X-108781371-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781371
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781371
    reference: chr 0
allele count: 2
allele frequency: 2.322934330646473e-5
allele num: 86098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+11T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+11T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+11T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+11T>C
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2696
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

X-108781373-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781373
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781373
    reference: chr 0
allele count: 1
allele frequency: 1.161912507988149e-5
allele num: 86065
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+13G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+13G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+13G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+13G>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

X-108781375-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781375
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781375
    reference: chr 0
allele count: 1
allele frequency: 1.164225673504552e-5
allele num: 85894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+15C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+15C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+15C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+15C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-108781385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781385
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781385
    reference: chr 0
allele count: 1
allele frequency: 1.171001323231495e-5
allele num: 85397
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+25C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+25C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+25C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+25C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-108781394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781394
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781394
    reference: chr 0
allele count: 1
allele frequency: 1.175834254403499e-5
allele num: 85046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+34C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+34C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+34C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+34C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS

X-108781397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781397
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781397
    reference: chr 0
allele count: 1
allele frequency: 1.177551164598102e-5
allele num: 84922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+37C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+37C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+37C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+37C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
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X-108781399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781399
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781399
    reference: chr 0
allele count: 1
allele frequency: 1.179843552744906e-5
allele num: 84757
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+39A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+39A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+39A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
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  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+39A>G
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-108781406-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108781406
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108781406
    reference: chr 0
allele count: 1
allele frequency: 1.186661920018987e-5
allele num: 84270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.18+46A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.267+46A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.18+46A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.102+46A>G
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-108784666-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784666
    reference: chr 0
allele count: 1
allele frequency: 1.525017918960548e-5
allele num: 65573
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.19-38G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.103-38G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.268-38G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.19-38G>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11978
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-108784692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784692
    reference: chr 0
allele count: 84
allele frequency: 1.108735249861408e-3
allele num: 75762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.19-12C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.103-12C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.19-12C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.268-12C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 332
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 111
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
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  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 686
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 179
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31064
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 28974
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1862
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
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genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 6.75e1
  variant carriers: 2
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

X-108784704-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784704
    reference: chr 0
allele count: 2
allele frequency: 2.431285785487655e-5
allele num: 82261
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.19G>T
  hgvsp: ENSP00000361175.1:p.Ala7Ser
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.268G>T
  hgvsp: ENSP00000218004.1:p.Ala90Ser
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.19G>T
  hgvsp: ENSP00000361179.1:p.Ala7Ser
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.103G>T
  hgvsp: ENSP00000361178.1:p.Ala35Ser
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala90Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-108784718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784718
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784718
    reference: chr 0
allele count: 1
allele frequency: 1.171714804616556e-5
allele num: 85345
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.33G>A
  hgvsp: ENST00000372107.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.282G>A
  hgvsp: ENST00000218004.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.117G>A
  hgvsp: ENST00000372106.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.33G>A
  hgvsp: ENST00000372103.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu94Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-108784733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784733
    reference: chr 0
allele count: 1
allele frequency: 1.155681910111061e-5
allele num: 86529
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.132C>T
  hgvsp: ENST00000372106.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.297C>T
  hgvsp: ENST00000218004.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.48C>T
  hgvsp: ENST00000372103.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.48C>T
  hgvsp: ENST00000372107.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4962
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala99Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-108784758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784758
    reference: chr 0
allele count: 1
allele frequency: 1.146250042984377e-5
allele num: 87241
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.322G>A
  hgvsp: ENSP00000218004.1:p.Val108Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.73G>A
  hgvsp: ENSP00000361175.1:p.Val25Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.73G>A
  hgvsp: ENSP00000361179.1:p.Val25Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.157G>A
  hgvsp: ENSP00000361178.1:p.Val53Ile
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5907
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val108Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

X-108784775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784775
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784775
    reference: chr 0
allele count: 3
allele frequency: 3.43112026076514e-5
allele num: 87435
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.339C>T
  hgvsp: ENST00000218004.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.90C>T
  hgvsp: ENST00000372103.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.174C>T
  hgvsp: ENST00000372106.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.90C>T
  hgvsp: ENST00000372107.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4976
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala113Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-108784838-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784838
    reference: chr 0
allele count: 2
allele frequency: 2.314466573316515e-5
allele num: 86413
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.153A>G
  hgvsp: ENST00000372103.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.237A>G
  hgvsp: ENST00000372106.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.153A>G
  hgvsp: ENST00000372107.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.402A>G
  hgvsp: ENST00000218004.1:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln134Gln
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-108784876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784876
    reference: chr 0
allele count: 5
allele frequency: 5.891224432085965e-5
allele num: 84872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.247+28C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.412+28C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.163+28C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.163+28C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-108784886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784886
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784886
    reference: chr 0
allele count: 1
allele frequency: 1.182620213344687e-5
allele num: 84558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.247+38C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.163+38C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.163+38C>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.412+38C>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

X-108784896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108784896
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108784896
    reference: chr 0
allele count: 1
allele frequency: 1.18838237391263e-5
allele num: 84148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.247+48G>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.163+48G>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.412+48G>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.163+48G>A
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
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X-108785691-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785691
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785691
    reference: chr 0
allele count: 8
allele frequency: 1.339966165854312e-4
allele num: 59703
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-45A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-45A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-45A>G
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-45A>G
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-108785707-G-GTTCTCTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785715
    reference: chr 0
allele count: 5
allele frequency: 7.967746561917359e-5
allele num: 62753
alternate allele: GTTCTCTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 14882
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 17672
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

X-108785712-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785713
    reference: chr 0
allele count: 1038
allele frequency: 2.518744995268254e-2
allele num: 41211
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-14dupT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-14dupT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-14dupT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-14dupT
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 7.5e0
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 477
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 701
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genotype depth: GenotypeDepth
  all individuals: 74
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 336
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 184
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 8542
  bin: 2.25e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 20154
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 116
num of homozygotes: 3
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

X-108785712-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785714
    reference: chr 0
allele count: 4
allele frequency: 9.706146417218704e-5
allele num: 41211
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-15_248-14dupTT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-15_164-14dupTT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-15_413-14dupTT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-15_164-14dupTT
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

X-108785712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785712
    reference: chr 0
allele count: 4
allele frequency: 9.706146417218704e-5
allele num: 41211
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1631
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 5836
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8542
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 563
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3923
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 4.428697962798937e-5
  allele num: 22580
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3001
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5055
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-108785712-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785711
    reference: chr 0
allele count: 858
allele frequency: 2.081968406493412e-2
allele num: 41211
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-14delT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-14delT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-14delT
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-14delT
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 11238
  bin: 2.25e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 67
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  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 1.75e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 1.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 7.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 2.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 473
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  variant carriers: 59
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 203
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 34
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: CT
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-108785714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785714
    reference: chr 0
allele count: 1
allele frequency: 1.788588803434091e-5
allele num: 55910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-22T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-22T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-22T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-22T>C
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-108785717-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785717
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785717
    reference: chr 0
allele count: 1
allele frequency: 1.334863977360707e-5
allele num: 74914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-19T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-19T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-19T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
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  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-19T>C
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-108785725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785725
    reference: chr 0
allele count: 2
allele frequency: 2.596761837988029e-5
allele num: 77019
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-11T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-11T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-11T>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-11T>C
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
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X-108785726-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785726
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785726
    reference: chr 0
allele count: 1
allele frequency: 1.292607577265618e-5
allele num: 77363
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-10G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-10G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-10G>T
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-10G>T
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 9043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5602
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-108785730-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785730
    reference: chr 0
allele count: 1
allele frequency: 1.271568988975497e-5
allele num: 78643
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.164-6A>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.413-6A>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.164-6A>C
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.248-6A>C
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 261
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
hgvs: c.413-6A>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-108785748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785748
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785748
    reference: chr 0
allele count: 7
allele frequency: 8.460032389838292e-5
allele num: 82742
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.425A>G
  hgvsp: ENSP00000218004.1:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.176A>G
  hgvsp: ENSP00000361179.1:p.Gln59Arg
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.176A>G
  hgvsp: ENSP00000361175.1:p.Gln59Arg
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.260A>G
  hgvsp: ENSP00000361178.1:p.Gln87Arg
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
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  variant carriers: 0
hgvs: p.Gln142Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-108785757-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785757
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785757
    reference: chr 0
allele count: 1
allele frequency: 1.189484953015344e-5
allele num: 84070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.185C>A
  hgvsp: ENSP00000361179.1:p.Thr62Asn
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.185C>A
  hgvsp: ENSP00000361175.1:p.Thr62Asn
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.269C>A
  hgvsp: ENSP00000361178.1:p.Thr90Asn
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.434C>A
  hgvsp: ENSP00000218004.1:p.Thr145Asn
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Thr145Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

X-108785784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785784
    reference: chr 0
allele count: 1
allele frequency: 1.155802126675913e-5
allele num: 86520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.296C>T
  hgvsp: ENSP00000361178.1:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.212C>T
  hgvsp: ENSP00000361179.1:p.Thr71Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.461C>T
  hgvsp: ENSP00000218004.1:p.Thr154Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.212C>T
  hgvsp: ENSP00000361175.1:p.Thr71Ile
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr154Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-108785795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785795
    reference: chr 0
allele count: 1
allele frequency: 1.148738684923954e-5
allele num: 87052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.307G>C
  hgvsp: ENSP00000361178.1:p.Asp103His
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.223G>C
  hgvsp: ENSP00000361175.1:p.Asp75His
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.223G>C
  hgvsp: ENSP00000361179.1:p.Asp75His
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.472G>C
  hgvsp: ENSP00000218004.1:p.Asp158His
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 113
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp158His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

X-108785831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785831
    reference: chr 0
allele count: 1
allele frequency: 1.141695875052804e-5
allele num: 87589
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.508C>G
  hgvsp: ENSP00000218004.1:p.Leu170Val
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.259C>G
  hgvsp: ENSP00000361175.1:p.Leu87Val
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.343C>G
  hgvsp: ENSP00000361178.1:p.Leu115Val
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.259C>G
  hgvsp: ENSP00000361179.1:p.Leu87Val
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30
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  variant carriers: 0
hgvs: p.Leu170Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-108785849-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785849
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785849
    reference: chr 0
allele count: 1
allele frequency: 1.142491545562563e-5
allele num: 87528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.277A>G
  hgvsp: ENSP00000361179.1:p.Thr93Ala
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.277A>G
  hgvsp: ENSP00000361175.1:p.Thr93Ala
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.361A>G
  hgvsp: ENSP00000361178.1:p.Thr121Ala
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.526A>G
  hgvsp: ENSP00000218004.1:p.Thr176Ala
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3430
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hgvs: p.Thr176Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-108785859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785859
    reference: chr 0
allele count: 5
allele frequency: 5.718926214413981e-5
allele num: 87429
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.371A>G
  hgvsp: ENSP00000361178.1:p.Asn124Ser
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.536A>G
  hgvsp: ENSP00000218004.1:p.Asn179Ser
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.287A>G
  hgvsp: ENSP00000361175.1:p.Asn96Ser
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.287A>G
  hgvsp: ENSP00000361179.1:p.Asn96Ser
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4348
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5868
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn179Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-108785860-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785860
    reference: chr 0
allele count: 1
allele frequency: 1.144125487683489e-5
allele num: 87403
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.288T>C
  hgvsp: ENST00000372103.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.372T>C
  hgvsp: ENST00000372106.1:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.537T>C
  hgvsp: ENST00000218004.1:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.288T>C
  hgvsp: ENST00000372107.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7675
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn179Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-108785862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785862
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785862
    reference: chr 0
allele count: 1
allele frequency: 1.144741059572325e-5
allele num: 87356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.290C>T
  hgvsp: ENSP00000361179.1:p.Thr97Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.290C>T
  hgvsp: ENSP00000361175.1:p.Thr97Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.374C>T
  hgvsp: ENSP00000361178.1:p.Thr125Ile
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.539C>T
  hgvsp: ENSP00000218004.1:p.Thr180Ile
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr180Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-108785866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785866
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785866
    reference: chr 0
allele count: 1
allele frequency: 1.146315741207758e-5
allele num: 87236
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.543G>A
  hgvsp: ENST00000218004.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.378G>A
  hgvsp: ENST00000372106.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.294G>A
  hgvsp: ENST00000372103.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.294G>A
  hgvsp: ENST00000372107.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
hgvs: p.Val181Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-108785943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785943
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785943
    reference: chr 0
allele count: 1
allele frequency: 1.191809882487546e-5
allele num: 83906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 27703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

X-108785955-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785955
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785955
    reference: chr 0
allele count: 1
allele frequency: 1.201735305781548e-5
allele num: 83213
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

X-108785968-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108785968
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108785968
    reference: chr 0
allele count: 1
allele frequency: 1.212709192335678e-5
allele num: 82460
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000218004
  ensembl transcript: ENST00000218004
  gene symbol: NXT2
  hgvsc: ENST00000218004.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361179
  ensembl transcript: ENST00000372107
  gene symbol: NXT2
  hgvsc: ENST00000372107.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361175
  ensembl transcript: ENST00000372103
  gene symbol: NXT2
  hgvsc: ENST00000372103.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/18151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101888
  ensembl protein: ENSP00000361178
  ensembl transcript: ENST00000372106
  gene symbol: NXT2
  hgvsc: ENST00000372106.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/18151
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

X-108867771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867771
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-221C>T
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.*50C>T
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26938
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 179
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

X-108867805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867805
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867805
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2792
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.*16T>C
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-255T>C
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

X-108867806-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867806
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2776
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.*15A>T
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-256A>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-108867815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867815
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867815
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2824
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.*6C>T
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-265C>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 84
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

X-108867817-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867817
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867817
    reference: chr 0
allele count: 1
allele frequency: 3.570153516601214e-4
allele num: 2801
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-267C>A
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.*4C>A
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-108867826-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867826
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-276G>C
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.424G>C
  hgvsp: ENSP00000361173.2:p.Val142Leu
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val142Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 81
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-108867835-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867835
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-285G>T
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.415G>T
  hgvsp: ENSP00000361173.2:p.Ala139Ser
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ala139Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele num: 1488
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population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
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X-108867882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867882
    reference: chr 0
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    type: ExactPosition
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allele count: 2
allele frequency: 4.46927374301676e-4
allele num: 4475
alternate allele: T
annotation: Annotation
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  gene symbol: KCNE1L
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  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000068366
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  gene symbol: ACSL4
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  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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population: East Asian
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population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
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X-108867883-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867883
    reference: chr 0
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    type: ExactPosition
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allele count: 0
allele frequency: 0.0e0
allele num: 4667
alternate allele: A
annotation: Annotation
  canonical: false
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  gene symbol: ACSL4
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  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.367G>T
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  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
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population: South Asian
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population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
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site quality: DP
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site quality: InbreedingCoeff
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X-108867892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867892
    reference: chr 0
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    type: ExactPosition
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allele count: 1
allele frequency: 1.751620248730075e-4
allele num: 5709
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000068366
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  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-342C>T
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
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  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.358C>T
  hgvsp: ENSP00000361173.2:p.Gln120Ter
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
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population: South Asian
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population: African
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reference allele: G
site quality: MQ
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X-108867894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867894
    reference: chr 0
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    type: ExactPosition
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allele num: 6050
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annotation: Annotation
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  gene symbol: ACSL4
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  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
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  ensembl protein: ENSP00000361173
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  gene symbol: KCNE1L
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  hgvsp: ENSP00000361173.2:p.Ser119Phe
  variant of: http://identifiers.org/hgnc/6241
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser119Phe
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2523
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-108867904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867904
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867904
    reference: chr 0
allele count: 1
allele frequency: 1.246727340730582e-4
allele num: 8021
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.346G>A
  hgvsp: ENSP00000361173.2:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-354G>A
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala116Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3560
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
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X-108867911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867911
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867911
    reference: chr 0
allele count: 1
allele frequency: 1.017087062652563e-4
allele num: 9832
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.339C>T
  hgvsp: ENST00000372101.2:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-361C>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala113Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 767
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-108867915-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867915
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11836
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.335A>C
  hgvsp: ENSP00000361173.2:p.Asp112Ala
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-365A>C
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp112Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 917
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

X-108867916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867916
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867916
    reference: chr 0
allele count: 19
allele frequency: 1.551020408163265e-3
allele num: 12250
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.334G>A
  hgvsp: ENSP00000361173.2:p.Asp112Asn
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-366G>A
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp112Asn
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3677
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-108867917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867917
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867917
    reference: chr 0
allele count: 17
allele frequency: 1.329787234042553e-3
allele num: 12784
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.333C>T
  hgvsp: ENST00000372101.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-367C>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala111Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6102
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
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site quality: MQ
site quality: DP

X-108867920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867920
    reference: chr 0
allele count: 1
allele frequency: 6.926646810279144e-5
allele num: 14437
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.330C>T
  hgvsp: ENST00000372101.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-370C>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr110Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 381
  num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-108867925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867925
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867925
    reference: chr 0
allele count: 1
allele frequency: 5.831583858175881e-5
allele num: 17148
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.325C>T
  hgvsp: ENST00000372101.2:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-375C>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu109Leu
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1383
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-108867932-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867932
    reference: chr 0
allele count: 3
allele frequency: 1.410901566100738e-4
allele num: 21263
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.318A>G
  hgvsp: ENST00000372101.2:c.318A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-382A>G
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly106Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10863
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-108867933-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867933
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 21942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-383G>T
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
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  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.317G>T
  hgvsp: ENSP00000361173.2:p.Gly106Val
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly106Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4912
  num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

X-108867933-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867933
    reference: chr 0
allele count: 1
allele frequency: 4.557469692826542e-5
allele num: 21942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-383G>C
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.317G>C
  hgvsp: ENSP00000361173.2:p.Gly106Ala
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly106Ala
num of homozygotes: 0
population: East Asian
  type: Population
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population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
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site quality: VQSLOD
site quality: DP

X-108867937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867937
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867937
    reference: chr 0
allele count: 1
allele frequency: 3.937938095613137e-5
allele num: 25394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-387C>T
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.313C>T
  hgvsp: ENSP00000361173.2:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro105Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 829
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population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
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X-108867941-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867941
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867941
    reference: chr 0
allele count: 1
allele frequency: 3.469090404495941e-5
allele num: 28826
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.309G>T
  hgvsp: ENSP00000361173.2:p.Trp103Cys
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-391G>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Trp103Cys
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 977
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS

X-108867945-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867945
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867945
    reference: chr 0
allele count: 1
allele frequency: 3.144357450554979e-5
allele num: 31803
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.305A>C
  hgvsp: ENSP00000361173.2:p.Glu102Ala
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-395A>C
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4050
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu102Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2682
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-108867947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867947
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867947
    reference: chr 0
allele count: 1
allele frequency: 2.982759649227465e-5
allele num: 33526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-397C>T
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.303C>T
  hgvsp: ENST00000372101.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His101His
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2297
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-108867948-TGCTCG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867948
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867943
    reference: chr 0
allele count: 1
allele frequency: 2.898214699744957e-5
allele num: 34504
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.297_301delCGAGC
  hgvsp: ENSP00000361173.2:p.Glu100ArgfsTer39
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-403_387-399delCGAGC
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu100ArgfsTer39
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 248
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: TGCTCG
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

X-108867950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867950
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867950
    reference: chr 0
allele count: 1
allele frequency: 2.770006371014653e-5
allele num: 36101
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-400G>A
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.300G>A
  hgvsp: ENST00000372101.2:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu100Glu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 255
  num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

X-108867952-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867952
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867952
    reference: chr 0
allele count: 2
allele frequency: 5.35862604828122e-5
allele num: 37323
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-402G>C
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.298G>C
  hgvsp: ENSP00000361173.2:p.Glu100Gln
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu100Gln
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2674
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-108867961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867961
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867961
    reference: chr 0
allele count: 1
allele frequency: 2.158801433444152e-5
allele num: 46322
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.289G>A
  hgvsp: ENSP00000361173.2:p.Ala97Thr
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-411G>A
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala97Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6688
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-108867964-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867964
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 48286
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.286C>G
  hgvsp: ENSP00000361173.2:p.Gln96Glu
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-414C>G
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gln96Glu
num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 5628
  num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-108867965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867965
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867965
    reference: chr 0
allele count: 3
allele frequency: 6.136224176723256e-5
allele num: 48890
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.285C>T
  hgvsp: ENST00000372101.2:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-415C>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
  type: Population
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  allele num: 4478
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
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site quality: DP

X-108867969-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867969
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867969
    reference: chr 0
allele count: 2
allele frequency: 3.898711475857229e-5
allele num: 51299
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-419C>G
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.281C>G
  hgvsp: ENSP00000361173.2:p.Pro94Arg
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro94Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5998
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-108867973-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867973
    reference: chr 0
allele count: 3
allele frequency: 5.527406725011515e-5
allele num: 54275
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.277G>T
  hgvsp: ENSP00000361173.2:p.Glu93Ter
  variant of: http://identifiers.org/hgnc/6241
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-423G>T
  variant of: http://identifiers.org/hgnc/3571
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21744
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23364
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu93Ter
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 7.228915662650603e-4
  allele num: 4150
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-108867974-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24108867974
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24108867974
    reference: chr 0
allele count: 3
allele frequency: 5.378368203087183e-5
allele num: 55779
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068366
  ensembl transcript: ENST00000439581
  gene symbol: ACSL4
  hgvsc: ENST00000439581.1:n.387-424C>A
  variant of: http://identifiers.org/hgnc/3571
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176076
  ensembl protein: ENSP00000361173
  ensembl transcript: ENST00000372101
  gene symbol: KCNE1L
  hgvsc: ENST00000372101.2:c.276C>A
  hgvsp: ENSP00000361173.2:p.Asp92Glu
  variant of: http://identifiers.org/hgnc/6241
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22721
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp92Glu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 18994
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.202475257926919e-5
allele num: 47591
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.299663e6

QD
type: SiteQuality
SIO_000300: 2.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

MQ
type: SiteQuality
SIO_000300: 5.461e1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -4.302e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 6.0e0

GenotypeQuality
all individuals: 2056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18987
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47583
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 2.861e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.542e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.514e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.035e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

DP
type: SiteQuality
SIO_000300: 2.299334e6

GenotypeQuality
all individuals: 18987
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8915
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6599
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.104509964854684e-5
allele num: 47517
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.293054e6

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

QD
type: SiteQuality
SIO_000300: 3.193e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 293
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18985
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4527
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9285
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.190334483990001e-4
allele num: 8401
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47379
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

FS
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.227e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 2.26988e6

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18986
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.188636633781053e-4
allele num: 8413
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 2.245727e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.501e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1986
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14560
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.194600406164138e-4
allele num: 8371
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6567
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8345
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.121e0

QD
type: SiteQuality
SIO_000300: 1.067e1

MQ
type: SiteQuality
SIO_000300: 5.405e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 2.234582e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

GenotypeQuality
all individuals: 1089
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.525087692542321e-4
allele num: 6557
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8361
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47183
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.55e-2

DP
type: SiteQuality
SIO_000300: 2.225081e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 2.249e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.16e0

GenotypeQuality
all individuals: 2051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18979
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46967
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.198897014746433e-4
allele num: 8341
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.82e0

QD
type: SiteQuality
SIO_000300: 2.137e1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
SIO_000300: 4.326e0

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.208783e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 419
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.416029453412631e-4
allele num: 7062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5351
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3595
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3476e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.052e0

DP
type: SiteQuality
SIO_000300: 1.143514e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

GenotypeQuality
all individuals: 1339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.325311010347634e-4
allele num: 8601
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41153
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.389467833819647e-4
allele num: 7197
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

African
type: Population
allele count: 81
allele frequency: 1.015292053146152e-2
allele num: 7978
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4131
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.171e0

FS
type: SiteQuality
SIO_000300: 1.528e0

DP
type: SiteQuality
SIO_000300: 1.400306e6

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.445432318292954e-5
allele num: 44990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9005
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 1.348e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.185e1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

DP
type: SiteQuality
SIO_000300: 1.522215e6

GenotypeQuality
all individuals: 1911
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.186380353541345e-4
allele num: 8429
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4485
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46695
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.584274e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

QD
type: SiteQuality
SIO_000300: 2.653e1

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.113405330008242e-5
allele num: 47317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9777
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.17e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.245e0

QD
type: SiteQuality
SIO_000300: 2.189e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 1.442e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.613319e6

GenotypeQuality
all individuals: 4968
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079563856202094e-4
allele num: 9263
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9995
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47715
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.128e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

FS
type: SiteQuality
SIO_000300: 2.2177e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.316e0

DP
type: SiteQuality
SIO_000300: 1.632749e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.775e0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.270903010033444e-5
allele num: 47840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.642509e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.749999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 2.253e1

VQSLOD
type: SiteQuality
SIO_000300: -1.941e0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4989
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9189
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47670
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.355157795572303e-4
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

DP
type: SiteQuality
SIO_000300: 1.613422e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.854e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 1.0928e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

QD
type: SiteQuality
SIO_000300: 2.251e1

GenotypeQuality
all individuals: 830
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8185
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9263
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.058514692183928e-4
allele num: 47236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.607e1

MQRankSum
type: SiteQuality
SIO_000300: -7.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.513e-1

DP
type: SiteQuality
SIO_000300: 1.571814e6

GenotypeQuality
all individuals: 5670
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.121025728042081e-5
allele num: 47147
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.284e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 9.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

DP
type: SiteQuality
SIO_000300: 1.563251e6

VQSLOD
type: SiteQuality
SIO_000300: 2.61e-1

GenotypeQuality
all individuals: 31938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.19047619047619e-4
allele num: 8400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.421e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.469e-1

QD
type: SiteQuality
SIO_000300: 9.5e0

DP
type: SiteQuality
SIO_000300: 1.558282e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.084e0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7077
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6889
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31850
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.523519329651495e-3
allele num: 5251
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3671
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 441
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

FS
type: SiteQuality
SIO_000300: 4.305e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 9.08774e5

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.768e1

GenotypeQuality
all individuals: 3735
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3789
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 9.219988936013276e-4
allele num: 5423
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4961
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7343
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 469
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.031693e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 5.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.763e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

MQ
type: SiteQuality
SIO_000300: 5.033e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.799e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 1.955e0

GenotypeQuality
all individuals: 315
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2721
bin: 3.25e1
variant carriers: 184

GenotypeQuality
all individuals: 5836
bin: 6.25e1
variant carriers: 83

South Asian
type: Population
allele count: 138
allele frequency: 5.075395365943362e-2
allele num: 2719
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 625
allele frequency: 2.767936226749336e-2
allele num: 22580
num of homozygotes: 3

African
type: Population
allele count: 96
allele frequency: 1.899109792284866e-2
allele num: 5055
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 4.33188937020993e-3
allele num: 3001
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 1.059381098410928e-2
allele num: 3587
num of homozygotes: 0

Latino
type: Population
allele count: 121
allele frequency: 3.084374203415753e-2
allele num: 3923
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 2.023121387283237e-2
allele num: 346
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

DP
type: SiteQuality
SIO_000300: 1.333876e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.116e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
all individuals: 1059
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 4.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3923
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5055
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3001
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.677822728944465e-4
allele num: 2719
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3587
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.328609388839681e-4
allele num: 22580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.333876e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.116e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

QD
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

South Asian
type: Population
allele count: 2
allele frequency: 7.35564545788893e-4
allele num: 2719
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.787844995818232e-4
allele num: 3587
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.116e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

QD
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.333876e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
all individuals: 1059
bin: 5.25e1
variant carriers: 126

GenotypeQuality
all individuals: 2721
bin: 3.25e1
variant carriers: 172

GenotypeQuality
all individuals: 1338
bin: 4.25e1
variant carriers: 137

European (Non-Finnish)
type: Population
allele count: 558
allele frequency: 2.471213463241807e-2
allele num: 22580
num of homozygotes: 0

East Asian
type: Population
allele count: 47
allele frequency: 1.310287148034569e-2
allele num: 3587
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 2.574475910261126e-2
allele num: 2719
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.332889036987671e-3
allele num: 3001
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 2.312138728323699e-2
allele num: 346
num of homozygotes: 0

African
type: Population
allele count: 59
allele frequency: 1.167161226508408e-2
allele num: 5055
num of homozygotes: 0

Latino
type: Population
allele count: 112
allele frequency: 2.854957940351771e-2
allele num: 3923
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.333876e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.116e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4893
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3639
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.309614429918914e-5
allele num: 30215
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.99e-2

QD
type: SiteQuality
SIO_000300: 5.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.367112e6

GenotypeQuality
all individuals: 1507
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5513
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.439083880094636e-5
allele num: 40999
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6813
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.615e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.771e0

DP
type: SiteQuality
SIO_000300: 1.374238e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.416e0

GenotypeQuality
all individuals: 5288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.725897920604915e-5
allele num: 42320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6975
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.697e0

QD
type: SiteQuality
SIO_000300: 1.312e1

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.454795e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

GenotypeQuality
all individuals: 2467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8659
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.785714285714286e-3
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8085
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6217
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.481e0

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.84e1

VQSLOD
type: SiteQuality
SIO_000300: -2.41e0

DP
type: SiteQuality
SIO_000300: 1.465644e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
SIO_000300: 1.45e1

GenotypeQuality
all individuals: 2582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3345
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4341
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7159
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.221001221001221e-4
allele num: 8190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43321
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.422e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.50282e6

FS
type: SiteQuality
SIO_000300: 6.696e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6849
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.075929910851522e-3
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7883
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8365
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45861
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 1.611991e6

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.992e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.595e1

GenotypeQuality
all individuals: 4027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5812
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 696
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.215362177929023e-4
allele num: 8228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8405
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.64452e6

QD
type: SiteQuality
SIO_000300: 2.626e1

GenotypeQuality
all individuals: 3362
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1477
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9419
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100752069240788e-5
allele num: 47602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.657e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.132e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.825e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.111e0

QD
type: SiteQuality
SIO_000300: 1.609e1

DP
type: SiteQuality
SIO_000300: 1.705555e6

GenotypeQuality
all individuals: 7574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47774
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.594896331738437e-3
allele num: 627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9733
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.781e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.838e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.208e0

DP
type: SiteQuality
SIO_000300: 1.719938e6

VQSLOD
type: SiteQuality
SIO_000300: -5.553e-1

FS
type: SiteQuality
SIO_000300: 2.274e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.174950064622254e-4
allele num: 8511
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10023
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.84e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 2.909e1

DP
type: SiteQuality
SIO_000300: 1.733272e6

GenotypeQuality
all individuals: 5864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32343
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086375964948884e-5
allele num: 47930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.066e-1

QD
type: SiteQuality
SIO_000300: 3.202e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.383e0

DP
type: SiteQuality
SIO_000300: 1.732426e6

GenotypeQuality
all individuals: 1758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.1468441391155e-4
allele num: 9316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.26161006866899e-5
allele num: 47911
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.730488e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.604e-1

QD
type: SiteQuality
SIO_000300: 1.792e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5867
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087595507494468e-5
allele num: 47902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.285e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

DP
type: SiteQuality
SIO_000300: 1.729586e6

GenotypeQuality
all individuals: 5868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9841
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.104e0

FS
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

DP
type: SiteQuality
SIO_000300: 1.728567e6

QD
type: SiteQuality
SIO_000300: 1.104e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47864
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174950064622254e-4
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 8.877000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.547e0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

DP
type: SiteQuality
SIO_000300: 1.725096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124946876328092e-5
allele num: 47060
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.076e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

DP
type: SiteQuality
SIO_000300: 1.657362e6

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.388e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 8.506e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8369
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46854
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079330814894765e-4
allele num: 9265
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.742e0

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 1.704e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.635e0

QD
type: SiteQuality
SIO_000300: 5.46e0

DP
type: SiteQuality
SIO_000300: 1.646152e6

MQ
type: SiteQuality
SIO_000300: 5.912e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.512172992590352e-4
allele num: 6613
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8267
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9247
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 1.64522e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1721
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 175
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.433e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.022e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.01993e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 91
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 557
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 191
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

FS
type: SiteQuality
SIO_000300: 3.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

DP
type: SiteQuality
SIO_000300: 1.24764e5

VQSLOD
type: SiteQuality
SIO_000300: -1.883e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 559
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 91
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.077e1

VQSLOD
type: SiteQuality
SIO_000300: -2.61e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.2456e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 297
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European (Finnish)
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Other
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East Asian
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FS
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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QD
type: SiteQuality
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 6.161429451632779e-4
allele num: 1623
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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QD
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
type: SiteQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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VQSLOD
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QD
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FS
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DP
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MQ
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InbreedingCoeff
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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ClippingRankSum
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VQSLOD
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QD
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 1.11794298490777e-3
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1901
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Other
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
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Other
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 3.636363636363636e-3
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European (Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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DP
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QD
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 0.0e0

East Asian
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allele frequency: 0.0e0
allele num: 301
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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Latino
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allele frequency: 0.0e0
allele num: 343
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.510574018126888e-3
allele num: 662
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Other
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South Asian
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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Other
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East Asian
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allele frequency: 0.0e0
allele num: 513
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.213368747233289e-4
allele num: 4518
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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FS
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DP
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Latino
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allele frequency: 2.496714848883048e-2
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Other
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQRankSum
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MQ
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QD
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South Asian
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East Asian
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Latino
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allele frequency: 2.031063321385902e-2
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European (Finnish)
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African
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Other
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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DP
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African
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allele num: 1112
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South Asian
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Other
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Latino
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Other
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VQSLOD
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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South Asian
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Other
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East Asian
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Latino
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African
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European (Finnish)
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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Other
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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DP
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FS
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.705e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

Other
type: Population
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allele num: 160
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Latino
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allele frequency: 0.0e0
allele num: 1901
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European (Finnish)
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allele frequency: 0.0e0
allele num: 677
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South Asian
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allele frequency: 2.035830618892508e-4
allele num: 4912
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African
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European (Non-Finnish)
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QD
type: SiteQuality
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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African
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DP
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QD
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ClippingRankSum
type: SiteQuality
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FS
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VQSLOD
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MQ
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.66e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ReadPosRankSum
type: SiteQuality
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Latino
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East Asian
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African
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Other
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European (Non-Finnish)
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South Asian
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.766e1

FS
type: SiteQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.992688919518188e-5
allele num: 16687
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Latino
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allele frequency: 0.0e0
allele num: 3229
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1134
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South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 6.3237e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 8.83e0

MQ
type: SiteQuality
SIO_000300: 5.407e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3481
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South Asian
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allele count: 1
allele frequency: 1.721763085399449e-4
allele num: 5808
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1196
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17630
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African
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allele num: 2874
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MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

FS
type: SiteQuality
SIO_000300: 3.263e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.032e0

QD
type: SiteQuality
SIO_000300: 5.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
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allele num: 2405
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.76243093922652e-4
allele num: 3620
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 6.64609e5

South Asian
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allele frequency: 1.68123739071957e-4
allele num: 5948
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2550
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3882
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.824e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 2.409e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 6.84231e5

African
type: Population
allele count: 0
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allele num: 3239
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 1.016053647632595e-4
allele num: 19684
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

VQSLOD
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

East Asian
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African
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Other
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5333
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European (Non-Finnish)
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allele count: 1
allele frequency: 4.077638231936063e-5
allele num: 24524
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1842
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FS
type: SiteQuality
SIO_000300: 5.932e0

MQ
type: SiteQuality
SIO_000300: 5.685e1

VQSLOD
type: SiteQuality
SIO_000300: -2.438e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.662e0

QD
type: SiteQuality
SIO_000300: 1.539e1

European (Finnish)
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allele frequency: 0.0e0
allele num: 1911
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African
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East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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Other
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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QD
type: SiteQuality
SIO_000300: 1.119e1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1953
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.852376916557516e-5
allele num: 25958
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Latino
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allele frequency: 3.51123595505618e-4
allele num: 5696
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East Asian
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South Asian
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Other
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QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQRankSum
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.715e1

ReadPosRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e0

DP
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SIO_000300: 8.32674e5

European (Finnish)
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allele count: 0
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East Asian
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allele frequency: 5.13347022587269e-4
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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QD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -8.3e-3

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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Other
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European (Non-Finnish)
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
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MQ
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.951e0

ClippingRankSum
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SIO_000300: -4.1e-2

BaseQRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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