19-11459642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459642
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459642
    reference: chr 19
allele count: 1
allele frequency: 1.15877540615078e-5
allele num: 86298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.22G>A
  hgvsp: ENSP00000467391.1:p.Ala8Thr
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-972G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-610G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-688G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-610G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.55G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala8Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

19-11459650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459650
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459650
    reference: chr 19
allele count: 1
allele frequency: 1.255618894553125e-5
allele num: 79642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-964T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.63T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-680T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.30T>C
  hgvsp: ENST00000590636.1:c.30T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-680T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-680T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-602T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-680T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-680T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-680T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-602T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-680T>C
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro10Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-11459651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459651
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459651
    reference: chr 19
allele count: 1
allele frequency: 1.278510790631073e-5
allele num: 78216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-679C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-679C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-679C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-963C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.64C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-601C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-679C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.31C>T
  hgvsp: ENSP00000467391.1:p.Arg11Trp
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-679C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-601C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-679C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-679C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19505
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg11Trp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

19-11459652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459652
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459652
    reference: chr 19
allele count: 2
allele frequency: 2.586786693569248e-5
allele num: 77316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-678G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.32G>A
  hgvsp: ENSP00000467391.1:p.Arg11Gln
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-678G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-678G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-600G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-678G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-678G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-962G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-678G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.65G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-600G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-678G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19456
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg11Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

19-11459665-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459665
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459666
    reference: chr 19
allele count: 17763
allele frequency: 2.20166088249876e-1
allele num: 80680
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-664dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-948dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-664dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.79dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-664dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-664dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.46dupA
  hgvsp: ENSP00000467391.1:p.Ser16LysfsTer48
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-664dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-664dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-586dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-586dupA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-664dupA
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 19701
  bin: 1.25e1
  variant carriers: 6534
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 2.25e1
  variant carriers: 1655
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 559
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 7.5e0
  variant carriers: 3142
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 1.75e1
  variant carriers: 4229
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 2.5e0
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 207
genotype quality: GenotypeQuality
hgvs: p.Ser16LysfsTer48
num of homozygotes: 2088
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

19-11459668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459668
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459668
    reference: chr 19
allele count: 26
allele frequency: 3.317680685994284e-4
allele num: 78368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.48C>T
  hgvsp: ENST00000590636.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.81C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-662C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-584C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-584C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-946C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19590
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser16Ser
num of homozygotes: 1
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

19-11459669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459669
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459669
    reference: chr 19
allele count: 7729
allele frequency: 1.001866590620382e-1
allele num: 77146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.49G>A
  hgvsp: ENSP00000467391.1:p.Val17Ile
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-583G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.82G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-583G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-661G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-945G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 2.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 7242
  bin: 1.75e1
  variant carriers: 2071
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 1.25e1
  variant carriers: 3060
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.5e0
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 16827
  bin: 7.5e0
  variant carriers: 1414
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 2.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
hgvs: p.Val17Ile
num of homozygotes: 391
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

19-11459673-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459673
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459673
    reference: chr 19
allele count: 6
allele frequency: 7.992753237065061e-5
allele num: 75068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.86A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-579A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-579A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-941A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-657A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.53A>G
  hgvsp: ENSP00000467391.1:p.Gln18Arg
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19405
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18401
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln18Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

19-11459675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459675
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459675
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 74380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-939C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-577C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.88C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.55C>T
  hgvsp: ENSP00000467391.1:p.Leu19Phe
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-655C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-577C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu19Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

19-11459677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459677
    reference: chr 19
allele count: 18
allele frequency: 2.423915970913008e-4
allele num: 74260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-653C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-653C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-575C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.57C>T
  hgvsp: ENST00000590636.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-575C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-653C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-653C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-937C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-653C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.90C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-653C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-653C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18619
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu19Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

19-11459678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459678
    reference: chr 19
allele count: 1
allele frequency: 1.347200517324999e-5
allele num: 74228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-574A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.58A>G
  hgvsp: ENSP00000467391.1:p.Thr20Ala
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.91A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-574A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-652A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-936A>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr20Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

19-11459679-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459679
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459679
    reference: chr 19
allele count: 1
allele frequency: 1.352667460231577e-5
allele num: 73928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-573C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-935C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-573C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-651C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-651C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.59C>G
  hgvsp: ENSP00000467391.1:p.Thr20Ser
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.92C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-651C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-651C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-651C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-651C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-651C>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr20Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-11459681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459681
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459681
    reference: chr 19
allele count: 1
allele frequency: 1.355454348297549e-5
allele num: 73776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-571G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.61G>A
  hgvsp: ENSP00000467391.1:p.Gly21Ser
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.94G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-933G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-649G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-571G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly21Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-11459687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459687
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459687
    reference: chr 19
allele count: 2
allele frequency: 2.741528676389955e-5
allele num: 72952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-927G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.67G>A
  hgvsp: ENSP00000467391.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.100G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-643G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-565G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19036
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly23Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-11459688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459688
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459688
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 73086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-642G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-642G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-642G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-564G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-564G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-642G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-642G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.68G>A
  hgvsp: ENSP00000467391.1:p.Gly23Glu
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-642G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.101G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-926G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-642G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19269
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly23Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-11459695-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459695
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459695
    reference: chr 19
allele count: 1
allele frequency: 1.376689886836091e-5
allele num: 72638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-557G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.108G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.75G>C
  hgvsp: ENSP00000467391.1:p.Gln25His
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-635G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-557G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-919G>C
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln25His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-11459697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459697
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459697
    reference: chr 19
allele count: 1
allele frequency: 1.379424504096891e-5
allele num: 72494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-633G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-633G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-633G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-633G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-555G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-633G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-917G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-555G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-633G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.77G>A
  hgvsp: ENSP00000467391.1:p.Ser26Asn
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.110G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-633G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser26Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-11459699-C-CAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459699
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459701
    reference: chr 19
allele count: 1
allele frequency: 1.380719631071715e-5
allele num: 72426
alternate allele: CAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-627_98-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.116_117dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-627_105-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-627_29-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-627_22-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-627_71-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-911_-14-910dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-549_-126-548dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-627_29-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.83_84dupGA
  hgvsp: ENSP00000467391.1:p.Pro29AspfsTer?
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-627_22-626dupGA
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-549_-126-548dupGA
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro29AspfsTer?
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

19-11459709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459709
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459709
    reference: chr 19
allele count: 668
allele frequency: 9.270567336516043e-3
allele num: 72056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-621G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-543G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-905G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-621G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-543G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-621G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-621G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-621G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-621G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.122G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.89G>A
  hgvsp: ENSP00000467391.1:p.Trp30Ter
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-621G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 7.5e0
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 1.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 18361
  bin: 1.25e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Trp30Ter
num of homozygotes: 26
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

19-11459735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459735
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459735
    reference: chr 19
allele count: 1
allele frequency: 1.363549592298672e-5
allele num: 73338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-879T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-517T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.148T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-517T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-595T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-595T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-595T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-595T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.115T>C
  hgvsp: ENSP00000467391.1:p.Ter39ArgextTer35
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-595T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-595T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-595T>C
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter39ArgextTer35
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

19-11459743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459743
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459743
    reference: chr 19
allele count: 2
allele frequency: 2.704530087897228e-5
allele num: 73950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.156G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-587G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-587G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-509G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-587G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-587G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-587G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-509G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-587G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-871G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-587G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17128
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-11459749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459749
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459749
    reference: chr 19
allele count: 1
allele frequency: 1.328550551348479e-5
allele num: 75270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-503T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-581T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.162T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-581T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-581T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-581T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-581T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-581T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-503T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-865T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-581T>C
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

19-11459753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459753
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459753
    reference: chr 19
allele count: 5
allele frequency: 6.586400400453144e-5
allele num: 75914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-577G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-499G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-577G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-861G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.166G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-577G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-577G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-577G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-499G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-577G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-577G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16290
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

19-11459758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459758
    reference: chr 19
allele count: 2
allele frequency: 2.590338039114104e-5
allele num: 77210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.171G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-572G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-572G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-856G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-494G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-572G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-572G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-572G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-494G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-572G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-572G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*21G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

19-11459763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459763
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459763
    reference: chr 19
allele count: 1
allele frequency: 1.278478099670153e-5
allele num: 78218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-567G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-851G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-567G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-489G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+4G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-567G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-567G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-489G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.176G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-567G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-567G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-567G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*22+4G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

19-11459765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459765
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459765
    reference: chr 19
allele count: 8
allele frequency: 1.016363451570281e-4
allele num: 78712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+6G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-849G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-487G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-487G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.178G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-565G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-565G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15098
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18454
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*22+6G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-11459771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459771
    reference: chr 19
allele count: 1
allele frequency: 1.243162605668821e-5
allele num: 80440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-843G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-559G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.184G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-559G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-481G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-559G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-559G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+12G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-481G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-559G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-559G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-559G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14397
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

19-11459777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459777
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459777
    reference: chr 19
allele count: 13
allele frequency: 1.583241992449154e-4
allele num: 82110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-837C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.190C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-475C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+18C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-553C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-475C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14536
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

19-11459778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459778
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459778
    reference: chr 19
allele count: 94
allele frequency: 1.139311080406273e-3
allele num: 82506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-552G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-474G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-552G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-552G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-552G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+19G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-552G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.191G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-836G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-552G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-474G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-552G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16816
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13355
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14767
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

19-11459802-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459802
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459802
    reference: chr 19
allele count: 1
allele frequency: 1.088992464172148e-5
allele num: 91828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-812C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+43C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.215C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-450C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-528C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-450C>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

19-11459802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459802
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459802
    reference: chr 19
allele count: 1
allele frequency: 1.088992464172148e-5
allele num: 91828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-528C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+43C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-528C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-812C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.215C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-528C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-528C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-528C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-528C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-528C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-11459818-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459818
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459818
    reference: chr 19
allele count: 14
allele frequency: 1.458424484863637e-4
allele num: 95994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-434A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+59A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-796A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.231A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-512A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-434A>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10997
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29066
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-11459828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459828
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459828
    reference: chr 19
allele count: 10
allele frequency: 1.040084870925468e-4
allele num: 96146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-502G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-786G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-424G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-502G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-502G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.241G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-424G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-502G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-502G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-502G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+69G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-502G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29036
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

19-11459862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459862
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459862
    reference: chr 19
allele count: 13
allele frequency: 1.549094375595806e-4
allele num: 83920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-390C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-468C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-468C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-752C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-468C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+103C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-468C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-468C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-468C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.275C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-390C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-468C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14570
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

19-11459863-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459863
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459863
    reference: chr 19
allele count: 2
allele frequency: 2.422774076317383e-5
allele num: 82550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-389G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+104G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.276G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-389G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-467G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-751G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14529
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

19-11459870-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459870
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459869
    reference: chr 19
allele count: 1
allele frequency: 1.277530788492003e-5
allele num: 78276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-380delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-458delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-458delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.285delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-458delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-458delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-742delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-458delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+113delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-458delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-380delG
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-458delG
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: AG
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-11459871-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459871
    reference: chr 19
allele count: 18
allele frequency: 2.326483132997286e-4
allele num: 77370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-459G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-459G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-381G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-459G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-459G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-381G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-459G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-459G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.284G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+112G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-743G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-459G>C
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18923
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

19-11459872-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459872
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459872
    reference: chr 19
allele count: 1
allele frequency: 1.306096860143148e-5
allele num: 76564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-458G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.285G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-458G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-458G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-458G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-380G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+113G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-742G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-458G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-380G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-458G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-458G>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

19-11459880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459880
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459880
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 68362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-372C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.293C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+121C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-372C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-450C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-734C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-450C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11459885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459885
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459885
    reference: chr 19
allele count: 86
allele frequency: 1.372004722248812e-3
allele num: 62682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-445G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-445G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.298G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-729G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-445G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-367G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-445G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-445G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+126G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-445G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-367G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-445G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22425
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22337
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-11459890-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459890
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459890
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 58070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+131A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-440A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-724A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-440A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-440A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-440A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-440A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-440A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-362A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.303A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-362A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-440A>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22978
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/19-11459892-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459892
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459892
    reference: chr 19
allele count: 1
allele frequency: 1.828019888856391e-5
allele num: 54704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-360C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.305C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+133C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-360C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-438C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-722C>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

19-11459892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11459892
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11459892
    reference: chr 19
allele count: 1
allele frequency: 1.828019888856391e-5
allele num: 54704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.305C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-438C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-438C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-722C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-126-360C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-126-360C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*22+133C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-438C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-438C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-438C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-438C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-438C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21009
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-11460281-A-AGGCAGCTCAGGGACAAATTTCTACTCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460281
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460309
    reference: chr 19
allele count: 1
allele frequency: 9.371719898035687e-6
allele num: 106704
alternate allele: AGGCAGCTCAGGGACAAATTTCTACTCCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4628
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-11460286-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460286
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460286
    reference: chr 19
allele count: 1
allele frequency: 9.374355513058478e-6
allele num: 106674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-92G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.699G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-328G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-92G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-44G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-44G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11919
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-11460293-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460293
    reference: chr 19
allele count: 1
allele frequency: 9.302671727320086e-6
allele num: 107496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-85G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-321G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-85G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.706G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-37G>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-37G>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-11460306-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460306
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460306
    reference: chr 19
allele count: 1
allele frequency: 9.207085773211064e-6
allele num: 108612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-72T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-72T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-308T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-24T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.719T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-24T>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

19-11460307-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460307
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460307
    reference: chr 19
allele count: 1
allele frequency: 9.20030913038678e-6
allele num: 108692
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.720C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-71C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-71C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-23C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-307C>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-23C>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27562
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

19-11460310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460310
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 109210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.723A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-304A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-20A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-20A>G
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-11460318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460318
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460318
    reference: chr 19
allele count: 1
allele frequency: 9.075563138692755e-6
allele num: 110186
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-296T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-60T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-60T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.731T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-12T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-12T>C
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-11460711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460711
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460711
    reference: chr 19
allele count: 1
allele frequency: 8.532277606184194e-6
allele num: 117202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.193+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.75+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.144+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.144+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.*40+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.220+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.227+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.75+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*145+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.75+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.114+9C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.*40+9C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

19-11460322-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460322
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460322
    reference: chr 19
allele count: 3
allele frequency: 2.710173993170362e-5
allele num: 110694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.735T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-56T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-56T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-8T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-292T>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-8T>A
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.22-8T>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

19-11460323-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460323
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460323
    reference: chr 19
allele count: 1
allele frequency: 9.023479092598943e-6
allele num: 110822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.98-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.105-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.736T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.22-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*23-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.22-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.71-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.29-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-291T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.29-7T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-55T>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-55T>G
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.22-7T>G
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/19-11460333-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460333
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460333
    reference: chr 19
allele count: 1
allele frequency: 8.957683901250492e-6
allele num: 111636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.32C>A
  hgvsp: ENSP00000465744.1:p.Ala11Asp
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.108C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.25C>A
  hgvsp: ENSP00000402239.1:p.Pro9Thr
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*26C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.746C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.25C>A
  hgvsp: ENSP00000468232.1:p.Pro9Thr
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.74C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-281C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.101C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.32C>A
  hgvsp: ENSP00000465290.1:p.Ala11Asp
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro9Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-11460335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460335
    reference: chr 19
allele count: 7
allele frequency: 6.257039169065198e-5
allele num: 111874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.34C>T
  hgvsp: ENSP00000465744.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.27C>T
  hgvsp: ENST00000588790.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.27C>T
  hgvsp: ENST00000458408.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.34C>T
  hgvsp: ENSP00000465290.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.103C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.748C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.76C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.110C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-279C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33536
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8623
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu12Phe
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-11460337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460337
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460337
    reference: chr 19
allele count: 1
allele frequency: 8.926339843610525e-6
allele num: 112028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*30T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-277T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.36T>C
  hgvsp: ENST00000590919.1:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.36T>C
  hgvsp: ENST00000592723.1:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.750T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.105T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.29T>C
  hgvsp: ENSP00000402239.1:p.Leu10Ser
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.29T>C
  hgvsp: ENSP00000468232.1:p.Leu10Ser
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.78T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.112T>C
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu10Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-11460344-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460344
    reference: chr 19
allele count: 1
allele frequency: 8.95078856447253e-6
allele num: 111722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-34C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.36C>A
  hgvsp: ENST00000458408.1:c.36C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.43C>A
  hgvsp: ENSP00000465290.1:p.Gln15Lys
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*37C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.85C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.43C>A
  hgvsp: ENSP00000465744.1:p.Gln15Lys
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.6C>A
  hgvsp: ENST00000591260.1:c.6C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-34C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.757C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-270C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.36C>A
  hgvsp: ENST00000588790.1:c.36C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.112C>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.119C>A
  variant of: http://identifiers.org/hgnc/26996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln15Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-11460354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460354
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460354
    reference: chr 19
allele count: 1
allele frequency: 8.992805755395683e-6
allele num: 111200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.16A>G
  hgvsp: ENSP00000466796.1:p.Lys6Glu
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.122A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.53A>G
  hgvsp: ENSP00000465744.1:p.Gln18Arg
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.46A>G
  hgvsp: ENSP00000468232.1:p.Lys16Glu
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-260A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.46A>G
  hgvsp: ENSP00000402239.1:p.Lys16Glu
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.129A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.95A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.767A>G
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.53A>G
  hgvsp: ENSP00000465290.1:p.Gln18Arg
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys16Glu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-11460358-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460358
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460358
    reference: chr 19
allele count: 1
allele frequency: 9.037178954217652e-6
allele num: 110654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*51T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.133T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.50T>C
  hgvsp: ENSP00000402239.1:p.Val17Ala
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.771T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.99T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.50T>C
  hgvsp: ENSP00000468232.1:p.Val17Ala
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-256T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.20T>C
  hgvsp: ENSP00000466796.1:p.Val7Ala
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.57T>C
  hgvsp: ENST00000592723.1:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.126T>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.57T>C
  hgvsp: ENST00000590919.1:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val17Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-11460364-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460364
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460364
    reference: chr 19
allele count: 1
allele frequency: 9.08859563020322e-6
allele num: 110028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+1G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-250G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589477
  gene symbol: CCDC159
  hgvsc: ENST00000589477.1:n.777G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+1G>C
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.55+1G>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-11460370-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460370
    reference: chr 19
allele count: 2
allele frequency: 1.829357529635592e-5
allele num: 109328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-244A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+7A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+7A>C
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24534
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.55+7A>C
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

19-11460372-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460372
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460369
    reference: chr 19
allele count: 1
allele frequency: 9.165734816960276e-6
allele num: 109102
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+12_55+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-239_-14-237delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+12_62+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+12_62+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+12_*56+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+12_-15+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+12_55+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+12_-15+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+12_104+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+12_138+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+12_131+14delCCT
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+12_25+14delCCT
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: TCTC
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/19-11460386-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460386
    reference: chr 19
allele count: 603
allele frequency: 5.613479798920126e-3
allele num: 107420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-228A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+23A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+23A>C
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 1.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14391
  bin: 2.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-11460393-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460393
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460393
    reference: chr 19
allele count: 1
allele frequency: 9.414245636497147e-6
allele num: 106222
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-221G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+30G>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+30G>C
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-11460396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460396
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460396
    reference: chr 19
allele count: 5
allele frequency: 4.75809828327814e-5
allele num: 105084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+33G>A
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-218G>A
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19268
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-11460400-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460400
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460400
    reference: chr 19
allele count: 1
allele frequency: 9.572675754326849e-6
allele num: 104464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+37A>C
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-214A>C
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-11460403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11460403
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 11460403
    reference: chr 19
allele count: 1
allele frequency: 9.689922480620156e-6
allele num: 103200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000588821
  gene symbol: CCDC159
  hgvsc: ENST00000588821.1:n.131+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000590054
  gene symbol: CCDC159
  hgvsc: ENST00000590054.1:n.138+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000468232
  ensembl transcript: ENST00000588790
  gene symbol: CCDC159
  hgvsc: ENST00000588790.1:c.55+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466882
  ensembl transcript: ENST00000587531
  gene symbol: CCDC159
  hgvsc: ENST00000587531.1:c.-15+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465560
  ensembl transcript: ENST00000586451
  gene symbol: CCDC159
  hgvsc: ENST00000586451.1:c.-14-211C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465290
  ensembl transcript: ENST00000592723
  gene symbol: CCDC159
  hgvsc: ENST00000592723.1:c.62+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000467391
  ensembl transcript: ENST00000590636
  gene symbol: CCDC159
  hgvsc: ENST00000590636.1:c.*56+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465744
  ensembl transcript: ENST00000590919
  gene symbol: CCDC159
  hgvsc: ENST00000590919.1:c.62+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl transcript: ENST00000589016
  gene symbol: CCDC159
  hgvsc: ENST00000589016.1:n.104+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000402239
  ensembl transcript: ENST00000458408
  gene symbol: CCDC159
  hgvsc: ENST00000458408.1:c.55+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000465790
  ensembl transcript: ENST00000588592
  gene symbol: CCDC159
  hgvsc: ENST00000588592.1:c.-15+40C>T
  variant of: http://identifiers.org/hgnc/26996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183401
  ensembl protein: ENSP00000466796
  ensembl transcript: ENST00000591260
  gene symbol: CCDC159
  hgvsc: ENST00000591260.1:c.25+40C>T
  variant of: http://identifiers.org/hgnc/26996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 1694
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4688
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4638
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.402524544179523e-4
allele num: 7130
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

QD
type: SiteQuality
SIO_000300: 9.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 9.1829e5

FS
type: SiteQuality
SIO_000300: 2.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.353e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12784
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.529987760097919e-4
allele num: 6536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.03041e5

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

FS
type: SiteQuality
SIO_000300: 3.909e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

QD
type: SiteQuality
SIO_000300: 1.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1621
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6814
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.269941435510964e-5
allele num: 44054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.01668e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.198e0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-1

QD
type: SiteQuality
SIO_000300: 2.84e0

FS
type: SiteQuality
SIO_000300: 9.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

GenotypeDepth
all individuals: 50
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4668
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6959
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23505
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 689
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.291895856252292e-5
allele num: 43632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.901863826550019e-4
allele num: 5258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.98826e5

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.117e1

FS
type: SiteQuality
SIO_000300: 4.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

GenotypeDepth
all individuals: 281
bin: 4.25e1
variant carriers: 187

GenotypeDepth
all individuals: 237
bin: 7.25e1
variant carriers: 236

GenotypeQuality
all individuals: 965
bin: 4.75e1
variant carriers: 323

GenotypeQuality
all individuals: 15668
bin: 2.25e1
variant carriers: 304

GenotypeQuality
all individuals: 2376
bin: 7.5e0
variant carriers: 91

GenotypeQuality
all individuals: 3927
bin: 2.75e1
variant carriers: 240

GenotypeQuality
all individuals: 2185
bin: 3.75e1
variant carriers: 407

GenotypeQuality
all individuals: 1530
bin: 1.75e1
variant carriers: 195

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 174

GenotypeQuality
all individuals: 1982
bin: 2.5e0
variant carriers: 65

GenotypeQuality
all individuals: 1110
bin: 1.25e1
variant carriers: 143

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 116

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 266

GenotypeQuality
all individuals: 6176
bin: 6.25e1
variant carriers: 166

GenotypeQuality
all individuals: 775
bin: 4.25e1
variant carriers: 224

GenotypeQuality
all individuals: 750
bin: 5.25e1
variant carriers: 292

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 270

GenotypeQuality
all individuals: 3948
bin: 3.25e1
variant carriers: 366

GenotypeQuality
all individuals: 316
bin: 7.75e1
variant carriers: 186

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 106

GenotypeQuality
all individuals: 15015
bin: 9.75e1
variant carriers: 14852

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 364

European (Finnish)
type: Population
allele count: 727
allele frequency: 1.974470396523628e-1
allele num: 3682
num of homozygotes: 55

Other
type: Population
allele count: 132
allele frequency: 2.23728813559322e-1
allele num: 590
num of homozygotes: 16

East Asian
type: Population
allele count: 1597
allele frequency: 2.841637010676157e-1
allele num: 5620
num of homozygotes: 196

South Asian
type: Population
allele count: 4381
allele frequency: 3.245666024596237e-1
allele num: 13498
num of homozygotes: 692

Latino
type: Population
allele count: 2995
allele frequency: 4.447579447579448e-1
allele num: 6734
num of homozygotes: 580

African
type: Population
allele count: 249
allele frequency: 3.987828315182575e-2
allele num: 6244
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 7682
allele frequency: 1.733616176205091e-1
allele num: 44312
num of homozygotes: 545

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.026e1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.41787e5

VQSLOD
type: SiteQuality
SIO_000300: 6.42e0

GenotypeDepth
all individuals: 206
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.866832607342875e-3
allele num: 12856
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.268293789411605e-5
allele num: 44086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.723543605653223e-4
allele num: 5802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5178
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

QD
type: SiteQuality
SIO_000300: 1.798e1

VQSLOD
type: SiteQuality
SIO_000300: -3.591e-1

DP
type: SiteQuality
SIO_000300: 8.60853e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 2.692e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 39

GenotypeDepth
all individuals: 53
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variant carriers: 53

GenotypeQuality
all individuals: 101
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variant carriers: 59

GenotypeQuality
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variant carriers: 34

GenotypeQuality
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bin: 2.75e1
variant carriers: 39

GenotypeQuality
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bin: 8.25e1
variant carriers: 45

GenotypeQuality
all individuals: 8175
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variant carriers: 7966

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 609
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variant carriers: 60

GenotypeQuality
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variant carriers: 59

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 49

GenotypeQuality
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GenotypeQuality
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variant carriers: 32

GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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variant carriers: 49

GenotypeQuality
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variant carriers: 66

GenotypeQuality
all individuals: 766
bin: 4.25e1
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GenotypeQuality
all individuals: 4623
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variant carriers: 76

GenotypeQuality
all individuals: 19804
bin: 2.25e1
variant carriers: 63

South Asian
type: Population
allele count: 1020
allele frequency: 7.989973366755444e-2
allele num: 12766
num of homozygotes: 43

East Asian
type: Population
allele count: 10
allele frequency: 1.963093835885355e-3
allele num: 5094
num of homozygotes: 0

Latino
type: Population
allele count: 305
allele frequency: 5.390597384234712e-2
allele num: 5658
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 623
allele frequency: 1.747055524397084e-1
allele num: 3566
num of homozygotes: 40

European (Non-Finnish)
type: Population
allele count: 5570
allele frequency: 1.284297901775421e-1
allele num: 43370
num of homozygotes: 289

Other
type: Population
allele count: 60
allele frequency: 1.041666666666667e-1
allele num: 576
num of homozygotes: 4

African
type: Population
allele count: 141
allele frequency: 2.305428384565075e-2
allele num: 6116
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
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SIO_000300: 1.96e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 0.0e0

DP
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SIO_000300: 8.62657e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5632
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GenotypeQuality
all individuals: 268
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variant carriers: 8

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.167769560140132e-3
allele num: 5138
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 1.049e0

DP
type: SiteQuality
SIO_000300: 8.03007e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

GenotypeDepth
all individuals: 4610
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 2800
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5617
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8942
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GenotypeQuality
all individuals: 66
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 8.0049e5

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 4608
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19328
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variant carriers: 5

GenotypeQuality
all individuals: 342
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variant carriers: 0

GenotypeQuality
all individuals: 1306
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5601
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GenotypeQuality
all individuals: 1970
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GenotypeQuality
all individuals: 917
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variant carriers: 0

GenotypeQuality
all individuals: 275
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24175
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GenotypeQuality
all individuals: 114
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12530
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.97717499173007e-3
allele num: 6046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 5.325e0

BaseQRankSum
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SIO_000300: -2.289e0

DP
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SIO_000300: 8.00344e5

QD
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24204
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.963093835885355e-4
allele num: 5094
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 12520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQ
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 9313
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.428717151600525e-5
allele num: 41174
num of homozygotes: 0

South Asian
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East Asian
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African
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Other
type: Population
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allele frequency: 0.0e0
allele num: 564
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2710
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GenotypeQuality
all individuals: 500
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.660577881102624e-4
allele num: 6022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.241e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.464e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

DP
type: SiteQuality
SIO_000300: 7.98613e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

GenotypeDepth
all individuals: 14
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 242
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2688
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3120
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.613684040664838e-4
allele num: 12394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

QD
type: SiteQuality
SIO_000300: 1.292e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.682e0

InbreedingCoeff
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SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 7.94585e5

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 5608
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4982
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 7.95188e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 3386
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 25069
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variant carriers: 0

GenotypeQuality
all individuals: 9684
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variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.105041335710812e-5
allele num: 12338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3098
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.562e0

DP
type: SiteQuality
SIO_000300: 7.95548e5

MQ
type: SiteQuality
SIO_000300: 5.897e1

VQSLOD
type: SiteQuality
SIO_000300: -1.127e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

QD
type: SiteQuality
SIO_000300: 1.383e1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1249
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9703
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5382
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GenotypeQuality
all individuals: 1399
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.471210398853358e-5
allele num: 40466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12304
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 7.95989e5

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.529e0

QD
type: SiteQuality
SIO_000300: 1.133e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 5371
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.91131498470948e-4
allele num: 5232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

DP
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SIO_000300: 7.96178e5

MQ
type: SiteQuality
SIO_000300: 5.645e1

MQRankSum
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SIO_000300: -5.31e-1

VQSLOD
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SIO_000300: 3.73e0

QD
type: SiteQuality
SIO_000300: 1.352e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 9557
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 604

GenotypeQuality
all individuals: 719
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GenotypeQuality
all individuals: 68
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variant carriers: 15

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 82
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variant carriers: 20

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 9

Latino
type: Population
allele count: 34
allele frequency: 6.533435818601076e-3
allele num: 5204
num of homozygotes: 0

African
type: Population
allele count: 609
allele frequency: 1.003625576796309e-1
allele num: 6068
num of homozygotes: 26

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4862
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 5.232731984451311e-4
allele num: 40132
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.610108303249098e-3
allele num: 554
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South Asian
type: Population
allele count: 2
allele frequency: 1.636125654450262e-4
allele num: 12224
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MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
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SIO_000300: 8.01691e5

BaseQRankSum
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SIO_000300: -1.293e0

InbreedingCoeff
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SIO_000300: 2.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
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QD
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SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1052
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GenotypeQuality
all individuals: 242
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GenotypeQuality
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GenotypeQuality
all individuals: 794
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GenotypeQuality
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GenotypeQuality
all individuals: 1384
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GenotypeQuality
all individuals: 25371
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.002402883460152e-4
allele num: 4994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41162
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQ
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.811624885723909e-5
allele num: 41566
num of homozygotes: 0

Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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African
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.360383326252183e-5
allele num: 42366
num of homozygotes: 0

FS
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SIO_000300: 4.481e0

BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 5.270555165144061e-4
allele num: 5692
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.678800355588827e-5
allele num: 42746
num of homozygotes: 0

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

African
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allele frequency: 3.210272873194221e-4
allele num: 6230
num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 6000
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European (Non-Finnish)
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allele frequency: 2.2663403136615e-5
allele num: 44124
num of homozygotes: 0

African
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East Asian
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South Asian
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Other
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 1.773049645390071e-4
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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QD
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InbreedingCoeff
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SIO_000300: -3.9e-3

MQ
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SIO_000300: 5.833e1

ClippingRankSum
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SIO_000300: 7.1e-1

FS
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.022012578616352e-3
allele num: 12720
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 90

European (Non-Finnish)
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allele count: 2
allele frequency: 4.29000429000429e-5
allele num: 46620
num of homozygotes: 0

African
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allele frequency: 1.285541439806413e-2
allele num: 6612
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 6.090133982947625e-4
allele num: 6568
num of homozygotes: 0

East Asian
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allele frequency: 1.715265866209262e-4
allele num: 5830
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South Asian
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allele frequency: 1.571832756994656e-4
allele num: 12724
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52046
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 9.53e-1

ReadPosRankSum
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ClippingRankSum
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DP
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FS
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QD
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

East Asian
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allele frequency: 1.50195253829979e-4
allele num: 6658
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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FS
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

Latino
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allele count: 14
allele frequency: 1.639728273600375e-3
allele num: 8538
num of homozygotes: 0

Other
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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MQ
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 3.539196602371262e-4
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European (Non-Finnish)
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allele frequency: 8.334027835652971e-5
allele num: 47996
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African
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Other
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East Asian
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European (Finnish)
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QD
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SIO_000300: 1.005e1

BaseQRankSum
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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SIO_000300: 5.3e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 2.117477660610681e-5
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Latino
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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FS
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 2.649625935162095e-3
allele num: 6416
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.248909278999685e-5
allele num: 44466
num of homozygotes: 0

FS
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DP
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.270147559591373e-5
allele num: 44050
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39642
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

European (Non-Finnish)
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allele num: 36820
num of homozygotes: 0

South Asian
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East Asian
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Latino
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African
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Other
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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European (Finnish)
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African
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Other
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Latino
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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DP
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SIO_000300: 6.30787e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.0480370641307e-5
allele num: 32808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

MQRankSum
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SIO_000300: 4.59e-1

BaseQRankSum
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SIO_000300: -2.262e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
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SIO_000300: 3.37e-1

QD
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SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 4.16e0

DP
type: SiteQuality
SIO_000300: 6.09928e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.0480370641307e-5
allele num: 32808
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2414
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

VQSLOD
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BaseQRankSum
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QD
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MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 6.09928e5

ReadPosRankSum
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SIO_000300: 3.37e-1

FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.683898561950628e-5
allele num: 59386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.377e0

MQRankSum
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DP
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SIO_000300: 1.394464e6

FS
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.155e1

InbreedingCoeff
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SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.11e-1

BaseQRankSum
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SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.48e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14656
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.685601591207902e-5
allele num: 59326
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.1e-3

FS
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SIO_000300: 2.618e0

BaseQRankSum
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SIO_000300: -2.843e0

MQRankSum
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SIO_000300: 3.11e-1

ClippingRankSum
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SIO_000300: -3.25e-1

MQ
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SIO_000300: 6.0e1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

ReadPosRankSum
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SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.008e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.670843776106934e-5
allele num: 59850
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.45493e6

QD
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 9.82e-1

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 60516
num of homozygotes: 0

BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
type: SiteQuality
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

South Asian
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MQRankSum
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FS
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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Other
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Latino
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South Asian
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East Asian
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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Other
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European (Non-Finnish)
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East Asian
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African
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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FS
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MQ
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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QD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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African
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East Asian
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.860031104199067e-5
allele num: 61728
num of homozygotes: 0

South Asian
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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allele num: 8672
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Other
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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MQRankSum
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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allele num: 62418
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BaseQRankSum
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QD
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VQSLOD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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SIO_000300: 1.621404e6

GenotypeDepth
all individuals: 4289
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600819619645258e-5
allele num: 62468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.284e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.963e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 1.622695e6

QD
type: SiteQuality
SIO_000300: 7.84e0

GenotypeDepth
all individuals: 919
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 728
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15138
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.569377990430622e-5
allele num: 10450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.677e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.136e0

VQSLOD
type: SiteQuality
SIO_000300: -1.656e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.61e-1

DP
type: SiteQuality
SIO_000300: 1.617936e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 5.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1045
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variant carriers: 1

GenotypeDepth
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
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variant carriers: 0

GenotypeQuality
all individuals: 685
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6464
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

QD
type: SiteQuality
SIO_000300: 1.191e1

DP
type: SiteQuality
SIO_000300: 1.600325e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeDepth
all individuals: 344
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 671
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 576
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
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variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6463
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14996
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.149689583812371e-4
allele num: 8698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.585216e6

QD
type: SiteQuality
SIO_000300: 3.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.848e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeDepth
all individuals: 460
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8968
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
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variant carriers: 0

GenotypeQuality
all individuals: 661
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variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 827
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6463
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2370
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61350
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.363e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 5.871e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.563551e6

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

GenotypeDepth
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1675
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 460
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variant carriers: 0

GenotypeDepth
all individuals: 207
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variant carriers: 0

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.27815112276676e-5
allele num: 61010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14910
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

FS
type: SiteQuality
SIO_000300: 1.456e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.24750499001996e-4
allele num: 8016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.592e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.587e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

QD
type: SiteQuality
SIO_000300: 2.052e1

DP
type: SiteQuality
SIO_000300: 1.519171e6

GenotypeDepth
all individuals: 1021
bin: 3.75e1
variant carriers: 20

GenotypeDepth
all individuals: 17003
bin: 1.25e1
variant carriers: 78

GenotypeQuality
all individuals: 490
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5685
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 249
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1735
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 808
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6990
bin: 9.75e1
variant carriers: 583

GenotypeQuality
all individuals: 4371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14516
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 505
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3094
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18467
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 450
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 641
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 36
allele frequency: 3.657793131477342e-3
allele num: 9842
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 2.355712603062426e-3
allele num: 8490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.792555359326179e-4
allele num: 14722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 4.535938590369853e-3
allele num: 5732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 507
allele frequency: 8.455637091394262e-3
allele num: 59960
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 5.037783375314861e-3
allele num: 794
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

FS
type: SiteQuality
SIO_000300: 1.271e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.417998e6

QD
type: SiteQuality
SIO_000300: 1.389e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 461
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4577
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6446
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.767408978437611e-4
allele num: 5658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.074e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 1.063e0

DP
type: SiteQuality
SIO_000300: 1.362083e6

GenotypeDepth
all individuals: 461
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5560
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6450
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 580
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8227
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.047559187094071e-4
allele num: 9546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.815935657567393e-5
allele num: 58686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.336096e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 3.193e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeDepth
all individuals: 991
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14775
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1094
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.713972302207596e-5
allele num: 58344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

FS
type: SiteQuality
SIO_000300: 6.422e0

DP
type: SiteQuality
SIO_000300: 1.318942e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.976e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeDepth
all individuals: 14832
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8710
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.25e1
variant carriers: 0