19-52888070-T-TTTGGGAGGCCGAGGCGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888087
    reference: chr 19
allele count: 13993
allele frequency: 1.204279050553385e-1
allele num: 116194
alternate allele: TTTGGGAGGCCGAGGCGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Cys413PhefsTer22
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 2.75e1
  variant carriers: 2315
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 2062
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 807
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 1643
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.75e1
  variant carriers: 1610
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 2080
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 1251
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.25e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.75e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 225
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 196
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 6.75e1
  variant carriers: 221
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 223
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.25e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 21835
  bin: 6.25e1
  variant carriers: 224
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 7.75e1
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 16230
  bin: 9.75e1
  variant carriers: 11180
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 212
hgvs: p.Cys413PhefsTer22
num of homozygotes: 1
population: African
  type: Population
  allele count: 993
  allele frequency: 1.038051432155551e-1
  allele num: 9566
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1907
  allele frequency: 1.212487283825025e-1
  allele num: 15728
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

19-52888070-T-TTTGGGAGGCCGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888083
    reference: chr 19
allele count: 214
allele frequency: 1.841747422414238e-3
allele num: 116194
alternate allele: TTTGGGAGGCCGAG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Cys413PhefsTer10
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 16230
  bin: 9.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 21835
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 7
hgvs: p.Cys413PhefsTer10
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 125
  allele frequency: 1.949104970997318e-3
  allele num: 64132
  num of homozygotes: 0
population: African
  type: Population
  allele count: 17
  allele frequency: 1.777127325946059e-3
  allele num: 9566
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-52888070-T-TTTGGGAGGCCGAGGCGGGTGGATCATGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888099
    reference: chr 19
allele count: 466
allele frequency: 4.0105341067525e-3
allele num: 116194
alternate allele: TTTGGGAGGCCGAGGCGGGTGGATCATGAG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Cys413PhefsTer26
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 16230
  bin: 9.75e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 21835
  bin: 6.25e1
  variant carriers: 12
hgvs: p.Cys413PhefsTer26
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 268
  allele frequency: 4.17888105781825e-3
  allele num: 64132
  num of homozygotes: 0
population: African
  type: Population
  allele count: 31
  allele frequency: 3.240643947313401e-3
  allele num: 9566
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-52888070-T-TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888131
    reference: chr 19
allele count: 26
allele frequency: 2.237637055269635e-4
allele num: 116194
alternate allele: TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Cys413PhefsTer26
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21835
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16230
  bin: 9.75e1
  variant carriers: 20
hgvs: p.Cys413PhefsTer26
num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 1.149425287356322e-3
  allele num: 870
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.271617497456765e-4
  allele num: 15728
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-52888071-G-GAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888071
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888116
    reference: chr 19
allele count: 9
allele frequency: 1.365208421819064e-4
allele num: 65924
alternate allele: GAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCC
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Cys413delinsTer
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18551
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Cys413delinsTer
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.853911753800519e-4
  allele num: 5394
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 498
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

19-52888071-G-GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888071
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888118
    reference: chr 19
allele count: 311
allele frequency: 4.7175535465081e-3
allele num: 65924
alternate allele: GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Cys413TrpfsTer9
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18551
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 288
hgvs: p.Cys413TrpfsTer9
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 40
  allele frequency: 1.175778953556731e-2
  allele num: 3402
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 20
  allele frequency: 3.707823507601038e-3
  allele num: 5394
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

19-52888071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888071
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888071
    reference: chr 19
allele count: 2247
allele frequency: 3.408470359808264e-2
allele num: 65924
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1238G>T
  hgvsp: ENSP00000406318.2:p.Cys413Phe
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.75e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.75e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 2.25e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 22487
  bin: 2.5e0
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 910
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 1.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 18551
  bin: 6.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 6.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.25e1
  variant carriers: 81
hgvs: p.Cys413Phe
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1167
  allele frequency: 3.22233267064281e-2
  allele num: 36216
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 111
  allele frequency: 3.262786596119929e-2
  allele num: 3402
  num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-52888072-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888072
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888072
    reference: chr 19
allele count: 535
allele frequency: 4.606906053560665e-3
allele num: 116130
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1239T>A
  hgvsp: ENSP00000406318.2:p.Cys413Ter
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 14472
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15089
  bin: 2.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 3.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 8.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 5.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 5.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 9729
  bin: 9.75e1
  variant carriers: 173
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 21088
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 4.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 7.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 7.75e1
  variant carriers: 15
hgvs: p.Cys413Ter
num of homozygotes: 0
population: Other
  type: Population
  allele count: 2
  allele frequency: 2.277904328018223e-3
  allele num: 878
  num of homozygotes: 0
population: African
  type: Population
  allele count: 41
  allele frequency: 4.262840507381992e-3
  allele num: 9618
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

19-52888072-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888072
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888072
    reference: chr 19
allele count: 213
allele frequency: 1.834151382071816e-3
allele num: 116130
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1239T>C
  hgvsp: ENST00000422689.2:c.1239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14472
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15089
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 4.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9729
  bin: 9.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21088
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 3.75e1
  variant carriers: 5
hgvs: p.Cys413Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 33
  allele frequency: 2.127110996519273e-3
  allele num: 15514
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 8
  allele frequency: 9.458500827618822e-4
  allele num: 8458
  num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

19-52888073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888073
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888073
    reference: chr 19
allele count: 2
allele frequency: 1.714442463310931e-5
allele num: 116656
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1240G>A
  hgvsp: ENSP00000406318.2:p.Gly414Ser
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21471
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly414Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64340
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11146
  num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-52888073-G-GGGAGGCCGAGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888073
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888085
    reference: chr 19
allele count: 274
allele frequency: 2.348786174735976e-3
allele num: 116656
alternate allele: GGGAGGCCGAGGC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 15125
  bin: 2.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 21471
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 9858
  bin: 9.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4970
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 2.25e1
  variant carriers: 9
hgvs: p.Gly414_Lys415insArgProArgArg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 47
  allele frequency: 2.997831356040311e-3
  allele num: 15678
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 20
  allele frequency: 2.358490566037736e-3
  allele num: 8480
  num of homozygotes: 0
population: African
  type: Population
  allele count: 19
  allele frequency: 1.967281010561193e-3
  allele num: 9658
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-52888074-G-GAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
allele count: 6753
allele frequency: 5.728026871596519e-2
allele num: 117894
alternate allele: GAT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1241_1242insAT
  hgvsp: ENSP00000406318.2:p.Lys415SerfsTer15
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 762
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 1098
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 786
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 998
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 390
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 1036
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 4067
  bin: 6.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 18301
  bin: 9.75e1
  variant carriers: 5315
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 20445
  bin: 6.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 97
hgvs: p.Lys415SerfsTer15
num of homozygotes: 0
population: Other
  type: Population
  allele count: 50
  allele frequency: 5.720823798627003e-2
  allele num: 874
  num of homozygotes: 0
population: African
  type: Population
  allele count: 468
  allele frequency: 4.820766378244747e-2
  allele num: 9708
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

19-52888074-G-GATCATGAGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888084
    reference: chr 19
allele count: 1424
allele frequency: 1.207864692011468e-2
allele num: 117894
alternate allele: GATCATGAGGT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Lys415SerfsTer2
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 18301
  bin: 9.75e1
  variant carriers: 1049
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 20445
  bin: 6.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 4067
  bin: 6.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 17
hgvs: p.Lys415SerfsTer2
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 90
  allele frequency: 1.062322946175637e-2
  allele num: 8472
  num of homozygotes: 0
population: African
  type: Population
  allele count: 88
  allele frequency: 9.064688916357644e-3
  allele num: 9708
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-52888074-G-GATCATGAGGTCAGGAGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888092
    reference: chr 19
allele count: 1905
allele frequency: 1.615858313400173e-2
allele num: 117894
alternate allele: GATCATGAGGTCAGGAGAT
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 18301
  bin: 9.75e1
  variant carriers: 1622
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 20445
  bin: 6.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4067
  bin: 6.75e1
  variant carriers: 25
hgvs: p.Gly414_Lys415insSerTerGlyGlnGluIle
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 150
  allele frequency: 1.330967169476486e-2
  allele num: 11270
  num of homozygotes: 0
population: African
  type: Population
  allele count: 135
  allele frequency: 1.390605686032139e-2
  allele num: 9708
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-52888074-G-GATCATGAGGTCAGGAGATCGAGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888098
    reference: chr 19
allele count: 1145
allele frequency: 9.712114272142773e-3
allele num: 117894
alternate allele: GATCATGAGGTCAGGAGATCGAGAC
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20445
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 18301
  bin: 9.75e1
  variant carriers: 1027
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4067
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 9
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 676
  allele frequency: 1.040064003938704e-2
  allele num: 64996
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 7
  allele frequency: 8.009153318077803e-3
  allele num: 874
  num of homozygotes: 0
population: African
  type: Population
  allele count: 88
  allele frequency: 9.064688916357644e-3
  allele num: 9708
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-52888074-G-GATCATGAGGTCAGGAGATCGAGACCATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888102
    reference: chr 19
allele count: 424
allele frequency: 3.596451049247629e-3
allele num: 117894
alternate allele: GATCATGAGGTCAGGAGATCGAGACCATC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Lys415SerfsTer2
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20445
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4067
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18301
  bin: 9.75e1
  variant carriers: 394
hgvs: p.Lys415SerfsTer2
num of homozygotes: 0
population: African
  type: Population
  allele count: 26
  allele frequency: 2.678203543469304e-3
  allele num: 9708
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 32
  allele frequency: 2.839396628216504e-3
  allele num: 11270
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-52888074-GCAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888074
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888071
    reference: chr 19
allele count: 492
allele frequency: 4.173240368466589e-3
allele num: 117894
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1242_1244delCAA
  hgvsp: ENSP00000406318.2:p.Lys415del
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18301
  bin: 9.75e1
  variant carriers: 437
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4067
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 20445
  bin: 6.25e1
  variant carriers: 3
hgvs: p.Lys415del
num of homozygotes: 0
population: African
  type: Population
  allele count: 33
  allele frequency: 3.399258343634116e-3
  allele num: 9708
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 38
  allele frequency: 5.855161787365178e-3
  allele num: 6490
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: GCAA
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-52888075-C-CATCCTGGCTAACAAGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888075
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888093
    reference: chr 19
allele count: 5
allele frequency: 8.053864244064302e-5
allele num: 62082
alternate allele: CATCCTGGCTAACAAGGTG
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly414_Lys415insIleLeuAlaAsnLysVal
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3158
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5688
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6022
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

19-52888075-C-CATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888075
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888115
    reference: chr 19
allele count: 10
allele frequency: 1.61077284881286e-4
allele num: 62082
alternate allele: CATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Lys415MetfsTer11
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys415MetfsTer11
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 6
  allele frequency: 1.758705592683785e-4
  allele num: 34116
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 484
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

19-52888075-C-CTAACAAGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888075
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888085
    reference: chr 19
allele count: 3
allele frequency: 4.832318546438581e-5
allele num: 62082
alternate allele: CTAACAAGGTG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Lys415Ter
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18712
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys415Ter
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3158
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6022
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-52888075-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888075
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888075
    reference: chr 19
allele count: 381
allele frequency: 6.137044553976998e-3
allele num: 62082
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1242C>G
  hgvsp: ENST00000422689.2:c.1242C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 2.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 1.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 25176
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 18712
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 9.75e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 8
hgvs: p.Gly414Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 27
  allele frequency: 4.746835443037975e-3
  allele num: 5688
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 54
  allele frequency: 7.281553398058253e-3
  allele num: 7416
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

19-52888076-A-ATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888078
    reference: chr 19
allele count: 2658
allele frequency: 2.271406597162878e-2
allele num: 117020
alternate allele: ATG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1243_1244insTG
  hgvsp: ENSP00000406318.2:p.Lys415MetfsTer15
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 441
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 408
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 20739
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 15426
  bin: 9.75e1
  variant carriers: 2115
hgvs: p.Lys415MetfsTer15
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 188
  allele frequency: 2.231718898385565e-2
  allele num: 8424
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 194
  allele frequency: 3.024633613969442e-2
  allele num: 6414
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-52888076-A-ATGAGGTCAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888086
    reference: chr 19
allele count: 591
allele frequency: 5.050418731840711e-3
allele num: 117020
alternate allele: ATGAGGTCAGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Lys415MetfsTer7
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20739
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 15426
  bin: 9.75e1
  variant carriers: 446
hgvs: p.Lys415MetfsTer7
num of homozygotes: 0
population: Other
  type: Population
  allele count: 5
  allele frequency: 5.720823798627002e-3
  allele num: 874
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 50
  allele frequency: 4.495594317568782e-3
  allele num: 11122
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

19-52888076-A-ATGAGGTCAGGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888088
    reference: chr 19
allele count: 809
allele frequency: 6.913348145616134e-3
allele num: 117020
alternate allele: ATGAGGTCAGGAG
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: protein altering
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 20739
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 15426
  bin: 9.75e1
  variant carriers: 636
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 19
hgvs: p.Lys415delinsMetArgSerGlyGlu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 5
  allele frequency: 5.720823798627002e-3
  allele num: 874
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 52
  allele frequency: 8.107265357031494e-3
  allele num: 6414
  num of homozygotes: 0
population: African
  type: Population
  allele count: 56
  allele frequency: 5.785123966942148e-3
  allele num: 9680
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-52888076-A-ATGAGGTCAGGAGATCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888092
    reference: chr 19
allele count: 777
allele frequency: 6.639890616988549e-3
allele num: 117020
alternate allele: ATGAGGTCAGGAGATCG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Lys415MetfsTer9
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15426
  bin: 9.75e1
  variant carriers: 657
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20739
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 6
hgvs: p.Lys415MetfsTer9
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 52
  allele frequency: 6.172839506172839e-3
  allele num: 8424
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 65
  allele frequency: 5.844272612839417e-3
  allele num: 11122
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-52888076-A-ATGAGGTCAGGAGATCGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888094
    reference: chr 19
allele count: 528
allele frequency: 4.512049222355153e-3
allele num: 117020
alternate allele: ATGAGGTCAGGAGATCGAG
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: protein altering
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20739
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 15426
  bin: 9.75e1
  variant carriers: 461
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 7
hgvs: p.Lys415delinsMetArgSerGlyAspArgGlu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 68
  allele frequency: 4.270820248712473e-3
  allele num: 15922
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 37
  allele frequency: 5.768631119426255e-3
  allele num: 6414
  num of homozygotes: 0
population: African
  type: Population
  allele count: 44
  allele frequency: 4.545454545454545e-3
  allele num: 9680
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-52888076-A-ATGAGGTCAGGAGATCGAGACCATCCTGGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888106
    reference: chr 19
allele count: 280
allele frequency: 2.392753375491369e-3
allele num: 117020
alternate allele: ATGAGGTCAGGAGATCGAGACCATCCTGGCT
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15426
  bin: 9.75e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20739
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
  type: Population
  allele count: 18
  allele frequency: 1.859504132231405e-3
  allele num: 9680
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 31
  allele frequency: 1.946991583971863e-3
  allele num: 15922
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 19
  allele frequency: 2.255460588793922e-3
  allele num: 8424
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

19-52888077-A-AGGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888081
    reference: chr 19
allele count: 516
allele frequency: 7.796917497733454e-3
allele num: 66180
alternate allele: AGGTC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1244_1245insGGTC
  hgvsp: ENSP00000406318.2:p.Ala416ValfsTer4
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19038
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23553
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 460
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 3
hgvs: p.Ala416ValfsTer4
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 60
  allele frequency: 7.23938223938224e-3
  allele num: 8288
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 35
  allele frequency: 5.45681322107889e-3
  allele num: 6414
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-52888077-A-AGGTCAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888084
    reference: chr 19
allele count: 766
allele frequency: 1.157449380477486e-2
allele num: 66180
alternate allele: AGGTCAGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1244_1245insGGTCAGG
  hgvsp: ENSP00000406318.2:p.Ala416ValfsTer5
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 4.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 23553
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 19038
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 602
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 11
hgvs: p.Ala416ValfsTer5
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 90
  allele frequency: 1.085907335907336e-2
  allele num: 8288
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 438
  allele frequency: 1.207609594706369e-2
  allele num: 36270
  num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

19-52888077-A-AGGTCAGGAGATCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888090
    reference: chr 19
allele count: 586
allele frequency: 8.854638863705046e-3
allele num: 66180
alternate allele: AGGTCAGGAGATCG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Ala416ValfsTer7
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19038
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 23553
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 521
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.5e0
  variant carriers: 4
hgvs: p.Ala416ValfsTer7
num of homozygotes: 0
population: Other
  type: Population
  allele count: 4
  allele frequency: 7.8125e-3
  allele num: 512
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 39
  allele frequency: 1.169766046790642e-2
  allele num: 3334
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-52888077-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888077
    reference: chr 19
allele count: 661
allele frequency: 9.987911755817468e-3
allele num: 66180
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1244A>G
  hgvsp: ENSP00000406318.2:p.Lys415Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 4.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 23553
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 363
genotype quality: GenotypeQuality
  all individuals: 19038
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 7.25e1
  variant carriers: 21
hgvs: p.Lys415Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 56
  allele frequency: 9.41492938802959e-3
  allele num: 5948
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 62
  allele frequency: 9.66635484876832e-3
  allele num: 6414
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-52888077-A-AGATCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888077
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888082
    reference: chr 19
allele count: 49
allele frequency: 7.404049561801149e-4
allele num: 66180
alternate allele: AGATCG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1244_1245insGATCG
  hgvsp: ENSP00000406318.2:p.Ala416IlefsTer15
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19038
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 9.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala416IlefsTer15
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 5.541189508681197e-4
  allele num: 5414
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 6
  allele frequency: 9.354536950420954e-4
  allele num: 6414
  num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

19-52888078-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888078
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888078
    reference: chr 19
allele count: 1381
allele frequency: 2.234555516002718e-2
allele num: 61802
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1245A>G
  hgvsp: ENST00000422689.2:c.1245A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 1.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 4.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13709
  bin: 2.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 3.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 1.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 19016
  bin: 6.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 26009
  bin: 2.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 9.75e1
  variant carriers: 732
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 42
hgvs: p.Lys415Lys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 63
  allele frequency: 2.052117263843648e-2
  allele num: 3070
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 151
  allele frequency: 2.491749174917492e-2
  allele num: 6060
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

19-52888078-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888078
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888078
    reference: chr 19
allele count: 298
allele frequency: 4.821850425552571e-3
allele num: 61802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1245A>T
  hgvsp: ENSP00000406318.2:p.Lys415Asn
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 13709
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 26009
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 9.75e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19016
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.25e1
  variant carriers: 8
hgvs: p.Lys415Asn
num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 2.040816326530612e-3
  allele num: 490
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 174
  allele frequency: 5.158000830023122e-3
  allele num: 33734
  num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-52888079-G-GAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888081
    reference: chr 19
allele count: 22
allele frequency: 3.53028017587214e-4
allele num: 62318
alternate allele: GAC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1246_1247insAC
  hgvsp: ENSP00000406318.2:p.Ala416AspfsTer14
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala416AspfsTer14
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 2
  allele frequency: 3.913894324853229e-4
  allele num: 5110
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 11
  allele frequency: 3.226374142077785e-4
  allele num: 34094
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-52888079-G-GGAGATCGAGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888090
    reference: chr 19
allele count: 516
allele frequency: 8.280111685227382e-3
allele num: 62318
alternate allele: GGAGATCGAGAC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsp: ENSP00000406318.2:p.Ala416GlyfsTer17
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 2.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 19301
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25856
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 460
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 3
hgvs: p.Ala416GlyfsTer17
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 60
  allele frequency: 7.682458386683738e-3
  allele num: 7810
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 45
  allele frequency: 1.453488372093023e-2
  allele num: 3096
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-52888079-G-GGTGAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888085
    reference: chr 19
allele count: 26
allele frequency: 4.172149298757983e-4
allele num: 62318
alternate allele: GGTGAAA
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1246_1247insGTGAAA
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: protein altering
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala416delinsGlyGluThr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 5.008347245409015e-4
  allele num: 5990
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.956947162426615e-4
  allele num: 5110
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-52888079-G-GGTGAAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888086
    reference: chr 19
allele count: 24
allele frequency: 3.851214737315062e-4
allele num: 62318
alternate allele: GGTGAAAC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1246_1247insGTGAAAC
  hgvsp: ENSP00000406318.2:p.Ala416GlyfsTer5
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25856
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala416GlyfsTer5
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3096
  num of homozygotes: 0
population: African
  type: Population
  allele count: 7
  allele frequency: 1.222493887530562e-3
  allele num: 5726
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-52888079-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888079
    reference: chr 19
allele count: 488
allele frequency: 7.830803299207292e-3
allele num: 62318
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1246G>T
  hgvsp: ENSP00000406318.2:p.Ala416Ser
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19301
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25856
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 437
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Ala416Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 38
  allele frequency: 1.227390180878553e-2
  allele num: 3096
  num of homozygotes: 0
population: African
  type: Population
  allele count: 33
  allele frequency: 5.763185469786936e-3
  allele num: 5726
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

19-52888082-T-TGAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888082
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888086
    reference: chr 19
allele count: 489
allele frequency: 7.500460150929505e-3
allele num: 65196
alternate allele: TGAGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1249_1250insGAGG
  hgvsp: ENSP00000406318.2:p.Phe417Ter
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8214
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 15131
  bin: 2.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24555
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 437
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19926
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 4.25e1
  variant carriers: 5
hgvs: p.Phe417Ter
num of homozygotes: 0
population: Other
  type: Population
  allele count: 4
  allele frequency: 8.097165991902834e-3
  allele num: 494
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 263
  allele frequency: 7.391377662863245e-3
  allele num: 35582
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-52888083-T-TCAGGAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888083
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888090
    reference: chr 19
allele count: 489
allele frequency: 7.461092462618248e-3
allele num: 65540
alternate allele: TCAGGAGA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1250_1251insCAGGAGA
  hgvsp: ENSP00000406318.2:p.Asp419ArgfsTer2
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 3.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 1.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14013
  bin: 2.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 15142
  bin: 2.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 24286
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 436
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19869
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.75e1
  variant carriers: 5
hgvs: p.Asp419ArgfsTer2
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 56
  allele frequency: 8.959999999999999e-3
  allele num: 6250
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 57
  allele frequency: 6.691711669405964e-3
  allele num: 8518
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-52888085-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888085
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888085
    reference: chr 19
allele count: 493
allele frequency: 6.90514874782901e-3
allele num: 71396
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1252A>C
  hgvsp: ENST00000422689.2:c.1252A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14034
  bin: 2.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 2.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8354
  bin: 3.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20687
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20975
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 9.75e1
  variant carriers: 441
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 4.75e1
  variant carriers: 5
hgvs: p.Arg418Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 34
  allele frequency: 5.256648113790971e-3
  allele num: 6468
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 266
  allele frequency: 6.838397861072549e-3
  allele num: 38898
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

19-52888089-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888089
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888089
    reference: chr 19
allele count: 162
allele frequency: 2.235099337748344e-3
allele num: 72480
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1256A>G
  hgvsp: ENSP00000406318.2:p.Asp419Gly
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 15608
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 2.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 21186
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 20828
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 10
hgvs: p.Asp419Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 2
  allele frequency: 3.745318352059925e-3
  allele num: 534
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 76
  allele frequency: 1.928248845587862e-3
  allele num: 39414
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

19-52888091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888091
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888091
    reference: chr 19
allele count: 164
allele frequency: 2.267573696145125e-3
allele num: 72324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1258T>C
  hgvsp: ENSP00000406318.2:p.Cys420Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14499
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 20989
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 21202
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.75e1
  variant carriers: 5
hgvs: p.Cys420Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 2
  allele frequency: 3.731343283582089e-3
  allele num: 536
  num of homozygotes: 0
population: African
  type: Population
  allele count: 5
  allele frequency: 7.785736530675802e-4
  allele num: 6422
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-52888092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888092
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888092
    reference: chr 19
allele count: 1
allele frequency: 1.318461092213169e-5
allele num: 75846
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1259G>T
  hgvsp: ENSP00000406318.2:p.Cys420Phe
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19078
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 21852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys420Phe
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.36986301369863e-4
  allele num: 7300
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6114
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-52888099-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888099
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888099
    reference: chr 19
allele count: 1
allele frequency: 1.244740969404267e-5
allele num: 80338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1266C>A
  hgvsp: ENST00000422689.2:c.1266C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14746
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16697
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2791
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genotype quality: GenotypeQuality
  all individuals: 1077
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genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 863
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 739
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 3804
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly422Gly
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11064
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6344
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-52888103-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888103
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888103
    reference: chr 19
allele count: 1
allele frequency: 8.440528039434147e-6
allele num: 118476
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1270A>C
  hgvsp: ENSP00000406318.2:p.Thr424Pro
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
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genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 26033
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1576
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genotype quality: GenotypeQuality
  all individuals: 64
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genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 7021
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6354
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr424Pro
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9694
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8536
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/19-52888104-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888104
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888104
    reference: chr 19
allele count: 1
allele frequency: 1.171097318187141e-5
allele num: 85390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1271C>A
  hgvsp: ENSP00000406318.2:p.Thr424Asn
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr424Asn
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 628
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.496110113704369e-4
  allele num: 6684
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-52888107-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888107
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888107
    reference: chr 19
allele count: 1
allele frequency: 1.165093790050099e-5
allele num: 85830
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1274C>T
  hgvsp: ENSP00000406318.2:p.Ala425Val
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16566
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala425Val
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46746
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 636
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-52888117-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888117
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888117
    reference: chr 19
allele count: 3
allele frequency: 2.583979328165375e-5
allele num: 116100
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1284A>G
  hgvsp: ENST00000422689.2:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2854
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  variant carriers: 0
hgvs: p.Leu428Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10928
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9486
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-52888119-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888119
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888119
    reference: chr 19
allele count: 1
allele frequency: 9.797198001371608e-6
allele num: 102070
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1286T>G
  hgvsp: ENSP00000406318.2:p.Ile429Ser
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26092
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 4912
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile429Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 13674
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9394
  num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

19-52888120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888120
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888120
    reference: chr 19
allele count: 2
allele frequency: 2.142841836844023e-5
allele num: 93334
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1287T>C
  hgvsp: ENST00000422689.2:c.1287T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8071
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile429Ile
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7944
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 710
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

19-52888126-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888126
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888126
    reference: chr 19
allele count: 1
allele frequency: 1.040799333888426e-5
allele num: 96080
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1293T>G
  hgvsp: ENST00000422689.2:c.1293T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr431Thr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 726
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.895016107636915e-5
  allele num: 52770
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/19-52888141-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888141
    reference: chr 19
allele count: 1
allele frequency: 9.586257141761571e-6
allele num: 104316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1308C>A
  hgvsp: ENSP00000406318.2:p.Tyr436Ter
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr436Ter
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9102
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8652
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-52888145-TGTAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888145
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888140
    reference: chr 19
allele count: 1
allele frequency: 9.871863215463286e-6
allele num: 101298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1314_1318delTAAAG
  hgvsp: ENSP00000406318.2:p.Cys438Ter
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys438Ter
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8448
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7138
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TGTAAA
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-52888146-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888146
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888146
    reference: chr 19
allele count: 3
allele frequency: 2.966713474812603e-5
allele num: 101122
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1313G>C
  hgvsp: ENSP00000406318.2:p.Cys438Ser
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Cys438Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7120
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 762
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-52888161-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888161
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888161
    reference: chr 19
allele count: 1
allele frequency: 1.49026854639206e-5
allele num: 67102
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1328A>C
  hgvsp: ENSP00000406318.2:p.Lys443Thr
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11033
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys443Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4496
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 582
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

19-52888169-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888169
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888169
    reference: chr 19
allele count: 1
allele frequency: 1.565778348416998e-5
allele num: 63866
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1336A>T
  hgvsp: ENSP00000406318.2:p.Arg446Trp
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg446Trp
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5768
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4250
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

19-52888171-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888171
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888171
    reference: chr 19
allele count: 3
allele frequency: 3.582004011844494e-5
allele num: 83752
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1338G>T
  hgvsp: ENSP00000406318.2:p.Arg446Ser
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16860
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5007
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Arg446Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5540
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4968
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-52888174-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888174
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888174
    reference: chr 19
allele count: 1
allele frequency: 1.825017337664708e-5
allele num: 54794
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1341T>C
  hgvsp: ENST00000422689.2:c.1341T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16644
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
  all individuals: 556
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genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6908
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His447His
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3366
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3324
  num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-52888175-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888175
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888175
    reference: chr 19
allele count: 1
allele frequency: 1.68827660723933e-5
allele num: 59232
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1342A>C
  hgvsp: ENST00000422689.2:c.1342A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16686
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Arg448Arg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10606
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3566
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/19-52888182-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888182
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888182
    reference: chr 19
allele count: 1
allele frequency: 2.090738030524775e-5
allele num: 47830
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1349C>A
  hgvsp: ENSP00000406318.2:p.Ser450Tyr
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser450Tyr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 25008
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 3.556187766714083e-4
  allele num: 2812
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/19-52888187-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888187
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888187
    reference: chr 19
allele count: 2
allele frequency: 2.695417789757412e-5
allele num: 74200
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1354A>C
  hgvsp: ENSP00000406318.2:p.Ser452Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser452Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 634
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4718
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-52888191-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888191
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888191
    reference: chr 19
allele count: 1
allele frequency: 1.868320753306928e-5
allele num: 53524
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1358A>G
  hgvsp: ENSP00000406318.2:p.Asn453Ser
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1010
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2871
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genotype quality: GenotypeQuality
  all individuals: 389
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hgvs: p.Asn453Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 498
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10164
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

19-52888196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888196
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888196
    reference: chr 19
allele count: 1
allele frequency: 1.784184984299172e-5
allele num: 56048
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1363C>T
  hgvsp: ENSP00000406318.2:p.Gln455Ter
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln455Ter
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 3.312574532926991e-5
  allele num: 30188
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10414
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

19-52888206-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888206
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888206
    reference: chr 19
allele count: 2
allele frequency: 3.525471531817381e-5
allele num: 56730
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1373A>G
  hgvsp: ENSP00000406318.2:p.His458Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6834
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5644
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4994
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His458Arg
num of homozygotes: 1
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 502
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5092
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

19-52888210-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888210
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888210
    reference: chr 19
allele count: 23072
allele frequency: 4.326757182506939e-1
allele num: 53324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1377T>C
  hgvsp: ENST00000422689.2:c.1377T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 831
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.25e1
  variant carriers: 897
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 670
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 1.75e1
  variant carriers: 2555
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 817
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 2.5e0
  variant carriers: 1501
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 628
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 719
genotype depth: GenotypeDepth
  all individuals: 12796
  bin: 1.25e1
  variant carriers: 8008
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 826
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 563
genotype depth: GenotypeDepth
  all individuals: 23793
  bin: 7.5e0
  variant carriers: 10426
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 823
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 8.75e1
  variant carriers: 960
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 867
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.75e1
  variant carriers: 413
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 6.75e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.75e1
  variant carriers: 508
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 968
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.75e1
  variant carriers: 579
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.25e1
  variant carriers: 450
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.75e1
  variant carriers: 663
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 1.25e1
  variant carriers: 832
genotype quality: GenotypeQuality
  all individuals: 4594
  bin: 7.5e0
  variant carriers: 633
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 1.75e1
  variant carriers: 1918
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 6.25e1
  variant carriers: 603
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 2.5e0
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 11698
  bin: 2.25e1
  variant carriers: 1907
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 9.25e1
  variant carriers: 930
genotype quality: GenotypeQuality
  all individuals: 17113
  bin: 9.75e1
  variant carriers: 16617
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.25e1
  variant carriers: 382
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 944
hgvs: p.Thr459Thr
num of homozygotes: 4331
population: African
  type: Population
  allele count: 1891
  allele frequency: 3.895756077461887e-1
  allele num: 4854
  num of homozygotes: 301
population: East Asian
  type: Population
  allele count: 1024
  allele frequency: 3.45945945945946e-1
  allele num: 2960
  num of homozygotes: 120
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

19-52888211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888211
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888211
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 47200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1378G>A
  hgvsp: ENSP00000406318.2:p.Gly460Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25713
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9900
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly460Arg
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 25088
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2000
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-52888213-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888213
    reference: chr 19
allele count: 2
allele frequency: 4.264392324093817e-5
allele num: 46900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1380A>T
  hgvsp: ENST00000422689.2:c.1380A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5077
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6172
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly460Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 8.034709946970914e-5
  allele num: 24892
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9554
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-52888227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888227
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888227
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 40450
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1394G>A
  hgvsp: ENSP00000406318.2:p.Arg465Lys
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6664
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg465Lys
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 21090
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1950
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-52888227-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888227
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888227
    reference: chr 19
allele count: 1
allele frequency: 2.472187886279357e-5
allele num: 40450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1394G>T
  hgvsp: ENSP00000406318.2:p.Arg465Ile
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25937
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg465Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 4.74158368895211e-5
  allele num: 21090
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2660
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-52888232-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888232
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888232
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 39338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1399G>T
  hgvsp: ENSP00000406318.2:p.Asp467Tyr
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8362
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp467Tyr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1850
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9012
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS

19-52888241-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888241
    reference: chr 19
allele count: 1
allele frequency: 2.459782555222118e-5
allele num: 40654
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1408G>C
  hgvsp: ENSP00000406318.2:p.Gly470Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly470Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2570
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 386
  num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

19-52888241-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888241
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 40654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1408G>T
  hgvsp: ENSP00000406318.2:p.Gly470Cys
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26633
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13304
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6021
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly470Cys
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 386
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2570
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

19-52888245-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888245
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888245
    reference: chr 19
allele count: 19601
allele frequency: 4.501837390904915e-1
allele num: 43540
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1412A>G
  hgvsp: ENSP00000406318.2:p.Lys471Arg
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.25e1
  variant carriers: 530
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 533
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.5e0
  variant carriers: 1973
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 615
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 9.75e1
  variant carriers: 1186
genotype depth: GenotypeDepth
  all individuals: 25212
  bin: 7.5e0
  variant carriers: 11541
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 1.25e1
  variant carriers: 6254
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 588
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.25e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 629
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.75e1
  variant carriers: 1643
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 549
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 598
genotype quality: GenotypeQuality
  all individuals: 6452
  bin: 2.5e0
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 1.75e1
  variant carriers: 2119
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 9.25e1
  variant carriers: 1079
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.75e1
  variant carriers: 333
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 6.75e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.75e1
  variant carriers: 468
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 1.25e1
  variant carriers: 976
genotype quality: GenotypeQuality
  all individuals: 10373
  bin: 2.25e1
  variant carriers: 1955
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.25e1
  variant carriers: 477
genotype quality: GenotypeQuality
  all individuals: 6501
  bin: 7.5e0
  variant carriers: 717
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 6.25e1
  variant carriers: 622
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.25e1
  variant carriers: 237
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.25e1
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.75e1
  variant carriers: 1044
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.75e1
  variant carriers: 628
genotype quality: GenotypeQuality
  all individuals: 16112
  bin: 9.75e1
  variant carriers: 15617
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.75e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 3.25e1
  variant carriers: 936
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.75e1
  variant carriers: 792
hgvs: p.Lys471Arg
num of homozygotes: 3939
population: Latino
  type: Population
  allele count: 770
  allele frequency: 4.466357308584687e-1
  allele num: 1724
  num of homozygotes: 124
population: South Asian
  type: Population
  allele count: 5134
  allele frequency: 5.392857142857143e-1
  allele num: 9520
  num of homozygotes: 1388
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

19-52888246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888246
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888246
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 41622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1413G>A
  hgvsp: ENST00000422689.2:c.1413G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25432
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6681
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys471Lys
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 394
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2362
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-52888247-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888247
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888247
    reference: chr 19
allele count: 1
allele frequency: 3.008242584682029e-5
allele num: 33242
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1414G>C
  hgvsp: ENSP00000406318.2:p.Asp472His
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25843
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11939
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp472His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8658
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1424
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-52888248-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888248
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888248
    reference: chr 19
allele count: 1
allele frequency: 3.105011488542508e-5
allele num: 32206
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1415A>C
  hgvsp: ENSP00000406318.2:p.Asp472Ala
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp472Ala
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8504
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1400
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-52888256-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52888256
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 52888256
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 33062
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221923
  ensembl protein: ENSP00000406318
  ensembl transcript: ENST00000422689
  gene symbol: ZNF880
  hgvsc: ENST00000422689.2:c.1423C>A
  hgvsp: ENST00000422689.2:c.1423C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37249
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg475Arg
num of homozygotes: 0
reference allele: C

European (Non-Finnish)
type: Population
allele count: 7994
allele frequency: 1.246491611052205e-1
allele num: 64132
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 912
allele frequency: 1.426337191116672e-1
allele num: 6394
num of homozygotes: 0

Latino
type: Population
allele count: 1212
allele frequency: 1.091301998919503e-1
allele num: 11106
num of homozygotes: 0

Other
type: Population
allele count: 100
allele frequency: 1.149425287356322e-1
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 875
allele frequency: 1.041914741605144e-1
allele num: 8398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.066e-1

QD
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -2.334e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

FS
type: SiteQuality
SIO_000300: 7.3062e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

DP
type: SiteQuality
SIO_000300: 1.936199e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.34e1

VQSLOD
type: SiteQuality
SIO_000300: -4.416e0

East Asian
type: Population
allele count: 8
allele frequency: 9.526077637532746e-4
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.2605798667387e-3
allele num: 11106
num of homozygotes: 0

South Asian
type: Population
allele count: 33
allele frequency: 2.098168870803662e-3
allele num: 15728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.658742571160463e-3
allele num: 6394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.334e0

FS
type: SiteQuality
SIO_000300: 7.3062e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.066e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.34e1

DP
type: SiteQuality
SIO_000300: 1.936199e6

VQSLOD
type: SiteQuality
SIO_000300: -4.416e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 1.18e0

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.127932436659368e-3
allele num: 6394
num of homozygotes: 0

South Asian
type: Population
allele count: 72
allele frequency: 4.577822990844354e-3
allele num: 15728
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.143367468444868e-3
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 53
allele frequency: 4.772195209796506e-3
allele num: 11106
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.597701149425287e-3
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.3062e1

DP
type: SiteQuality
SIO_000300: 1.936199e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.066e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.334e0

VQSLOD
type: SiteQuality
SIO_000300: -4.416e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

Latino
type: Population
allele count: 1
allele frequency: 9.004141905276428e-5
allele num: 11106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.338925965196782e-4
allele num: 64132
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.381519409383186e-4
allele num: 8398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.226845076311938e-4
allele num: 9566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.066e-1

DP
type: SiteQuality
SIO_000300: 1.936199e6

FS
type: SiteQuality
SIO_000300: 7.3062e1

MQRankSum
type: SiteQuality
SIO_000300: -2.334e0

VQSLOD
type: SiteQuality
SIO_000300: -4.416e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

MQ
type: SiteQuality
SIO_000300: 5.34e1

QD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.38060525734482e-4
allele num: 36216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.241002730206007e-4
allele num: 8058
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.372681281618887e-4
allele num: 5930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e0

MQ
type: SiteQuality
SIO_000300: 5.511e1

DP
type: SiteQuality
SIO_000300: 1.95846e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.237e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.592e0

FS
type: SiteQuality
SIO_000300: 5.6287e1

QD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

VQSLOD
type: SiteQuality
SIO_000300: -2.977e0

Latino
type: Population
allele count: 17
allele frequency: 2.645502645502645e-3
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 3.541315345699831e-3
allele num: 5930
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.008032128514056e-3
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 3.84710846363862e-3
allele num: 8058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 181
allele frequency: 4.997791031588248e-3
allele num: 36216
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.592e0

VQSLOD
type: SiteQuality
SIO_000300: -2.977e0

DP
type: SiteQuality
SIO_000300: 1.95846e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

QD
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 5.6287e1

MQ
type: SiteQuality
SIO_000300: 5.511e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.237e-1

South Asian
type: Population
allele count: 420
allele frequency: 5.212211466865227e-2
allele num: 8058
num of homozygotes: 0

African
type: Population
allele count: 157
allele frequency: 2.647554806070826e-2
allele num: 5930
num of homozygotes: 0

East Asian
type: Population
allele count: 133
allele frequency: 2.46570263255469e-2
allele num: 5394
num of homozygotes: 0

Other
type: Population
allele count: 16
allele frequency: 3.21285140562249e-2
allele num: 498
num of homozygotes: 0

Latino
type: Population
allele count: 243
allele frequency: 3.781512605042017e-2
allele num: 6426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.592e0

VQSLOD
type: SiteQuality
SIO_000300: -2.977e0

DP
type: SiteQuality
SIO_000300: 1.95846e6

QD
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.511e1

FS
type: SiteQuality
SIO_000300: 5.6287e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.237e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

East Asian
type: Population
allele count: 26
allele frequency: 3.074012768976117e-3
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 287
allele frequency: 4.475842924425314e-3
allele num: 64122
num of homozygotes: 0

South Asian
type: Population
allele count: 98
allele frequency: 6.316875080572386e-3
allele num: 15514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 3.568104250698108e-3
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 58
allele frequency: 5.228051198846223e-3
allele num: 11094
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.537e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.487e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.708e0

FS
type: SiteQuality
SIO_000300: 4.6469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 1.941008e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.26194339282495e-3
allele num: 11094
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.767519234768143e-3
allele num: 9618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 1.933813667695955e-3
allele num: 64122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.637294446168166e-3
allele num: 6446
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.487e0

FS
type: SiteQuality
SIO_000300: 4.6469e1

MQRankSum
type: SiteQuality
SIO_000300: -1.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.941008e6

MQ
type: SiteQuality
SIO_000300: 5.537e1

VQSLOD
type: SiteQuality
SIO_000300: -1.309e1

African
type: Population
allele count: 2
allele frequency: 2.070822116380203e-4
allele num: 9658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.593e0

MQ
type: SiteQuality
SIO_000300: 5.53e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.378e0

DP
type: SiteQuality
SIO_000300: 1.945151e6

MQRankSum
type: SiteQuality
SIO_000300: -1.905e0

FS
type: SiteQuality
SIO_000300: 4.2322e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

European (Non-Finnish)
type: Population
allele count: 146
allele frequency: 2.269194902082686e-3
allele num: 64340
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 2.06352054548717e-3
allele num: 11146
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 2.471424158171146e-3
allele num: 6474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.593e0

FS
type: SiteQuality
SIO_000300: 4.2322e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.53e1

DP
type: SiteQuality
SIO_000300: 1.945151e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.378e0

MQRankSum
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

Latino
type: Population
allele count: 580
allele frequency: 5.146406388642413e-2
allele num: 11270
num of homozygotes: 0

South Asian
type: Population
allele count: 891
allele frequency: 5.539666749564785e-2
allele num: 16084
num of homozygotes: 0

East Asian
type: Population
allele count: 457
allele frequency: 5.39423984891407e-2
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 461
allele frequency: 7.103235747303543e-2
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3846
allele frequency: 5.917287217674934e-2
allele num: 64996
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.461e0

FS
type: SiteQuality
SIO_000300: 7.438e1

VQSLOD
type: SiteQuality
SIO_000300: -6.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

MQ
type: SiteQuality
SIO_000300: 5.336e1

DP
type: SiteQuality
SIO_000300: 1.99806e6

QD
type: SiteQuality
SIO_000300: 2.49e0

European (Finnish)
type: Population
allele count: 61
allele frequency: 9.399075500770416e-3
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 220
allele frequency: 1.367818950509823e-2
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 827
allele frequency: 1.272385992984184e-2
allele num: 64996
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.1441647597254e-2
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 128
allele frequency: 1.135758651286602e-2
allele num: 11270
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.461e0

DP
type: SiteQuality
SIO_000300: 1.99806e6

MQ
type: SiteQuality
SIO_000300: 5.336e1

FS
type: SiteQuality
SIO_000300: 7.438e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.387e0

East Asian
type: Population
allele count: 117
allele frequency: 1.381019830028329e-2
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 118
allele frequency: 1.818181818181818e-2
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1123
allele frequency: 1.727798633762078e-2
allele num: 64996
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 1.37299771167048e-2
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 250
allele frequency: 1.554339716488436e-2
allele num: 16084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.461e0

QD
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 5.336e1

FS
type: SiteQuality
SIO_000300: 7.438e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

DP
type: SiteQuality
SIO_000300: 1.99806e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

East Asian
type: Population
allele count: 53
allele frequency: 6.25590179414542e-3
allele num: 8472
num of homozygotes: 0

Latino
type: Population
allele count: 92
allele frequency: 8.16326530612245e-3
allele num: 11270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 88
allele frequency: 1.35593220338983e-2
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 141
allele frequency: 8.766476000994778e-3
allele num: 16084
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.99806e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

MQ
type: SiteQuality
SIO_000300: 5.336e1

VQSLOD
type: SiteQuality
SIO_000300: -6.387e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

FS
type: SiteQuality
SIO_000300: 7.438e1

MQRankSum
type: SiteQuality
SIO_000300: -2.461e0

QD
type: SiteQuality
SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

Other
type: Population
allele count: 2
allele frequency: 2.288329519450801e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 36
allele frequency: 5.546995377503852e-3
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 45
allele frequency: 2.797811489679184e-3
allele num: 16084
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 2.360717658168083e-3
allele num: 8472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 263
allele frequency: 4.046402855560342e-3
allele num: 64996
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: -2.461e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 1.99806e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.387e0

FS
type: SiteQuality
SIO_000300: 7.438e1

MQ
type: SiteQuality
SIO_000300: 5.336e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

South Asian
type: Population
allele count: 57
allele frequency: 3.543894553593633e-3
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 264
allele frequency: 4.061788417748785e-3
allele num: 64996
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.576659038901602e-3
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 58
allele frequency: 5.146406388642413e-3
allele num: 11270
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 4.485363550519358e-3
allele num: 8472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

DP
type: SiteQuality
SIO_000300: 1.99806e6

QD
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -6.387e0

MQRankSum
type: SiteQuality
SIO_000300: -2.461e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

FS
type: SiteQuality
SIO_000300: 7.438e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.336e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.465587993903154e-4
allele num: 34116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.443e0

FS
type: SiteQuality
SIO_000300: 7.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.445e0

MQRankSum
type: SiteQuality
SIO_000300: -1.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

DP
type: SiteQuality
SIO_000300: 1.996799e6

MQ
type: SiteQuality
SIO_000300: 5.504e1

QD
type: SiteQuality
SIO_000300: 2.56e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.348435814455232e-4
allele num: 7416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.771450557906887e-4
allele num: 5198
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.996799e6

MQRankSum
type: SiteQuality
SIO_000300: -1.174e0

VQSLOD
type: SiteQuality
SIO_000300: -4.443e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

FS
type: SiteQuality
SIO_000300: 7.338e1

QD
type: SiteQuality
SIO_000300: 2.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.445e0

MQ
type: SiteQuality
SIO_000300: 5.504e1

East Asian
type: Population
allele count: 1
allele frequency: 1.923816852635629e-4
allele num: 5198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.758087201125176e-4
allele num: 5688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.931175987806308e-5
allele num: 34116
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.996799e6

VQSLOD
type: SiteQuality
SIO_000300: -4.443e0

FS
type: SiteQuality
SIO_000300: 7.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.445e0

QD
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 5.504e1

East Asian
type: Population
allele count: 24
allele frequency: 4.61716044632551e-3
allele num: 5198
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 5.479907007638658e-3
allele num: 6022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 215
allele frequency: 6.302028373783562e-3
allele num: 34116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 8.233058898036731e-3
allele num: 3158
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.132231404958678e-3
allele num: 484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.445e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.174e0

DP
type: SiteQuality
SIO_000300: 1.996799e6

QD
type: SiteQuality
SIO_000300: 2.56e0

FS
type: SiteQuality
SIO_000300: 7.338e1

MQ
type: SiteQuality
SIO_000300: 5.504e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

Latino
type: Population
allele count: 233
allele frequency: 2.094946951987053e-2
allele num: 11122
num of homozygotes: 0

African
type: Population
allele count: 181
allele frequency: 1.869834710743802e-2
allele num: 9680
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 2.059496567505721e-2
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1488
allele frequency: 2.303976217019695e-2
allele num: 64584
num of homozygotes: 0

South Asian
type: Population
allele count: 356
allele frequency: 2.235900012561236e-2
allele num: 15922
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.014398e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 7.810899999999999e1

MQ
type: SiteQuality
SIO_000300: 5.356e1

QD
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -7.188e0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

European (Non-Finnish)
type: Population
allele count: 343
allele frequency: 5.310912919608572e-3
allele num: 64584
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.305785123966942e-3
allele num: 9680
num of homozygotes: 0

South Asian
type: Population
allele count: 81
allele frequency: 5.087300590378093e-3
allele num: 15922
num of homozygotes: 0

East Asian
type: Population
allele count: 44
allele frequency: 5.223171889838557e-3
allele num: 8424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 36
allele frequency: 5.612722170252572e-3
allele num: 6414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 7.810899999999999e1

VQSLOD
type: SiteQuality
SIO_000300: -7.188e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.356e1

DP
type: SiteQuality
SIO_000300: 2.014398e6

QD
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

Latino
type: Population
allele count: 77
allele frequency: 6.923215249055925e-3
allele num: 11122
num of homozygotes: 0

East Asian
type: Population
allele count: 49
allele frequency: 5.816714150047484e-3
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 473
allele frequency: 7.323795367273628e-3
allele num: 64584
num of homozygotes: 0

South Asian
type: Population
allele count: 97
allele frequency: 6.092199472428087e-3
allele num: 15922
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.188e0

DP
type: SiteQuality
SIO_000300: 2.014398e6

FS
type: SiteQuality
SIO_000300: 7.810899999999999e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.356e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

QD
type: SiteQuality
SIO_000300: 2.29e0

South Asian
type: Population
allele count: 76
allele frequency: 4.77326968973747e-3
allele num: 15922
num of homozygotes: 0

African
type: Population
allele count: 48
allele frequency: 4.958677685950414e-3
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 52
allele frequency: 8.107265357031494e-3
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 479
allele frequency: 7.416697634088938e-3
allele num: 64584
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.720823798627002e-3
allele num: 874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e0

FS
type: SiteQuality
SIO_000300: 7.810899999999999e1

DP
type: SiteQuality
SIO_000300: 2.014398e6

MQ
type: SiteQuality
SIO_000300: 5.356e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -7.188e0

QD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

Other
type: Population
allele count: 6
allele frequency: 6.864988558352402e-3
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 37
allele frequency: 4.392212725546059e-3
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.69735659054127e-3
allele num: 11122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 306
allele frequency: 4.738015607580825e-3
allele num: 64584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

FS
type: SiteQuality
SIO_000300: 7.810899999999999e1

VQSLOD
type: SiteQuality
SIO_000300: -7.188e0

DP
type: SiteQuality
SIO_000300: 2.014398e6

MQ
type: SiteQuality
SIO_000300: 5.356e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

QD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

Latino
type: Population
allele count: 16
allele frequency: 1.43859018162201e-3
allele num: 11122
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.432494279176201e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 5.924540068599937e-3
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 155
allele frequency: 2.399975226062183e-3
allele num: 64584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

DP
type: SiteQuality
SIO_000300: 2.014398e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

FS
type: SiteQuality
SIO_000300: 7.810899999999999e1

QD
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: -7.188e0

MQ
type: SiteQuality
SIO_000300: 5.356e1

East Asian
type: Population
allele count: 33
allele frequency: 6.095308459549317e-3
allele num: 5414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 45
allele frequency: 1.349730053989202e-2
allele num: 3334
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 7.8125e-3
allele num: 512
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 5.716207128446536e-3
allele num: 5948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 305
allele frequency: 8.409153570443893e-3
allele num: 36270
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.329e1

FS
type: SiteQuality
SIO_000300: 8.0327e1

DP
type: SiteQuality
SIO_000300: 2.013006e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.616e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.605e0

VQSLOD
type: SiteQuality
SIO_000300: -4.976e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

Latino
type: Population
allele count: 74
allele frequency: 1.153726223885251e-2
allele num: 6414
num of homozygotes: 0

African
type: Population
allele count: 48
allele frequency: 8.069939475453935e-3
allele num: 5948
num of homozygotes: 0

East Asian
type: Population
allele count: 55
allele frequency: 1.015884743258219e-2
allele num: 5414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 55
allele frequency: 1.649670065986803e-2
allele num: 3334
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.171875e-2
allele num: 512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.616e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.976e0

MQRankSum
type: SiteQuality
SIO_000300: -2.605e0

QD
type: SiteQuality
SIO_000300: 3.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 2.013006e6

MQ
type: SiteQuality
SIO_000300: 5.329e1

FS
type: SiteQuality
SIO_000300: 8.0327e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

European (Non-Finnish)
type: Population
allele count: 320
allele frequency: 8.822718500137855e-3
allele num: 36270
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 6.388702084734364e-3
allele num: 5948
num of homozygotes: 0

East Asian
type: Population
allele count: 41
allele frequency: 7.572958995197636e-3
allele num: 5414
num of homozygotes: 0

Latino
type: Population
allele count: 48
allele frequency: 7.483629560336763e-3
allele num: 6414
num of homozygotes: 0

South Asian
type: Population
allele count: 96
allele frequency: 1.158301158301158e-2
allele num: 8288
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.4e0

FS
type: SiteQuality
SIO_000300: 8.0327e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.616e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.976e0

MQ
type: SiteQuality
SIO_000300: 5.329e1

MQRankSum
type: SiteQuality
SIO_000300: -2.605e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

DP
type: SiteQuality
SIO_000300: 2.013006e6

South Asian
type: Population
allele count: 116
allele frequency: 1.3996138996139e-2
allele num: 8288
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 7.8125e-3
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 356
allele frequency: 9.815274331403364e-3
allele num: 36270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 8.398320335932814e-3
allele num: 3334
num of homozygotes: 0

East Asian
type: Population
allele count: 39
allele frequency: 7.203546361285556e-3
allele num: 5414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.329e1

VQSLOD
type: SiteQuality
SIO_000300: -4.976e0

MQRankSum
type: SiteQuality
SIO_000300: -2.605e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
type: SiteQuality
SIO_000300: 8.0327e1

DP
type: SiteQuality
SIO_000300: 2.013006e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.616e-1

QD
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

African
type: Population
allele count: 2
allele frequency: 3.362474781439139e-4
allele num: 5948
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.652509652509653e-4
allele num: 8288
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 7.444168734491315e-4
allele num: 36270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.998800239952009e-4
allele num: 3334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.0327e1

VQSLOD
type: SiteQuality
SIO_000300: -4.976e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

DP
type: SiteQuality
SIO_000300: 2.013006e6

MQRankSum
type: SiteQuality
SIO_000300: -2.605e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.616e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.329e1

African
type: Population
allele count: 104
allele frequency: 1.859799713876967e-2
allele num: 5592
num of homozygotes: 0

South Asian
type: Population
allele count: 234
allele frequency: 3.036594861147158e-2
allele num: 7706
num of homozygotes: 0

East Asian
type: Population
allele count: 92
allele frequency: 1.786407766990291e-2
allele num: 5150
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 2.653061224489796e-2
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 724
allele frequency: 2.146202644216517e-2
allele num: 33734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.71e-2

FS
type: SiteQuality
SIO_000300: 5.8012e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.478e0

DP
type: SiteQuality
SIO_000300: 2.046342e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.48e1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e1

QD
type: SiteQuality
SIO_000300: 3.58e0

African
type: Population
allele count: 20
allele frequency: 3.57653791130186e-3
allele num: 5592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 6.514657980456026e-3
allele num: 3070
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 3.689320388349515e-3
allele num: 5150
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 5.580067479885803e-3
allele num: 7706
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 3.465346534653465e-3
allele num: 6060
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.58e0

MQRankSum
type: SiteQuality
SIO_000300: -2.255e0

MQ
type: SiteQuality
SIO_000300: 5.48e1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 5.8012e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.478e0

DP
type: SiteQuality
SIO_000300: 2.046342e6

South Asian
type: Population
allele count: 4
allele frequency: 5.121638924455825e-4
allele num: 7810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 8.347245409015025e-4
allele num: 5990
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 8.0911e1

VQSLOD
type: SiteQuality
SIO_000300: -4.833e0

MQ
type: SiteQuality
SIO_000300: 5.195e1

DP
type: SiteQuality
SIO_000300: 2.051064e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.635e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.751e0

QD
type: SiteQuality
SIO_000300: 4.37e0

African
type: Population
allele count: 34
allele frequency: 5.937827453719874e-3
allele num: 5726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 305
allele frequency: 8.945855575761131e-3
allele num: 34094
num of homozygotes: 0

Latino
type: Population
allele count: 35
allele frequency: 5.843071786310518e-3
allele num: 5990
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 8.130081300813009e-3
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 6.457925636007828e-3
allele num: 5110
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.751e0

MQ
type: SiteQuality
SIO_000300: 5.195e1

DP
type: SiteQuality
SIO_000300: 2.051064e6

QD
type: SiteQuality
SIO_000300: 4.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 8.0911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.635e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.833e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

African
type: Population
allele count: 4
allele frequency: 6.985679357317499e-4
allele num: 5726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 4.106294362644453e-4
allele num: 34094
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.121638924455825e-4
allele num: 7810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3096
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.195e1

DP
type: SiteQuality
SIO_000300: 2.051064e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.635e-1

QD
type: SiteQuality
SIO_000300: 4.37e0

VQSLOD
type: SiteQuality
SIO_000300: -4.833e0

FS
type: SiteQuality
SIO_000300: 8.0911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.751e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.913894324853229e-4
allele num: 5110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 3.812987622455564e-4
allele num: 34094
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.560819462227913e-4
allele num: 7810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.635e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 8.0911e1

DP
type: SiteQuality
SIO_000300: 2.051064e6

MQ
type: SiteQuality
SIO_000300: 5.195e1

MQRankSum
type: SiteQuality
SIO_000300: -2.751e0

VQSLOD
type: SiteQuality
SIO_000300: -4.833e0

QD
type: SiteQuality
SIO_000300: 4.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

South Asian
type: Population
allele count: 56
allele frequency: 7.170294494238156e-3
allele num: 7810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 263
allele frequency: 7.713967266967795e-3
allele num: 34094
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 7.436399217221135e-3
allele num: 5110
num of homozygotes: 0

Latino
type: Population
allele count: 56
allele frequency: 9.348914858096828e-3
allele num: 5990
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 8.130081300813009e-3
allele num: 492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
type: SiteQuality
SIO_000300: -2.751e0

FS
type: SiteQuality
SIO_000300: 8.0911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.833e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.195e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.635e-1

DP
type: SiteQuality
SIO_000300: 2.051064e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

European (Finnish)
type: Population
allele count: 38
allele frequency: 1.193467336683417e-2
allele num: 3184
num of homozygotes: 0

Latino
type: Population
allele count: 56
allele frequency: 8.959999999999999e-3
allele num: 6250
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 5.518394648829431e-3
allele num: 5980
num of homozygotes: 0

South Asian
type: Population
allele count: 57
allele frequency: 6.831255992329818e-3
allele num: 8344
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 7.086907870197687e-3
allele num: 5362
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.451e0

DP
type: SiteQuality
SIO_000300: 2.014162e6

VQSLOD
type: SiteQuality
SIO_000300: -4.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-1

FS
type: SiteQuality
SIO_000300: 7.101000000000001e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.29e1

QD
type: SiteQuality
SIO_000300: 6.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

European (Non-Finnish)
type: Population
allele count: 263
allele frequency: 7.358289966985619e-3
allele num: 35742
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 7.092198581560284e-3
allele num: 5358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 1.194217473287241e-2
allele num: 3182
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 5.501833944648216e-3
allele num: 5998
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 8.130081300813009e-3
allele num: 492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.828e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

FS
type: SiteQuality
SIO_000300: 6.7782e1

MQ
type: SiteQuality
SIO_000300: 5.305e1

QD
type: SiteQuality
SIO_000300: 3.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.187e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 2.010368e6

Latino
type: Population
allele count: 56
allele frequency: 8.228034087569792e-3
allele num: 6806
num of homozygotes: 0

South Asian
type: Population
allele count: 57
allele frequency: 6.054811982154238e-3
allele num: 9414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 1.088825214899714e-2
allele num: 3490
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 7.49063670411985e-3
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 6.567576909782233e-3
allele num: 5786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.466500000000001e1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -2.372e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

DP
type: SiteQuality
SIO_000300: 2.001709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.022e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.741e1

European (Finnish)
type: Population
allele count: 11
allele frequency: 3.11262026032824e-3
allele num: 3534
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 4.479768786127168e-3
allele num: 6920
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 6.134969325153375e-4
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.697792869269949e-3
allele num: 5890
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 2.896152254861398e-3
allele num: 9668
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.609e0

DP
type: SiteQuality
SIO_000300: 1.986329e6

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

QD
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.79e-2

MQ
type: SiteQuality
SIO_000300: 5.658e1

European (Finnish)
type: Population
allele count: 12
allele frequency: 3.426613363792119e-3
allele num: 3502
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 4.319032536711776e-3
allele num: 6946
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 2.984153117925499e-3
allele num: 9718
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.719986240110079e-3
allele num: 5814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 1.929619661808765e-3
allele num: 39386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.269e0

QD
type: SiteQuality
SIO_000300: 3.019e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.486e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.83e-2

MQ
type: SiteQuality
SIO_000300: 5.645e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.609e0

DP
type: SiteQuality
SIO_000300: 1.976172e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.972632e6

FS
type: SiteQuality
SIO_000300: 3.289e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

QD
type: SiteQuality
SIO_000300: 2.1e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.288120080541827e-5
allele num: 43704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.631e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.679999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

DP
type: SiteQuality
SIO_000300: 1.93109e6

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.23e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530643482520051e-5
allele num: 65332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e0

MQ
type: SiteQuality
SIO_000300: 5.496e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 1.338e1

DP
type: SiteQuality
SIO_000300: 1.910193e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 1.874494e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.35e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

QD
type: SiteQuality
SIO_000300: 1.903e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11858
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
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African
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allele count: 1
allele frequency: 1.349892008639309e-4
allele num: 7408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6734
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 1
allele frequency: 1.547987616099071e-4
allele num: 6460
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
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European (Non-Finnish)
type: Population
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allele frequency: 3.119054302735411e-5
allele num: 64122
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.836e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

DP
type: SiteQuality
SIO_000300: 1.759813e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.67e1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8552
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5568
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.769848854907791e-5
allele num: 56502
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MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e0

QD
type: SiteQuality
SIO_000300: 3.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.835270768358378e-4
allele num: 7054
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51088
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5114
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12900
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MQRankSum
type: SiteQuality
SIO_000300: -1.602e0

MQ
type: SiteQuality
SIO_000300: 5.531e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e0

QD
type: SiteQuality
SIO_000300: 1.147e1

DP
type: SiteQuality
SIO_000300: 1.72044e6

VQSLOD
type: SiteQuality
SIO_000300: -3.947e0

FS
type: SiteQuality
SIO_000300: 4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
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South Asian
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allele count: 0
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allele num: 13348
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QD
type: SiteQuality
SIO_000300: 1.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.592e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.45e1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 4.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.632448e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.731301939058172e-5
allele num: 57760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14648
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5934
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.322e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.474e0

VQSLOD
type: SiteQuality
SIO_000300: -2.261e0

QD
type: SiteQuality
SIO_000300: 6.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

DP
type: SiteQuality
SIO_000300: 1.414356e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.782340569636046e-5
allele num: 56106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

QD
type: SiteQuality
SIO_000300: 6.49e0

MQRankSum
type: SiteQuality
SIO_000300: -2.947e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 3.463e0

MQ
type: SiteQuality
SIO_000300: 5.011e1

DP
type: SiteQuality
SIO_000300: 1.358959e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.156e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.356186395286556e-5
allele num: 56010
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.373e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQ
type: SiteQuality
SIO_000300: 5.543e1

VQSLOD
type: SiteQuality
SIO_000300: -2.151e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e0

QD
type: SiteQuality
SIO_000300: 1.511e1

DP
type: SiteQuality
SIO_000300: 1.358505e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5922
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.76166804750069e-5
allele num: 36210
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 1.209919e6

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.692e0

FS
type: SiteQuality
SIO_000300: 9.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

South Asian
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allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.918515059537707e-5
allele num: 34264
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3924
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.892e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.46e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.14356e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46226
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Latino
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allele count: 0
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African
type: Population
allele count: 0
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South Asian
type: Population
allele count: 3
allele frequency: 2.333177788147457e-4
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Other
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allele count: 0
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQ
type: SiteQuality
SIO_000300: 5.739e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

Other
type: Population
allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5052
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.44542447629548e-5
allele num: 29024
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Latino
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allele count: 0
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South Asian
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allele count: 0
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.435e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31566
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 532
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Latino
type: Population
allele count: 0
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allele num: 3800
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African
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allele count: 1
allele frequency: 1.862891207153502e-4
allele num: 5368
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East Asian
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MQ
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 1.824e0

Latino
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Other
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allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
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South Asian
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allele count: 0
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DP
type: SiteQuality
SIO_000300: 1.068228e6

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.320000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.51e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
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South Asian
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allele count: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4944
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40834
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African
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allele frequency: 3.090234857849196e-4
allele num: 6472
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MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

FS
type: SiteQuality
SIO_000300: 1.361e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.721e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

DP
type: SiteQuality
SIO_000300: 1.040695e6

MQ
type: SiteQuality
SIO_000300: 4.562e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3180
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3306
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4882
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.501645773513551e-5
allele num: 28558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.63e-2

DP
type: SiteQuality
SIO_000300: 9.98386e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 2.988e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 1.518e1

African
type: Population
allele count: 0
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Other
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3268
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3412
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3146
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.257e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3510
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.889287738522577e-4
allele num: 10586
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30676
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.41861e5

QD
type: SiteQuality
SIO_000300: 2.591e1

MQRankSum
type: SiteQuality
SIO_000300: -1.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.501e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

European (Finnish)
type: Population
allele count: 1337
allele frequency: 3.983909415971394e-1
allele num: 3356
num of homozygotes: 218

South Asian
type: Population
allele count: 5541
allele frequency: 5.347423277359583e-1
allele num: 10362
num of homozygotes: 1467

Latino
type: Population
allele count: 1023
allele frequency: 4.092e-1
allele num: 2500
num of homozygotes: 147

Other
type: Population
allele count: 184
allele frequency: 3.817427385892116e-1
allele num: 482
num of homozygotes: 28

European (Non-Finnish)
type: Population
allele count: 12072
allele frequency: 4.190211732037487e-1
allele num: 28810
num of homozygotes: 2050

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 2.456e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
SIO_000300: 1.001878e6

MQ
type: SiteQuality
SIO_000300: 5.58e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.953e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.692e1

QD
type: SiteQuality
SIO_000300: 1.105e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 4.84e0

DP
type: SiteQuality
SIO_000300: 9.38848e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.397e0

FS
type: SiteQuality
SIO_000300: 4.072e0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.97e-1

DP
type: SiteQuality
SIO_000300: 9.33435e5

QD
type: SiteQuality
SIO_000300: 1.511e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.090000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.963e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.32e-2

DP
type: SiteQuality
SIO_000300: 9.11607e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.682e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.32e-2

FS
type: SiteQuality
SIO_000300: 3.963e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 9.11607e5

QD
type: SiteQuality
SIO_000300: 1.682e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1284
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.04822e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.288e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

QD
type: SiteQuality
SIO_000300: 8.94e0

MQ
type: SiteQuality
SIO_000300: 4.85e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.71120324130783e-5
allele num: 21226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3916
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.996e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

FS
type: SiteQuality
SIO_000300: 1.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 9.0188e5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.996e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 1.987e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 9.0188e5

East Asian
type: Population
allele count: 805
allele frequency: 3.793590951932139e-1
allele num: 2122
num of homozygotes: 116

Other
type: Population
allele count: 154
allele frequency: 3.908629441624366e-1
allele num: 394
num of homozygotes: 26

African
type: Population
allele count: 1661
allele frequency: 4.017900338655055e-1
allele num: 4134
num of homozygotes: 287

European (Finnish)
type: Population
allele count: 1106
allele frequency: 4.186222558667676e-1
allele num: 2642
num of homozygotes: 193

European (Non-Finnish)
type: Population
allele count: 9971
allele frequency: 4.334463571552774e-1
allele num: 23004
num of homozygotes: 1805

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.48e-2

QD
type: SiteQuality
SIO_000300: 2.088e1

FS
type: SiteQuality
SIO_000300: 2.419e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.023468e6

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

DP
type: SiteQuality
SIO_000300: 7.37968e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.019020103527146e-5
allele num: 16614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 1.129e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.346e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 8.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 7.24123e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.04602510460251e-3
allele num: 956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 7.22157e5

VQSLOD
type: SiteQuality
SIO_000300: -2.496e1

FS
type: SiteQuality
SIO_000300: 7.317400000000001e1

QD
type: SiteQuality
SIO_000300: 2.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.785e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1