X-32584049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24032584049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24032584049
    reference: chr 0
allele count: 1
allele frequency: 1.887112905965164e-5
allele num: 52991
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198947
  ensembl protein: ENSP00000388559
  ensembl transcript: ENST00000448370
  gene symbol: DMD
  hgvsc: ENST00000448370.1:c.94-201222G>A
  variant of: http://identifiers.org/hgnc/2928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198947
  ensembl protein: ENSP00000367948
  ensembl transcript: ENST00000378677
  gene symbol: DMD
  hgvsc: ENST00000378677.2:c.1801-51G>A
  variant of: http://identifiers.org/hgnc/2928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198947
  ensembl protein: ENSP00000354923
  ensembl transcript: ENST00000357033
  gene symbol: DMD
  hgvsc: ENST00000357033.4:c.1813-51G>A
  variant of: http://identifiers.org/hgnc/2928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198947
  ensembl transcript: ENST00000488902
  gene symbol: DMD
  hgvsc: ENST00000488902.1:n.336-348869G>A
  variant of: http://identifiers.org/hgnc/2928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198947
  ensembl protein: ENSP00000399897
  ensembl transcript: ENST00000420596
  gene symbol: DMD
  hgvsc: ENST00000420596.1:c.94-200733G>A
  variant of: http://identifiers.org/hgnc/2928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198947
  ensembl protein: ENSP00000288447
  ensembl transcript: ENST00000288447
  gene symbol: DMD
  hgvsc: ENST00000288447.4:c.1789-51G>A
  variant of: http://identifiers.org/hgnc/2928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13120
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8641
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

22-42525124-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525124
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525124
    reference: chr 22
allele count: 2
allele frequency: 1.780848752515449e-5
allele num: 112306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1140T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-178T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4557A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.416T>C
  hgvsp: ENSP00000374620.3:p.Leu139Ser
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-178T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.416T>C
  hgvsp: ENSP00000353820.5:p.Leu139Ser
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3712A>G
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu139Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-42525132-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525132
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525132
    reference: chr 22
allele count: 52148
allele frequency: 4.514743822831714e-1
allele num: 115506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.408C>G
  hgvsp: ENST00000389970.3:c.408C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3720G>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.408C>G
  hgvsp: ENST00000360608.5:c.408C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-186C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-186C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4565G>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1132C>G
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.75e1
  variant carriers: 3261
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 5.75e1
  variant carriers: 1968
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 3638
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.75e1
  variant carriers: 1015
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 726
genotype depth: GenotypeDepth
  all individuals: 8369
  bin: 2.75e1
  variant carriers: 3861
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.25e1
  variant carriers: 1222
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 1382
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 7.5e0
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.75e1
  variant carriers: 2214
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 4.25e1
  variant carriers: 4030
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.75e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.75e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 2.25e1
  variant carriers: 3080
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 5.25e1
  variant carriers: 2701
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 3.75e1
  variant carriers: 4563
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 3.25e1
  variant carriers: 4540
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 4.75e1
  variant carriers: 459
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 8.25e1
  variant carriers: 671
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.5e0
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.75e1
  variant carriers: 384
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.25e1
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 206
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 3.75e1
  variant carriers: 376
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 9.25e1
  variant carriers: 698
hgvs: p.Val136Val
num of homozygotes: 12707
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

22-42525134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525134
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525134
    reference: chr 22
allele count: 958
allele frequency: 8.290496218218322e-3
allele num: 115554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3722C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-188G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4567C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1130G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.406G>A
  hgvsp: ENSP00000374620.3:p.Val136Ile
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.406G>A
  hgvsp: ENSP00000353820.5:p.Val136Ile
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-188G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 16779
  bin: 2.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 20175
  bin: 2.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 3.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 3.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 4.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 9.75e1
  variant carriers: 844
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Val136Ile
num of homozygotes: 73
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-42525135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525135
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525135
    reference: chr 22
allele count: 5
allele frequency: 4.326981324748602e-5
allele num: 115554
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.405C>T
  hgvsp: ENST00000360608.5:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4568G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-189C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-189C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.405C>T
  hgvsp: ENST00000389970.3:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1129C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3723G>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9817
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser135Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

22-42525136-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525136
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525136
    reference: chr 22
allele count: 7
allele frequency: 6.056935190793458e-5
allele num: 115570
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.404C>T
  hgvsp: ENSP00000353820.5:p.Ser135Phe
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4569G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-190C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1128C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-190C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.404C>T
  hgvsp: ENSP00000374620.3:p.Ser135Phe
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3724G>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20480
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser135Phe
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

22-42525145-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525145
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525145
    reference: chr 22
allele count: 1
allele frequency: 8.690211345939933e-6
allele num: 115072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1119G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-199G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.395G>C
  hgvsp: ENSP00000374620.3:p.Arg132Thr
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4578C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3733C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.395G>C
  hgvsp: ENSP00000353820.5:p.Arg132Thr
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-199G>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg132Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

22-42525147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525147
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525147
    reference: chr 22
allele count: 1
allele frequency: 8.703371686191231e-6
allele num: 114898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.393G>A
  hgvsp: ENST00000360608.5:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4580C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3735C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-201G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.393G>A
  hgvsp: ENST00000389970.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1117G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-201G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln131Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-42525150-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525150
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525150
    reference: chr 22
allele count: 1
allele frequency: 8.719155985700584e-6
allele num: 114690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-204G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.390G>T
  hgvsp: ENSP00000374620.3:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.390G>T
  hgvsp: ENSP00000353820.5:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-204G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1114G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3738C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4583C>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu130Asp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

22-42525150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525150
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525150
    reference: chr 22
allele count: 1
allele frequency: 8.719155985700584e-6
allele num: 114690
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.390G>A
  hgvsp: ENST00000360608.5:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1114G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.390G>A
  hgvsp: ENST00000389970.3:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-204G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4583C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-204G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3738C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu130Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

22-42525152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525152
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525152
    reference: chr 22
allele count: 1
allele frequency: 8.735150244584206e-6
allele num: 114480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-206G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-206G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3740C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.388G>A
  hgvsp: ENSP00000374620.3:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.388G>A
  hgvsp: ENSP00000353820.5:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4585C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1112G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu130Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

22-42525153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525153
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525153
    reference: chr 22
allele count: 1
allele frequency: 8.738814317673378e-6
allele num: 114432
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.387C>T
  hgvsp: ENST00000360608.5:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1111C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.387C>T
  hgvsp: ENST00000389970.3:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-207C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3741G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-207C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4586G>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg129Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

22-42525154-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525154
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525154
    reference: chr 22
allele count: 1
allele frequency: 8.738508860847985e-6
allele num: 114436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1110G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.386G>C
  hgvsp: ENSP00000374620.3:p.Arg129Pro
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.386G>C
  hgvsp: ENSP00000353820.5:p.Arg129Pro
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4587C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3742C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-208G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-208G>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg129Pro
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

22-42525154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525154
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525154
    reference: chr 22
allele count: 1
allele frequency: 8.738508860847985e-6
allele num: 114436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1110G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.386G>A
  hgvsp: ENSP00000374620.3:p.Arg129His
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.386G>A
  hgvsp: ENSP00000353820.5:p.Arg129His
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4587C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-208G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-208G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3742C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg129His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

22-42525158-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525158
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525158
    reference: chr 22
allele count: 5
allele frequency: 4.375678230125669e-5
allele num: 114268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1106T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-212T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.382T>C
  hgvsp: ENSP00000353820.5:p.Trp128Arg
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-212T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.382T>C
  hgvsp: ENSP00000374620.3:p.Trp128Arg
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3746A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4591A>G
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20374
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7958
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp128Arg
num of homozygotes: 1
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

22-42525159-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525159
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525159
    reference: chr 22
allele count: 2
allele frequency: 1.751098814506103e-5
allele num: 114214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-213G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.381G>C
  hgvsp: ENST00000360608.5:c.381G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4592C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-213G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3747C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.381G>C
  hgvsp: ENST00000389970.3:c.381G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1105G>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20365
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala127Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

22-42525159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525159
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525159
    reference: chr 22
allele count: 3
allele frequency: 2.626648221759154e-5
allele num: 114214
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.381G>A
  hgvsp: ENST00000360608.5:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3747C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.381G>A
  hgvsp: ENST00000389970.3:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-213G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-213G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4592C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1105G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala127Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

22-42525161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525161
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525161
    reference: chr 22
allele count: 4
allele frequency: 3.504099796762212e-5
allele num: 114152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-215G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.379G>A
  hgvsp: ENSP00000353820.5:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.379G>A
  hgvsp: ENSP00000374620.3:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3749C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4594C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1103G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-215G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala127Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

22-42525162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525162
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525162
    reference: chr 22
allele count: 3
allele frequency: 2.630517510478228e-5
allele num: 114046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.378C>T
  hgvsp: ENST00000360608.5:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4595G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-216C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-216C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3750G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.378C>T
  hgvsp: ENST00000389970.3:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1102C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro126Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/22-42525168-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525168
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525168
    reference: chr 22
allele count: 1
allele frequency: 8.7921363132814e-6
allele num: 113738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4601A>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.372T>G
  hgvsp: ENSP00000353820.5:p.Tyr124Ter
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.372T>G
  hgvsp: ENSP00000374620.3:p.Tyr124Ter
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-222T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-222T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1096T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3756A>C
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr124Ter
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

22-42525168-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525168
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525168
    reference: chr 22
allele count: 5
allele frequency: 4.3960681566407e-5
allele num: 113738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1096T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.372T>C
  hgvsp: ENST00000360608.5:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.372T>C
  hgvsp: ENST00000389970.3:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3756A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4601A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-222T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-222T>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr124Tyr
num of homozygotes: 1
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/22-42525172-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525172
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525172
    reference: chr 22
allele count: 2
allele frequency: 1.762052438680575e-5
allele num: 113504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.368G>T
  hgvsp: ENSP00000374620.3:p.Arg123Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1092G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-226G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4605C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3760C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.368G>T
  hgvsp: ENSP00000353820.5:p.Arg123Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-226G>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20228
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16833
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33776
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg123Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-42525172-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525172
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525172
    reference: chr 22
allele count: 1
allele frequency: 8.810262193402876e-6
allele num: 113504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-226G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3760C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.368G>A
  hgvsp: ENSP00000374620.3:p.Arg123His
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1092G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-226G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.368G>A
  hgvsp: ENSP00000353820.5:p.Arg123His
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4605C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg123His
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

22-42525173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525173
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525173
    reference: chr 22
allele count: 2
allele frequency: 1.762487221967641e-5
allele num: 113476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-227C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1091C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.367C>T
  hgvsp: ENSP00000353820.5:p.Arg123Cys
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4606G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3761G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.367C>T
  hgvsp: ENSP00000374620.3:p.Arg123Cys
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-227C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg123Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-42525174-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525174
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525174
    reference: chr 22
allele count: 1
allele frequency: 8.818031110013756e-6
allele num: 113404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1090G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4607C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-228G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.366G>T
  hgvsp: ENST00000360608.5:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-228G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.366G>T
  hgvsp: ENST00000389970.3:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3762C>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala122Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-42525174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525174
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525174
    reference: chr 22
allele count: 1
allele frequency: 8.818031110013756e-6
allele num: 113404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-228G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.366G>A
  hgvsp: ENST00000389970.3:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1090G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4607C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.366G>A
  hgvsp: ENST00000360608.5:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-228G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3762C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala122Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum

22-42525175-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525175
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525175
    reference: chr 22
allele count: 4
allele frequency: 3.530699431557392e-5
allele num: 113292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.365C>T
  hgvsp: ENSP00000374620.3:p.Ala122Val
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1089C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4608G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3763G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-229C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.365C>T
  hgvsp: ENSP00000353820.5:p.Ala122Val
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-229C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16633
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ala122Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

22-42525175-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525175
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525175
    reference: chr 22
allele count: 1
allele frequency: 8.82674857889348e-6
allele num: 113292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1089C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.365C>A
  hgvsp: ENSP00000353820.5:p.Ala122Glu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3763G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.365C>A
  hgvsp: ENSP00000374620.3:p.Ala122Glu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-229C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4608G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-229C>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala122Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/22-42525176-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525176
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525176
    reference: chr 22
allele count: 77
allele frequency: 6.812109630730576e-4
allele num: 113034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-230G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1088G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.364G>T
  hgvsp: ENSP00000374620.3:p.Ala122Ser
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.364G>T
  hgvsp: ENSP00000353820.5:p.Ala122Ser
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-230G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4609C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3764C>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9370
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20085
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7687
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala122Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

22-42525180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
allele count: 162
allele frequency: 1.435432135958461e-3
allele num: 112858
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.360C>T
  hgvsp: ENST00000360608.5:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3768G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.360C>T
  hgvsp: ENST00000389970.3:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-234C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-234C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1084C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4613G>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32848
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Phe120Phe
num of homozygotes: 6
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

22-42525180-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
allele count: 1
allele frequency: 8.860692197274451e-6
allele num: 112858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.360C>G
  hgvsp: ENSP00000374620.3:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-234C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4613G>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-234C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3768G>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.360C>G
  hgvsp: ENSP00000353820.5:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1084C>G
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe120Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

22-42525180-G-GAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525183
    reference: chr 22
allele count: 1
allele frequency: 8.860692197274451e-6
allele num: 112858
alternate allele: GAAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1081_1083dupGTT
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.357_359dupGTT
  hgvsp: ENSP00000374620.3:p.Val119_Phe120insLeu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-237_173-235dupGTT
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3770_1718+3772dupACA
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-237_353-235dupGTT
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.357_359dupGTT
  hgvsp: ENSP00000353820.5:p.Val119_Phe120insLeu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4615_1046+4617dupACA
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val119_Phe120insLeu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

22-42525180-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525180
    reference: chr 22
allele count: 1
allele frequency: 8.860692197274451e-6
allele num: 112858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.360C>A
  hgvsp: ENSP00000374620.3:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4613G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1084C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-234C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3768G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-234C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.360C>A
  hgvsp: ENSP00000353820.5:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe120Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-42525182-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525182
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525182
    reference: chr 22
allele count: 155
allele frequency: 1.376065340909091e-3
allele num: 112640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4615A>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.358T>A
  hgvsp: ENSP00000374620.3:p.Phe120Ile
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.358T>A
  hgvsp: ENSP00000353820.5:p.Phe120Ile
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1082T>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3770A>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-236T>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-236T>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20035
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16054
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe120Ile
num of homozygotes: 3
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-42525183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525183
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525183
    reference: chr 22
allele count: 1
allele frequency: 8.877840909090909e-6
allele num: 112640
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.357G>A
  hgvsp: ENST00000360608.5:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3771C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-237G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.357G>A
  hgvsp: ENST00000389970.3:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1081G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-237G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4616C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5021
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val119Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/22-42525185-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525185
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525185
    reference: chr 22
allele count: 1
allele frequency: 8.892524943532467e-6
allele num: 112454
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.355G>T
  hgvsp: ENSP00000353820.5:p.Val119Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-239G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.355G>T
  hgvsp: ENSP00000374620.3:p.Val119Leu
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4618C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3773C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-239G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1079G>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val119Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS

22-42525185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525185
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525185
    reference: chr 22
allele count: 3
allele frequency: 2.66775748305974e-5
allele num: 112454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3773C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-239G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.355G>A
  hgvsp: ENSP00000353820.5:p.Val119Met
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.355G>A
  hgvsp: ENSP00000374620.3:p.Val119Met
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1079G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-239G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4618C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val119Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

22-42525186-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525186
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525186
    reference: chr 22
allele count: 2
allele frequency: 1.779897833864336e-5
allele num: 112366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4619C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-240G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.354G>C
  hgvsp: ENST00000360608.5:c.354G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3774C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1078G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-240G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.354G>C
  hgvsp: ENST00000389970.3:c.354G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
hgvs: c.354G>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

22-42525186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525186
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525186
    reference: chr 22
allele count: 1
allele frequency: 8.899489169321681e-6
allele num: 112366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3774C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1078G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.354G>A
  hgvsp: ENST00000389970.3:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.354G>A
  hgvsp: ENST00000360608.5:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4619C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-240G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-240G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32806
  bin: 6.25e1
  variant carriers: 0
hgvs: c.354G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

22-42525188-C-CTGGGGGTGGGACGGGCACG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525188
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525207
    reference: chr 22
allele count: 2
allele frequency: 1.782976143779196e-5
allele num: 112172
alternate allele: CTGGGGGTGGGACGGGCACG
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
hgvs: c.353-20_353-2dupCGTGCCCGTCCCACCCCCA
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

22-42525190-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525190
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525190
    reference: chr 22
allele count: 4
allele frequency: 3.576218149307107e-5
allele num: 111850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-3C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-244C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-3C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-3C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4623G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-244C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3778G>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
hgvs: c.353-3C>A
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

22-42525192-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525192
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525192
    reference: chr 22
allele count: 1
allele frequency: 8.973921783297736e-6
allele num: 111434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-246C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-5C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-5C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-246C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-5C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3780G>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4625G>C
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
hgvs: c.353-5C>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS

22-42525192-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525192
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525192
    reference: chr 22
allele count: 1
allele frequency: 8.973921783297736e-6
allele num: 111434
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-5C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-246C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-5C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3780G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-246C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-5C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4625G>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 1
hgvs: c.353-5C>A
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

22-42525193-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525193
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525193
    reference: chr 22
allele count: 14
allele frequency: 1.256529465615969e-4
allele num: 111418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-6C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-6C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-247C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-247C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-6C>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3781G>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4626G>C
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14678
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31294
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
hgvs: c.353-6C>G
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

22-42525195-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525195
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525195
    reference: chr 22
allele count: 12
allele frequency: 1.079020249613351e-4
allele num: 111212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4628T>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-8A>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-249A>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-249A>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-8A>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3783T>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-8A>G
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14593
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 8.25e1
  variant carriers: 1
hgvs: c.353-8A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-42525198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525198
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525198
    reference: chr 22
allele count: 8
allele frequency: 7.211755160912287e-5
allele num: 110930
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-11C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-252C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3786G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-252C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-11C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-11C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4631G>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6784
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

22-42525201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525201
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525201
    reference: chr 22
allele count: 15
allele frequency: 1.359779534411487e-4
allele num: 110312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-14C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-255C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4634G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-255C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-14C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3789G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-14C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18096
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

22-42525203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525203
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525203
    reference: chr 22
allele count: 18
allele frequency: 1.63865775722375e-4
allele num: 109846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4636G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-257C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-16C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3791G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-257C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-16C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-16C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17503
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

22-42525203-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525203
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525203
    reference: chr 22
allele count: 3
allele frequency: 2.731096262039583e-5
allele num: 109846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-257C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-16C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3791G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-16C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4636G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-257C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-16C>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17503
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

22-42525204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525204
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525204
    reference: chr 22
allele count: 1
allele frequency: 9.094050672050345e-6
allele num: 109962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-17G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3792C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4637C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-258G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-258G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-17G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-17G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/22-42525206-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525206
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525206
    reference: chr 22
allele count: 3
allele frequency: 2.736227654140825e-5
allele num: 109640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-260G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3794C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-19G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-260G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-19G>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4639C>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-19G>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

22-42525206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525206
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525206
    reference: chr 22
allele count: 1
allele frequency: 9.120758847136081e-6
allele num: 109640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4639C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-19G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-260G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-19G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3794C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-260G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-19G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7803
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

22-42525210-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525210
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525210
    reference: chr 22
allele count: 5
allele frequency: 4.579425556858148e-5
allele num: 109184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4643C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-23G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-264G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-23G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-264G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-23G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3798C>G
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6276
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

22-42525210-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525210
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525210
    reference: chr 22
allele count: 1
allele frequency: 9.158851113716295e-6
allele num: 109184
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3798C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-23G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4643C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-264G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-23G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-23G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-264G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

22-42525211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525211
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525211
    reference: chr 22
allele count: 1
allele frequency: 9.172124080494561e-6
allele num: 109026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4644G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-24C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-265C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-24C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3799G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-265C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-24C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

22-42525212-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525212
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525212
    reference: chr 22
allele count: 1
allele frequency: 9.176163996402944e-6
allele num: 108978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4645C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-266G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-25G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-266G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-25G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-25G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3800C>G
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

22-42525213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525213
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525213
    reference: chr 22
allele count: 3
allele frequency: 2.755985080934095e-5
allele num: 108854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-26C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-26C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-267C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-267C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-26C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4646G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3801G>A
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

22-42525214-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525214
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525214
    reference: chr 22
allele count: 1
allele frequency: 9.178353770467728e-6
allele num: 108952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-27A>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4647T>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3802T>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-268A>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-268A>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-27A>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-27A>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

22-42525215-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525215
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525215
    reference: chr 22
allele count: 3
allele frequency: 2.76166804750069e-5
allele num: 108630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3803G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-28C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4648G>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-269C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-28C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-269C>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-28C>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

22-42525216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525216
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525216
    reference: chr 22
allele count: 1
allele frequency: 9.238899462296052e-6
allele num: 108238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-29C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-29C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4649G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-29C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3804G>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-270C>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-270C>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3651
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22662
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

22-42525218-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525218
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525218
    reference: chr 22
allele count: 2
allele frequency: 1.847233767433269e-5
allele num: 108270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4651C>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-31G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-31G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-272G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-31G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-272G>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3806C>G
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

22-42525218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525218
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525218
    reference: chr 22
allele count: 1
allele frequency: 9.236168837166344e-6
allele num: 108270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4651C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-31G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-272G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-272G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-31G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3806C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-31G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

22-42525226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525226
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525226
    reference: chr 22
allele count: 1
allele frequency: 9.343349403894308e-6
allele num: 107028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4659C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-39G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-280G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-39G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-280G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-39G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3814C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/22-42525227-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525227
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525227
    reference: chr 22
allele count: 66
allele frequency: 6.160969325840599e-4
allele num: 107126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-281T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3815A>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-40T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-40T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4660A>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-281T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-40T>G
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10993
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 9.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 16909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 3
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

22-42525227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525227
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525227
    reference: chr 22
allele count: 7
allele frequency: 6.534361406194574e-5
allele num: 107126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4660A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3815A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-281T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-281T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-40T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-40T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-40T>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10993
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

22-42525230-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525230
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525230
    reference: chr 22
allele count: 64
allele frequency: 6.006118733459712e-4
allele num: 106558
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3818A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-43T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-284T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4663A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-43T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-284T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-43T>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9243
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11092
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9699
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5067
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 3
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

22-42525233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525233
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525233
    reference: chr 22
allele count: 2
allele frequency: 1.888467131229581e-5
allele num: 105906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-287G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-46G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4666C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-46G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-46G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-287G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3821C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

22-42525235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525235
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525235
    reference: chr 22
allele count: 2
allele frequency: 1.926040061633282e-5
allele num: 103840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-289G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-48G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-48G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3823C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4668C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-48G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-289G>A
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/22-42525236-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525236
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525236
    reference: chr 22
allele count: 14
allele frequency: 1.357404642323877e-4
allele num: 103138
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-49T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4669A>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-49T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-49T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3824A>C
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-290T>G
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-290T>G
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13455
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5550
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

22-42525236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525236
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525236
    reference: chr 22
allele count: 1
allele frequency: 9.695747445170549e-6
allele num: 103138
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3824A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.353-49T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-49T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-290T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4669A>G
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-49T>C
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-290T>C
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13455
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

22-42525333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525333
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525333
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 11988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-387G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-146G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-146G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.352+50G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-387G>A
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3921C>T
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4766C>T
  variant of: http://identifiers.org/hgnc/45273
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30091
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

22-42525338-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42525338
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 42525338
    reference: chr 22
allele count: 1
allele frequency: 8.493290300662476e-5
allele num: 11774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353241
  ensembl transcript: ENST00000360124
  gene symbol: CYP2D6
  hgvsc: ENST00000360124.5:c.173-392A>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000439129
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000439129.1:n.1046+4771T>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000351927
  ensembl transcript: ENST00000359033
  gene symbol: CYP2D6
  hgvsc: ENST00000359033.4:c.353-392A>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000374620
  ensembl transcript: ENST00000389970
  gene symbol: CYP2D6
  hgvsc: ENST00000389970.3:c.352+45A>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237037
  ensembl transcript: ENST00000416037
  gene symbol: NDUFA6-AS1
  hgvsc: ENST00000416037.2:n.1718+3926T>A
  variant of: http://identifiers.org/hgnc/45273
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl protein: ENSP00000353820
  ensembl transcript: ENST00000360608
  gene symbol: CYP2D6
  hgvsc: ENST00000360608.5:c.353-151A>T
  variant of: http://identifiers.org/hgnc/2625
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100197
  ensembl transcript: ENST00000488442
  gene symbol: CYP2D6
  hgvsc: ENST00000488442.1:n.1077-151A>T
  variant of: http://identifiers.org/hgnc/2625
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 3081
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4834
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 629
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2767
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27117
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 413
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.581977794990963e-4
allele num: 3873
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5665
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.181e0

DP
type: SiteQuality
SIO_000300: 9.3455e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.099e-1

GenotypeQuality
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.25240562546262e-5
allele num: 10808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.199616122840691e-4
allele num: 8336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62140
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.525e1

DP
type: SiteQuality
SIO_000300: 1.708994e6

VQSLOD
type: SiteQuality
SIO_000300: -1.661e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeQuality
all individuals: 2340
bin: 6.75e1
variant carriers: 608

GenotypeQuality
all individuals: 663
bin: 5.25e1
variant carriers: 530

GenotypeQuality
all individuals: 1179
bin: 7.75e1
variant carriers: 638

GenotypeQuality
all individuals: 1521
bin: 2.25e1
variant carriers: 251

GenotypeQuality
all individuals: 514
bin: 3.25e1
variant carriers: 361

GenotypeQuality
all individuals: 13890
bin: 6.25e1
variant carriers: 599

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 424

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 230

GenotypeQuality
all individuals: 33358
bin: 9.75e1
variant carriers: 32880

GenotypeQuality
all individuals: 392
bin: 4.25e1
variant carriers: 308

East Asian
type: Population
allele count: 2393
allele frequency: 2.870681381957774e-1
allele num: 8336
num of homozygotes: 408

Latino
type: Population
allele count: 7021
allele frequency: 6.334355828220859e-1
allele num: 11084
num of homozygotes: 2274

Other
type: Population
allele count: 371
allele frequency: 4.293981481481481e-1
allele num: 864
num of homozygotes: 83

African
type: Population
allele count: 3169
allele frequency: 3.569497634602388e-1
allele num: 8878
num of homozygotes: 619

European (Finnish)
type: Population
allele count: 3142
allele frequency: 4.923221560639298e-1
allele num: 6382
num of homozygotes: 758

South Asian
type: Population
allele count: 7514
allele frequency: 4.630268671432093e-1
allele num: 16228
num of homozygotes: 1872

European (Non-Finnish)
type: Population
allele count: 28538
allele frequency: 4.477672827690087e-1
allele num: 63734
num of homozygotes: 6693

MQRankSum
type: SiteQuality
SIO_000300: -3.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

DP
type: SiteQuality
SIO_000300: 2.441913e6

FS
type: SiteQuality
SIO_000300: 3.272e0

QD
type: SiteQuality
SIO_000300: 1.659e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 4.713e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.88e-2

GenotypeQuality
all individuals: 631
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 175
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2963
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8058
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 32259
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 596
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 514
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 44
allele frequency: 3.927870023210141e-3
allele num: 11202
num of homozygotes: 2

East Asian
type: Population
allele count: 4
allele frequency: 4.763038818766373e-4
allele num: 8398
num of homozygotes: 0

African
type: Population
allele count: 888
allele frequency: 1.00634632819583e-1
allele num: 8824
num of homozygotes: 71

South Asian
type: Population
allele count: 4
allele frequency: 2.472493509704537e-4
allele num: 16178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.667419820498337e-4
allele num: 63732
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.586e1

QD
type: SiteQuality
SIO_000300: 1.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.339e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.618254e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.408316291751875e-4
allele num: 8802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.928571428571429e-5
allele num: 11200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.77e-1

DP
type: SiteQuality
SIO_000300: 1.599236e6

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

MQ
type: SiteQuality
SIO_000300: 4.893e1

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
all individuals: 3230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.472187886279357e-4
allele num: 16180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.704554008280015e-5
allele num: 63768
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
SIO_000300: 1.487e1

FS
type: SiteQuality
SIO_000300: 1.755e0

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

MQ
type: SiteQuality
SIO_000300: 4.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

DP
type: SiteQuality
SIO_000300: 1.59865e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 8073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.946144211844694e-5
allele num: 11178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.279e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 1.591287e6

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

MQ
type: SiteQuality
SIO_000300: 5.004e1

GenotypeQuality
all individuals: 727
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577585662901496e-5
allele num: 63388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: -9.465e-1

MQ
type: SiteQuality
SIO_000300: 5.358e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.589157e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 2917
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580427979896956e-5
allele num: 63274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.028e1

QD
type: SiteQuality
SIO_000300: 1.099e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.293e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.544e0

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 1.586694e6

FS
type: SiteQuality
SIO_000300: 6.885e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.962179602079225e-5
allele num: 11158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.885e0

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.544e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.293e0

DP
type: SiteQuality
SIO_000300: 1.586694e6

MQ
type: SiteQuality
SIO_000300: 4.028e1

GenotypeQuality
all individuals: 652
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583882412569691e-5
allele num: 63136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

MQ
type: SiteQuality
SIO_000300: 4.959e1

QD
type: SiteQuality
SIO_000300: 6.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

DP
type: SiteQuality
SIO_000300: 1.584094e6

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

GenotypeQuality
all individuals: 33399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584434515321482e-5
allele num: 63114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

FS
type: SiteQuality
SIO_000300: 4.052e0

DP
type: SiteQuality
SIO_000300: 1.583234e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.144e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.024e1

QD
type: SiteQuality
SIO_000300: 1.149e1

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7996
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584183511818009e-5
allele num: 63124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
type: SiteQuality
SIO_000300: 4.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

QD
type: SiteQuality
SIO_000300: 1.425e1

VQSLOD
type: SiteQuality
SIO_000300: -1.389e0

MQ
type: SiteQuality
SIO_000300: 5.178e1

DP
type: SiteQuality
SIO_000300: 1.583454e6

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.196554715578138e-5
allele num: 16138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63124
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.178e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.389e0

FS
type: SiteQuality
SIO_000300: 4.273e0

DP
type: SiteQuality
SIO_000300: 1.583454e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.857544517338331e-4
allele num: 8536
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63010
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.595e1

VQSLOD
type: SiteQuality
SIO_000300: -2.958e-1

FS
type: SiteQuality
SIO_000300: 7.562e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 1.579984e6

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.240387000744232e-4
allele num: 16124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62958
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.007e1

QD
type: SiteQuality
SIO_000300: 1.224e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

FS
type: SiteQuality
SIO_000300: 4.626e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

DP
type: SiteQuality
SIO_000300: 1.580417e6

MQRankSum
type: SiteQuality
SIO_000300: -1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7950
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variant carriers: 0

GenotypeQuality
all individuals: 2531
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.860580501116348e-4
allele num: 16124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62958
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.580417e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.13e0

MQ
type: SiteQuality
SIO_000300: 5.007e1

VQSLOD
type: SiteQuality
SIO_000300: -1.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

FS
type: SiteQuality
SIO_000300: 4.626e0

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
all individuals: 3783
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7937
bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.354855109303508e-5
allele num: 62944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.006e0

FS
type: SiteQuality
SIO_000300: 8.673999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 4.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

DP
type: SiteQuality
SIO_000300: 1.579899e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 8.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.519474425152511e-4
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 8.222e0

VQSLOD
type: SiteQuality
SIO_000300: -7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.174e1

MQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

DP
type: SiteQuality
SIO_000300: 1.578744e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.643e0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
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variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.206563706563707e-4
allele num: 8288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.184e0

QD
type: SiteQuality
SIO_000300: 1.303e1

FS
type: SiteQuality
SIO_000300: 2.174e0

MQ
type: SiteQuality
SIO_000300: 5.187e1

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.571707e6

GenotypeQuality
all individuals: 2481
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 778
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.986340762041697e-5
allele num: 11128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.189385724309498e-5
allele num: 62708
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.413127413127413e-4
allele num: 8288
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.187e1

FS
type: SiteQuality
SIO_000300: 2.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.571707e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 692
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GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.36854571293226e-4
allele num: 8444
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62570
num of homozygotes: 0

QD
type: SiteQuality
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DP
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SIO_000300: 1.569259e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 9.581e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.176e1

VQSLOD
type: SiteQuality
SIO_000300: -1.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.59821000479463e-5
allele num: 62570
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.176e1

DP
type: SiteQuality
SIO_000300: 1.569259e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 9.581e0

VQSLOD
type: SiteQuality
SIO_000300: -1.029e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62546
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.24470998257406e-4
allele num: 16068
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.142e0

VQSLOD
type: SiteQuality
SIO_000300: -9.968e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
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SIO_000300: 1.567279e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.242e0

QD
type: SiteQuality
SIO_000300: 1.258e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 4.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599488163787588e-5
allele num: 62520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.109e1

DP
type: SiteQuality
SIO_000300: 1.565728e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.277e1

MQRankSum
type: SiteQuality
SIO_000300: -1.795e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 6.965e0

VQSLOD
type: SiteQuality
SIO_000300: -1.672e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599488163787588e-5
allele num: 62520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.565728e6

MQ
type: SiteQuality
SIO_000300: 5.277e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQRankSum
type: SiteQuality
SIO_000300: -1.795e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.672e0

QD
type: SiteQuality
SIO_000300: 1.109e1

FS
type: SiteQuality
SIO_000300: 6.965e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.202972358348548e-5
allele num: 62442
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.420135527589545e-4
allele num: 8264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.56e0

InbreedingCoeff
type: SiteQuality
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DP
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SIO_000300: 1.564683e6

BaseQRankSum
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SIO_000300: -1.556e0

MQRankSum
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SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 2.189e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.611e-1

MQ
type: SiteQuality
SIO_000300: 5.485e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.007386056566384e-5
allele num: 11102
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.485e1

FS
type: SiteQuality
SIO_000300: 2.189e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.564683e6

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.611e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.62741888899586e-5
allele num: 62322
num of homozygotes: 0

Latino
type: Population
allele count: 55
allele frequency: 4.969280809541019e-3
allele num: 11068
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.989397530248223e-4
allele num: 16034
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.386065378191362e-4
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 7.274490785645005e-4
allele num: 8248
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.051e1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.002e1

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 152

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7651
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.525706010137581e-4
allele num: 11048
num of homozygotes: 1

East Asian
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allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 140
allele frequency: 2.249935716122396e-3
allele num: 62224
num of homozygotes: 3

African
type: Population
allele count: 9
allele frequency: 1.075525812619503e-3
allele num: 8368
num of homozygotes: 1

Other
type: Population
allele count: 0
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allele num: 840
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South Asian
type: Population
allele count: 8
allele frequency: 4.993134440144801e-4
allele num: 16022
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.556486e6

MQ
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607096940087426e-5
allele num: 62224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.95e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 1.556486e6

MQ
type: SiteQuality
SIO_000300: 5.731e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7651
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607096940087426e-5
allele num: 62224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 1.556486e6

MQ
type: SiteQuality
SIO_000300: 5.731e1

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.95e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607096940087426e-5
allele num: 62224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

DP
type: SiteQuality
SIO_000300: 1.556486e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.95e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.731e1

QD
type: SiteQuality
SIO_000300: 1.268e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7642
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 9.75e1
variant carriers: 140

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 4.623753399818676e-3
allele num: 11030
num of homozygotes: 0

East Asian
type: Population
allele count: 81
allele frequency: 9.842041312272174e-3
allele num: 8230
num of homozygotes: 3

African
type: Population
allele count: 3
allele frequency: 3.593675131768088e-4
allele num: 8348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.610357821507939e-4
allele num: 62098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.249218847644045e-4
allele num: 16002
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

DP
type: SiteQuality
SIO_000300: 1.553554e6

FS
type: SiteQuality
SIO_000300: 2.733e0

MQ
type: SiteQuality
SIO_000300: 5.582e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

GenotypeQuality
all individuals: 841
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.071117561683599e-5
allele num: 11024
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.102e0

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.668e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.13e1

QD
type: SiteQuality
SIO_000300: 1.018e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 1.548226e6

GenotypeQuality
all individuals: 899
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 806
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.612071189063709e-5
allele num: 62032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.092e0

VQSLOD
type: SiteQuality
SIO_000300: -3.406e-1

DP
type: SiteQuality
SIO_000300: 1.544887e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

MQ
type: SiteQuality
SIO_000300: 5.639e1

FS
type: SiteQuality
SIO_000300: 4.201e0

GenotypeQuality
all individuals: 806
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.60837142169834e-4
allele num: 8314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.201e0

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

DP
type: SiteQuality
SIO_000300: 1.544887e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.406e-1

MQ
type: SiteQuality
SIO_000300: 5.639e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5256
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.226743248039754e-5
allele num: 61982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.943000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.756e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.57e-1

FS
type: SiteQuality
SIO_000300: 2.905e0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.543392e6

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613371624019877e-5
allele num: 61982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.57e-1

FS
type: SiteQuality
SIO_000300: 2.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.082e1

VQSLOD
type: SiteQuality
SIO_000300: -5.943000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

DP
type: SiteQuality
SIO_000300: 1.543392e6

MQ
type: SiteQuality
SIO_000300: 5.756e1

GenotypeQuality
all individuals: 2607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.25281884239539e-4
allele num: 15964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 1.089e0

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.207e0

DP
type: SiteQuality
SIO_000300: 1.538596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 8.4e-1

MQ
type: SiteQuality
SIO_000300: 5.529e1

GenotypeQuality
all individuals: 998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2298
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.484874031321942e-5
allele num: 61682
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 3.212e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.053e0

MQ
type: SiteQuality
SIO_000300: 4.863e1

DP
type: SiteQuality
SIO_000300: 1.531067e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e0

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31049
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.220703125e-4
allele num: 8192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

DP
type: SiteQuality
SIO_000300: 1.516399e6

MQ
type: SiteQuality
SIO_000300: 5.862e1

VQSLOD
type: SiteQuality
SIO_000300: -2.53e0

QD
type: SiteQuality
SIO_000300: 4.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 1.832e0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627180421765165e-5
allele num: 61456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 4.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 1.832e0

DP
type: SiteQuality
SIO_000300: 1.516399e6

MQ
type: SiteQuality
SIO_000300: 5.862e1

VQSLOD
type: SiteQuality
SIO_000300: -2.53e0

GenotypeQuality
all individuals: 134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 7265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.808355354221719e-4
allele num: 15894
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.75e-1

MQ
type: SiteQuality
SIO_000300: 5.142e1

DP
type: SiteQuality
SIO_000300: 1.516259e6

FS
type: SiteQuality
SIO_000300: 2.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.754e0

MQRankSum
type: SiteQuality
SIO_000300: -1.606e0

VQSLOD
type: SiteQuality
SIO_000300: -1.606e0

QD
type: SiteQuality
SIO_000300: 1.169e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2530
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.140767824497258e-5
allele num: 10940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.26253629571629e-5
allele num: 61302
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.888780249327792e-4
allele num: 8182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.148614609571788e-4
allele num: 15880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 3.15e0

MQ
type: SiteQuality
SIO_000300: 5.444e1

DP
type: SiteQuality
SIO_000300: 1.511587e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

GenotypeQuality
all individuals: 194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
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variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
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variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.047318611987382e-4
allele num: 15850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.137e0

VQSLOD
type: SiteQuality
SIO_000300: -1.964e0

DP
type: SiteQuality
SIO_000300: 1.4974e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

QD
type: SiteQuality
SIO_000300: 4.19e0

GenotypeQuality
all individuals: 1763
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
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variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1516
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variant carriers: 0

GenotypeQuality
all individuals: 28720
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variant carriers: 0

GenotypeQuality
all individuals: 792
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variant carriers: 0

GenotypeQuality
all individuals: 6766
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 13
allele frequency: 1.197935864356801e-3
allele num: 10852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.335529650278763e-5
allele num: 15784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.234872808100766e-4
allele num: 8098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.47214e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.727000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.193e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.592e1

GenotypeQuality
all individuals: 1500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7528
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variant carriers: 0

GenotypeQuality
all individuals: 266
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variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 333
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variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.302946228035408e-5
allele num: 60552
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 8.250825082508251e-4
allele num: 15756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.247272054743851e-5
allele num: 10814
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.229407425620851e-4
allele num: 8134
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.237623762376238e-3
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.007e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

MQ
type: SiteQuality
SIO_000300: 5.637e1

DP
type: SiteQuality
SIO_000300: 1.455756e6

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.403e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

FS
type: SiteQuality
SIO_000300: 2.929e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

GenotypeQuality
all individuals: 266
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27429
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variant carriers: 0

GenotypeQuality
all individuals: 786
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GenotypeQuality
all individuals: 2016
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variant carriers: 0

GenotypeQuality
all individuals: 2406
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GenotypeQuality
all individuals: 7528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.247272054743851e-5
allele num: 10814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.302946228035408e-5
allele num: 60552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.929e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 1.455756e6

QD
type: SiteQuality
SIO_000300: 1.113e1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.403e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.007e0

MQ
type: SiteQuality
SIO_000300: 5.637e1

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 9.25e1
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GenotypeQuality
all individuals: 2050
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6528
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.240387000744232e-4
allele num: 8062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e0

MQ
type: SiteQuality
SIO_000300: 5.533e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 8.34e0

DP
type: SiteQuality
SIO_000300: 1.454159e6

GenotypeQuality
all individuals: 644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7803
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.905245776705195e-4
allele num: 15746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 5.807e1

VQSLOD
type: SiteQuality
SIO_000300: -2.876e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 1.440439e6

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26860
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.259259259259259e-5
allele num: 10800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.807e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

FS
type: SiteQuality
SIO_000300: 7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.876e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 1.440439e6

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 1455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25560
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GenotypeQuality
all individuals: 638
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.275672917463962e-4
allele num: 15678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.661019201381968e-5
allele num: 60204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.2306177701206e-4
allele num: 8126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.419827e6

MQ
type: SiteQuality
SIO_000300: 5.274e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.365e0

QD
type: SiteQuality
SIO_000300: 4.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

GenotypeQuality
all individuals: 2316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
all individuals: 8103
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 638
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variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.661019201381968e-5
allele num: 60204
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.419827e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.274e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.365e0

QD
type: SiteQuality
SIO_000300: 4.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

GenotypeQuality
all individuals: 1515
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2299
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variant carriers: 0

GenotypeQuality
all individuals: 8173
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.66461364317342e-5
allele num: 60074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.859e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.411e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.947e0

DP
type: SiteQuality
SIO_000300: 1.407734e6

GenotypeQuality
all individuals: 1444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 24893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.665778251599147e-5
allele num: 60032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.374e0

VQSLOD
type: SiteQuality
SIO_000300: -1.202e0

FS
type: SiteQuality
SIO_000300: 6.33e0

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.40671e6

GenotypeQuality
all individuals: 24820
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1433
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GenotypeQuality
all individuals: 1927
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.2531328320802e-3
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.334444814938313e-5
allele num: 59980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.541e0

DP
type: SiteQuality
SIO_000300: 1.401648e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.646e0

MQRankSum
type: SiteQuality
SIO_000300: -1.177e0

QD
type: SiteQuality
SIO_000300: 9.83e0

MQ
type: SiteQuality
SIO_000300: 4.898e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.771165426850868e-4
allele num: 5646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.654e0

FS
type: SiteQuality
SIO_000300: 1.952e0

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.395852e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
all individuals: 1666
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2248
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 687
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GenotypeQuality
all individuals: 768
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GenotypeQuality
all individuals: 8426
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GenotypeQuality
all individuals: 5864
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GenotypeQuality
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GenotypeQuality
all individuals: 1424
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GenotypeQuality
all individuals: 630
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.304056568663938e-5
allele num: 10748
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.277302337463278e-4
allele num: 15658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.882e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.342e1

VQSLOD
type: SiteQuality
SIO_000300: -3.348e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.336e0

DP
type: SiteQuality
SIO_000300: 1.380318e6

GenotypeQuality
all individuals: 2224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.278118609406953e-4
allele num: 7824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15616
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

FS
type: SiteQuality
SIO_000300: 4.913e0

VQSLOD
type: SiteQuality
SIO_000300: -1.916e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

QD
type: SiteQuality
SIO_000300: 5.07e0

DP
type: SiteQuality
SIO_000300: 1.379853e6

MQ
type: SiteQuality
SIO_000300: 5.699e1

GenotypeQuality
all individuals: 2133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22165
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.278935925310142e-4
allele num: 15638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.28e0

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

MQ
type: SiteQuality
SIO_000300: 5.773e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 4.606e0

DP
type: SiteQuality
SIO_000300: 1.367109e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

GenotypeQuality
all individuals: 2133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22165
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2548
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.676839492923737e-5
allele num: 59636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

MQ
type: SiteQuality
SIO_000300: 5.773e1

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

FS
type: SiteQuality
SIO_000300: 4.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 1.367109e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

GenotypeQuality
all individuals: 5091
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4991
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.400263207369807e-5
allele num: 10638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.797e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.263e0

QD
type: SiteQuality
SIO_000300: 3.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

DP
type: SiteQuality
SIO_000300: 1.314342e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.536e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

GenotypeQuality
all individuals: 736
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1334
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8306
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 4
allele frequency: 3.755868544600939e-4
allele num: 10650
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.912363067292645e-4
allele num: 7668
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.858736059479554e-3
allele num: 8070
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.223123471095661e-3
allele num: 15534
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.282051282051282e-3
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.066555965976482e-4
allele num: 59018
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.523e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

QD
type: SiteQuality
SIO_000300: 1.211e1

FS
type: SiteQuality
SIO_000300: 5.084e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

DP
type: SiteQuality
SIO_000300: 1.313534e6

GenotypeQuality
all individuals: 736
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.186078823409807e-4
allele num: 59018
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

MQ
type: SiteQuality
SIO_000300: 5.516e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

FS
type: SiteQuality
SIO_000300: 5.084e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.313534e6

VQSLOD
type: SiteQuality
SIO_000300: -2.523e-1

GenotypeQuality
all individuals: 4877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2261
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 2000
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2894
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7951
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.772873042822109e-4
allele num: 10602
num of homozygotes: 1

South Asian
type: Population
allele count: 19
allele frequency: 1.227390180878553e-3
allele num: 15480
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.298701298701299e-3
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.917827819984329e-4
allele num: 58706
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.73697270471464e-3
allele num: 8060
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.939075630252101e-4
allele num: 7616
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: -2.55e-1

FS
type: SiteQuality
SIO_000300: 3.879e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.300204e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.493e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 4191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
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variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5453
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.42407122068139e-5
allele num: 58410
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -1.736e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

FS
type: SiteQuality
SIO_000300: 5.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.288748e6

GenotypeQuality
all individuals: 2071
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5419
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5551
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.490035947370258e-5
allele num: 57306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.768e0

QD
type: SiteQuality
SIO_000300: 9.93e0

MQ
type: SiteQuality
SIO_000300: 5.414e1

DP
type: SiteQuality
SIO_000300: 1.280499e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

GenotypeQuality
all individuals: 3227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4636
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.344086021505376e-3
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.271481286241434e-5
allele num: 56910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.271481286241434e-4
allele num: 15176
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

DP
type: SiteQuality
SIO_000300: 1.27962e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.419e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeQuality
all individuals: 743
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5550
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.589351607801793e-5
allele num: 15176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56910
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.419e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 1.27962e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.86e1

FS
type: SiteQuality
SIO_000300: 2.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.01e1

VQSLOD
type: SiteQuality
SIO_000300: -6.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.02e-2

DP
type: SiteQuality
SIO_000300: 2.64195e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1