allele frequency: 8.695652173913044e-3
allele num: 6210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.214C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000340131
  gene symbol: WASH6P
  hgvsc: ENST00000340131.7:n.19C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.130C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.262C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.449C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.121C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000492963
  gene symbol: WASH6P
  hgvsc: ENST00000492963.1:n.19C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.394C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.379C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000460206
  gene symbol: WASH6P
  hgvsc: ENST00000460206.1:n.19C>T
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000479401
  gene symbol: WASH6P
  hgvsc: ENST00000479401.1:n.30C>T
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-155251389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24155251389
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24155251389
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7174
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000285718
  gene symbol: AJ271736.10
  hgvsc: ENST00000285718.7:n.139A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000460206
  gene symbol: WASH6P
  hgvsc: ENST00000460206.1:n.37A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000476066
  gene symbol: WASH6P
  hgvsc: ENST00000476066.1:n.412A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270726
  ensembl transcript: ENST00000483543
  gene symbol: AJ271736.10
  hgvsc: ENST00000483543.2:n.467A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000496011
  gene symbol: WASH6P
  hgvsc: ENST00000496011.1:n.280A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000359512
  gene symbol: WASH6P
  hgvsc: ENST00000359512.3:n.232A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000479401
  gene symbol: WASH6P
  hgvsc: ENST00000479401.1:n.48A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000461007
  gene symbol: WASH6P
  hgvsc: ENST00000461007.1:n.397A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000340131
  gene symbol: WASH6P
  hgvsc: ENST00000340131.7:n.37A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000492963
  gene symbol: WASH6P
  hgvsc: ENST00000492963.1:n.37A>G
  variant of: http://identifiers.org/hgnc/31685
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182484
  ensembl transcript: ENST00000469624
  gene symbol: WASH6P
  hgvsc: ENST00000469624.1:n.148A>G
  variant of: http://identifiers.org/hgnc/31685
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 3390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.781578478531979e-5
allele num: 56130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.5e0

FS
type: SiteQuality
SIO_000300: 1.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.043863e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.002e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 2.646e1

GenotypeQuality
all individuals: 315
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.591695998850658e-5
allele num: 55684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 6.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.847e1

FS
type: SiteQuality
SIO_000300: 7.0056e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 2.802e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

DP
type: SiteQuality
SIO_000300: 1.045467e6

GenotypeQuality
all individuals: 3731
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.79160097463093e-5
allele num: 55816
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 7.694e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

MQ
type: SiteQuality
SIO_000300: 2.483e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55878
num of homozygotes: 0

South Asian
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allele frequency: 6.942515967786726e-5
allele num: 14404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4264
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 2.978e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.098e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.780943900267142e-5
allele num: 56150
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.85e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5462
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6666
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Latino
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allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14740
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.757222183172841e-5
allele num: 56908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.268e0

MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.169736e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

QD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -7.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.504099796762212e-5
allele num: 57076
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 2.594e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 2.92e0

VQSLOD
type: SiteQuality
SIO_000300: -5.614e0

FS
type: SiteQuality
SIO_000300: 4.888e0

DP
type: SiteQuality
SIO_000300: 1.178733e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.74727425216662e-5
allele num: 57232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.978e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.564e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e0

FS
type: SiteQuality
SIO_000300: 5.086e0

DP
type: SiteQuality
SIO_000300: 1.18442e6

MQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
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African
type: Population
allele count: 1
allele frequency: 1.787629603146228e-4
allele num: 5594
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14870
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

FS
type: SiteQuality
SIO_000300: 1.3103e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.188623e6

VQSLOD
type: SiteQuality
SIO_000300: -2.207e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57584
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele num: 5628
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Other
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 10048
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European (Non-Finnish)
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allele num: 57584
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East Asian
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African
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allele frequency: 3.375977256574271e-3
allele num: 5628
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South Asian
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European (Finnish)
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Other
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FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.342642320085929e-4
allele num: 14896
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Latino
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European (Non-Finnish)
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allele num: 57714
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African
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East Asian
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Other
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European (Finnish)
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MQ
type: SiteQuality
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DP
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VQSLOD
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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African
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Other
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European (Non-Finnish)
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Latino
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

South Asian
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African
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allele num: 5748
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East Asian
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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BaseQRankSum
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SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

FS
type: SiteQuality
SIO_000300: 6.3201e1

MQ
type: SiteQuality
SIO_000300: 2.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 5.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

DP
type: SiteQuality
SIO_000300: 1.196899e6

VQSLOD
type: SiteQuality
SIO_000300: -3.739e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

GenotypeQuality
all individuals: 353
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 3.436426116838488e-3
allele num: 5820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQ
type: SiteQuality
SIO_000300: 2.827e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.769e0

FS
type: SiteQuality
SIO_000300: 5.4993e1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 4.83e0

DP
type: SiteQuality
SIO_000300: 1.201529e6

GenotypeQuality
all individuals: 991
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11044
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.436898542755018e-5
allele num: 58192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.256e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 1.207482e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

QD
type: SiteQuality
SIO_000300: 5.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 1557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15020
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 3.39328130302002e-3
allele num: 5894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.0509e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

QD
type: SiteQuality
SIO_000300: 4.54e0

MQ
type: SiteQuality
SIO_000300: 2.899e1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.211842e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 1583
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 1800
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variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.421142661648991e-5
allele num: 58460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.161e0

DP
type: SiteQuality
SIO_000300: 1.219738e6

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

FS
type: SiteQuality
SIO_000300: 1.0086e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

MQ
type: SiteQuality
SIO_000300: 3.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.735e0

QD
type: SiteQuality
SIO_000300: 5.2e0

GenotypeQuality
all individuals: 1623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
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variant carriers: 1

GenotypeQuality
all individuals: 772
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variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 2.75e1
variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 2.770083102493075e-3
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.635700066357e-5
allele num: 15070
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.902951079421667e-5
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.86368843069874e-4
allele num: 6984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.584596476853748e-4
allele num: 58584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.636125654450262e-4
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.148689299527288e-4
allele num: 4654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.176e1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 1.305e0

DP
type: SiteQuality
SIO_000300: 1.222906e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.285e0

QD
type: SiteQuality
SIO_000300: 7.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
all individuals: 30746
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 399
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 5603
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 892
bin: 5.25e1
variant carriers: 4

Latino
type: Population
allele count: 3
allele frequency: 2.97029702970297e-4
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.082465809348847e-4
allele num: 58788
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 4.721030042918455e-3
allele num: 6990
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.617231173955935e-3
allele num: 6082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.324678765399391e-4
allele num: 15098
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.655e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 3.085e1

QD
type: SiteQuality
SIO_000300: 4.19e0

VQSLOD
type: SiteQuality
SIO_000300: -4.082e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

DP
type: SiteQuality
SIO_000300: 1.227014e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 1072
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
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variant carriers: 0

GenotypeQuality
all individuals: 30746
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.402054841124039e-5
allele num: 58788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.082e0

QD
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 3.085e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 1.227014e6

FS
type: SiteQuality
SIO_000300: 5.655e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 590
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 3.049e1

DP
type: SiteQuality
SIO_000300: 1.251207e6

QD
type: SiteQuality
SIO_000300: 6.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -4.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.669281874937402e-5
allele num: 59906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7190
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.942907592701589e-4
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.551e1

QD
type: SiteQuality
SIO_000300: 7.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.261139e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

MQ
type: SiteQuality
SIO_000300: 3.483e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -4.994e0

GenotypeQuality
all individuals: 1966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
all individuals: 9556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
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GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.665389867768044e-5
allele num: 60046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

VQSLOD
type: SiteQuality
SIO_000300: -4.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.776e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 8.226000000000001e0

MQ
type: SiteQuality
SIO_000300: 3.588e1

DP
type: SiteQuality
SIO_000300: 1.265427e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31687
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 384
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.384657989476599e-4
allele num: 7222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.877e1

VQSLOD
type: SiteQuality
SIO_000300: -2.112e0

DP
type: SiteQuality
SIO_000300: 1.267787e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 3.507e1

FS
type: SiteQuality
SIO_000300: 9.442e0

GenotypeQuality
all individuals: 764
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variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.665445340083938e-5
allele num: 60044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15358
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.54e0

DP
type: SiteQuality
SIO_000300: 1.272967e6

QD
type: SiteQuality
SIO_000300: 1.999e1

MQ
type: SiteQuality
SIO_000300: 3.742e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.78e0

GenotypeQuality
all individuals: 1962
bin: 5.25e1
variant carriers: 22

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1377
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 1

South Asian
type: Population
allele count: 36
allele frequency: 2.554278416347382e-3
allele num: 14094
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 2.303136652774731e-3
allele num: 9118
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 2.808002808002808e-3
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 2.147898128260202e-3
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.501501501501501e-3
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 72
allele frequency: 1.306620209059234e-3
allele num: 55104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 7.055503292568204e-4
allele num: 4252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.374e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.944e-1

FS
type: SiteQuality
SIO_000300: 4.043e0

DP
type: SiteQuality
SIO_000300: 1.167183e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.37e1

GenotypeQuality
all individuals: 1450
bin: 1.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1307
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 3

South Asian
type: Population
allele count: 1
allele frequency: 7.095217823187172e-5
allele num: 14094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.053001053001053e-3
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.629500580720093e-5
allele num: 55104
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.167183e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.944e-1

FS
type: SiteQuality
SIO_000300: 4.043e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 3.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 29

GenotypeQuality
all individuals: 2104
bin: 4.75e1
variant carriers: 45

GenotypeQuality
all individuals: 4694
bin: 6.75e1
variant carriers: 39

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 31

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 38

East Asian
type: Population
allele count: 6
allele frequency: 9.205277692543725e-4
allele num: 6518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.587017873941675e-3
allele num: 4252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 138
allele frequency: 2.504355400696864e-3
allele num: 55104
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.006006006006006e-3
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.773804455796793e-3
allele num: 14094
num of homozygotes: 0

African
type: Population
allele count: 704
allele frequency: 1.235521235521236e-1
allele num: 5698
num of homozygotes: 56

Latino
type: Population
allele count: 70
allele frequency: 7.677122175915771e-3
allele num: 9118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.374e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.944e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 3.37e1

FS
type: SiteQuality
SIO_000300: 4.043e0

DP
type: SiteQuality
SIO_000300: 1.167183e6

GenotypeQuality
all individuals: 2104
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 7.02000702000702e-4
allele num: 5698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.351834430856068e-4
allele num: 4252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.096731739416539e-4
allele num: 9118
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.547608911593586e-4
allele num: 14094
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.629500580720093e-4
allele num: 55104
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.167183e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.944e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 3.37e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 4.043e0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

African
type: Population
allele count: 3
allele frequency: 5.265005265005265e-4
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.501501501501501e-3
allele num: 666
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 4.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.944e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 3.37e1

DP
type: SiteQuality
SIO_000300: 1.167183e6

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55104
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.095217823187172e-5
allele num: 14094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.944e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 3.37e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.167183e6

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

FS
type: SiteQuality
SIO_000300: 4.043e0

QD
type: SiteQuality
SIO_000300: 1.374e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 1610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.49063670411985e-5
allele num: 13350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.378e0

FS
type: SiteQuality
SIO_000300: 3.107e0

DP
type: SiteQuality
SIO_000300: 1.023234e6

VQSLOD
type: SiteQuality
SIO_000300: -3.823e0

MQ
type: SiteQuality
SIO_000300: 3.477e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 1133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 2.917152858809801e-4
allele num: 3428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.153946510110893e-5
allele num: 49056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.923976608187135e-4
allele num: 3420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.406469760900141e-4
allele num: 7110
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.589331952356292e-4
allele num: 3862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.250580046403712e-5
allele num: 13792
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 9.73041e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 3.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.45e-1

FS
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 463
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.280544859851778e-5
allele num: 48306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 1.008e1

VQSLOD
type: SiteQuality
SIO_000300: -2.923e0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.516e0

MQ
type: SiteQuality
SIO_000300: 3.834e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

DP
type: SiteQuality
SIO_000300: 9.0154e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

GenotypeQuality
all individuals: 1227
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 427
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.529519730804527e-4
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 6.864988558352402e-3
allele num: 3496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3144
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

VQSLOD
type: SiteQuality
SIO_000300: -5.507e0

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.217e0

MQ
type: SiteQuality
SIO_000300: 3.389e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

FS
type: SiteQuality
SIO_000300: 1.6885e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 8.81963e5

GenotypeQuality
all individuals: 2918
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.9120559114735e-4
allele num: 3434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.467e1

MQRankSum
type: SiteQuality
SIO_000300: -2.011e0

DP
type: SiteQuality
SIO_000300: 8.74536e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.376e0

QD
type: SiteQuality
SIO_000300: 1.063e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 8098
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1495
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1065
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3024
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 5

Other
type: Population
allele count: 2
allele frequency: 3.952569169960474e-3
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 2.127659574468085e-3
allele num: 2820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 64
allele frequency: 1.523591867828405e-3
allele num: 42006
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 8.675078864353313e-4
allele num: 12680
num of homozygotes: 0

African
type: Population
allele count: 43
allele frequency: 1.405228758169935e-2
allele num: 3060
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.62e0

DP
type: SiteQuality
SIO_000300: 8.23565e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 3.646e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.6e-2

FS
type: SiteQuality
SIO_000300: 1.981e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 947
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1701
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.858024691358024e-4
allele num: 2592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.380612293481883e-5
allele num: 42006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.886435331230284e-5
allele num: 12680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.981e0

DP
type: SiteQuality
SIO_000300: 8.23565e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 3.646e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 7.62e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3024
bin: 3.25e1
variant carriers: 13

East Asian
type: Population
allele count: 1
allele frequency: 3.858024691358024e-4
allele num: 2592
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 2.287581699346405e-2
allele num: 3060
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 2
allele frequency: 7.092198581560284e-4
allele num: 2820
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.309148264984228e-4
allele num: 12680
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.278772378516624e-3
allele num: 5474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 7.141836880445651e-4
allele num: 42006
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.976284584980237e-3
allele num: 506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.23565e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.981e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 3.646e1

QD
type: SiteQuality
SIO_000300: 7.62e0

GenotypeQuality
all individuals: 3019
bin: 2.75e1
variant carriers: 38

GenotypeQuality
all individuals: 8098
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1065
bin: 5.25e1
variant carriers: 9

Latino
type: Population
allele count: 4
allele frequency: 7.307270734380709e-4
allele num: 5474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 9.284387944579346e-4
allele num: 42006
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.577287066246057e-4
allele num: 12680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 2.127659574468085e-3
allele num: 2820
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.858024691358024e-4
allele num: 2592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.23565e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 3.646e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 7.62e0

FS
type: SiteQuality
SIO_000300: 1.981e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 206

GenotypeQuality
all individuals: 11662
bin: 9.75e1
variant carriers: 11655

GenotypeQuality
all individuals: 5222
bin: 6.25e1
variant carriers: 109

GenotypeQuality
all individuals: 153
bin: 8.25e1
variant carriers: 132

GenotypeQuality
all individuals: 179
bin: 7.75e1
variant carriers: 112

Other
type: Population
allele count: 126
allele frequency: 2.850678733031674e-1
allele num: 442
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 7036
allele frequency: 1.932648464538812e-1
allele num: 36406
num of homozygotes: 188

European (Finnish)
type: Population
allele count: 888
allele frequency: 3.690773067331671e-1
allele num: 2406
num of homozygotes: 43

East Asian
type: Population
allele count: 156
allele frequency: 8.657047724750278e-2
allele num: 1802
num of homozygotes: 2

Latino
type: Population
allele count: 377
allele frequency: 8.989031950405341e-2
allele num: 4194
num of homozygotes: 10

African
type: Population
allele count: 152
allele frequency: 6.540447504302926e-2
allele num: 2324
num of homozygotes: 4

South Asian
type: Population
allele count: 3440
allele frequency: 2.974234826214767e-1
allele num: 11566
num of homozygotes: 155

DP
type: SiteQuality
SIO_000300: 8.81974e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.83e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.807e1

FS
type: SiteQuality
SIO_000300: 2.179e0

MQ
type: SiteQuality
SIO_000300: 3.783e1

VQSLOD
type: SiteQuality
SIO_000300: -4.725e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 132

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 210

GenotypeQuality
all individuals: 667
bin: 1.25e1
variant carriers: 197

GenotypeQuality
all individuals: 5589
bin: 6.25e1
variant carriers: 113

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 74

African
type: Population
allele count: 148
allele frequency: 5.606060606060606e-2
allele num: 2640
num of homozygotes: 4

South Asian
type: Population
allele count: 3420
allele frequency: 2.811112937695216e-1
allele num: 12166
num of homozygotes: 169

Other
type: Population
allele count: 126
allele frequency: 2.727272727272727e-1
allele num: 462
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 872
allele frequency: 3.544715447154472e-1
allele num: 2460
num of homozygotes: 43

East Asian
type: Population
allele count: 149
allele frequency: 7.028301886792453e-2
allele num: 2120
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 6952
allele frequency: 1.787973869656911e-1
allele num: 38882
num of homozygotes: 194

Latino
type: Population
allele count: 367
allele frequency: 7.716568544995794e-2
allele num: 4756
num of homozygotes: 10

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 3.066e0

QD
type: SiteQuality
SIO_000300: 1.882e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.13574e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.95e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

MQ
type: SiteQuality
SIO_000300: 3.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2190
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.955449482895784e-4
allele num: 2514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7531e1

VQSLOD
type: SiteQuality
SIO_000300: -5.214e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 3.593e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.61292e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

QD
type: SiteQuality
SIO_000300: 1.519e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 1745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.081002542680712e-5
allele num: 11012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

DP
type: SiteQuality
SIO_000300: 5.99443e5

MQ
type: SiteQuality
SIO_000300: 4.692e1

QD
type: SiteQuality
SIO_000300: 1.154e1

FS
type: SiteQuality
SIO_000300: 2.858e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeQuality
all individuals: 184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.427004797806717e-5
allele num: 29180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.61825e5

VQSLOD
type: SiteQuality
SIO_000300: -2.091e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQ
type: SiteQuality
SIO_000300: 4.115e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32476
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.453e0

FS
type: SiteQuality
SIO_000300: 6.069e0

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 4.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

QD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 3.70557e5

GenotypeQuality
all individuals: 94
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3467
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.786550250789523e-4
allele num: 10766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.987e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 3.849e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 3.58412e5

QD
type: SiteQuality
SIO_000300: 6.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.726e0

GenotypeQuality
all individuals: 92
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.727768685215493e-4
allele num: 7332
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.65e-1

MQ
type: SiteQuality
SIO_000300: 3.542e1

DP
type: SiteQuality
SIO_000300: 3.4832e5

BaseQRankSum
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SIO_000300: -1.156e0

FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -7.290000000000001e-2

VQSLOD
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ClippingRankSum
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.08e0

QD
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SIO_000300: 1.315e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 380
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.39463601532567e-4
allele num: 4176
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 846
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Other
type: Population
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allele frequency: 0.0e0
allele num: 80
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.68869e5

MQ
type: SiteQuality
SIO_000300: 3.881e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.306e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.686727565824826e-4
allele num: 3722
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.32e-2

FS
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SIO_000300: 0.0e0

MQRankSum
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BaseQRankSum
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SIO_000300: -1.01e-1

MQ
type: SiteQuality
SIO_000300: 2.863e1

ReadPosRankSum
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SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -3.632e0

DP
type: SiteQuality
SIO_000300: 1.43611e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 1066
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African
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allele frequency: 0.0e0
allele num: 588
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Other
type: Population
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allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 232
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.14070351758794e-4
allele num: 3184
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
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SIO_000300: 1.18937e5

VQSLOD
type: SiteQuality
SIO_000300: -3.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.261578604044357e-4
allele num: 3066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
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Other
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allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 1002
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African
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allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.039e1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.063e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.74e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

DP
type: SiteQuality
SIO_000300: 1.13413e5

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.475247524752475e-3
allele num: 404
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.6279e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.762e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.111111111111111e-2
allele num: 180
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 84
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.46e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.73e-2

MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 34
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East Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Other
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allele frequency: 0.0e0
allele num: 4
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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FS
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QD
type: SiteQuality
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VQSLOD
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Latino
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African
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European (Non-Finnish)
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allele frequency: 2.548543689320388e-2
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European (Finnish)
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South Asian
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Other
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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Latino
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Other
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European (Finnish)
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African
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allele frequency: 5.58659217877095e-3
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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East Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
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SIO_000300: 1.104e1

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.4962e4

MQ
type: SiteQuality
SIO_000300: 3.434e1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.2e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.5828e4

QD
type: SiteQuality
SIO_000300: 2.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.99e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: NaN
allele num: 0
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South Asian
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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African
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.584e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.16e2

MQ
type: SiteQuality
SIO_000300: 2.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.688e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.811989100817438e-4
allele num: 1468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 294
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.684e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

DP
type: SiteQuality
SIO_000300: 4.1695e4

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 2.831e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.5625e-2
allele num: 64
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.053e1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.565e0

DP
type: SiteQuality
SIO_000300: 4.2244e4

QD
type: SiteQuality
SIO_000300: 4.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.785515320334262e-3
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.205e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.53e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

DP
type: SiteQuality
SIO_000300: 4.5024e4

VQSLOD
type: SiteQuality
SIO_000300: -3.932e0

QD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 5.882352941176471e-2
allele num: 68
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.285714285714286e-3
allele num: 1750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -4.507e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 4.9691e4

GenotypeQuality
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bin: 7.5e0
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 944
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.101928374655647e-2
allele num: 2178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
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MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

East Asian
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allele count: 5
allele frequency: 3.968253968253968e-2
allele num: 126
num of homozygotes: 0

Latino
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allele count: 8
allele frequency: 8.333333333333333e-2
allele num: 96
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African
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allele count: 27
allele frequency: 7.714285714285714e-2
allele num: 350
num of homozygotes: 0

South Asian
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allele count: 48
allele frequency: 1.993355481727575e-2
allele num: 2408
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.5e-2
allele num: 40
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European (Non-Finnish)
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allele count: 99
allele frequency: 9.555984555984556e-2
allele num: 1036
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 2.973e1

QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Finnish)
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 1334
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 4.971590909090909e-3
allele num: 1408
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African
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East Asian
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South Asian
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allele frequency: 1.384274640088594e-3
allele num: 3612
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2065
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 5.165289256198347e-4
allele num: 3872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.324503311258278e-3
allele num: 1510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.761904761904762e-3
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

VQSLOD
type: SiteQuality
SIO_000300: -3.297e0

DP
type: SiteQuality
SIO_000300: 8.4108e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 2.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

GenotypeQuality
all individuals: 2065
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1231
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 31
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 37
allele frequency: 8.80952380952381e-2
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.771929824561403e-3
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 4.132231404958678e-3
allele num: 3872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.52e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

VQSLOD
type: SiteQuality
SIO_000300: -3.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.4108e4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

MQ
type: SiteQuality
SIO_000300: 2.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1